Wall clock time and date at job start Tue Mar 31 2020 14:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47226 * 2 1 4 4 C 1.50702 * 109.47275 * 180.02562 * 3 2 1 5 5 O 1.20781 * 119.99967 * 0.02562 * 4 3 2 6 6 C 1.49087 * 120.00251 * 179.97438 * 4 3 2 7 7 O 1.21371 * 119.99827 * 5.99486 * 6 4 3 8 8 N 1.34775 * 120.00349 * 185.99573 * 6 4 3 9 9 C 1.46506 * 119.99646 * 5.35468 * 8 6 4 10 10 C 1.50701 * 109.47019 * 275.57948 * 9 8 6 11 11 H 1.07996 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99736 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47148 * 89.99836 * 14 12 10 16 16 H 1.48499 * 109.47220 * 209.99735 * 14 12 10 17 17 H 1.48500 * 109.47135 * 329.99630 * 14 12 10 18 18 C 1.46500 * 120.00115 * 185.08239 * 8 6 4 19 19 C 1.50696 * 109.46882 * 270.27323 * 18 8 6 20 20 C 1.38243 * 119.98788 * 269.72342 * 19 18 8 21 21 C 1.38220 * 120.01387 * 179.72678 * 20 19 18 22 22 C 1.38346 * 119.98514 * 0.55240 * 21 20 19 23 23 Cl 1.73599 * 120.01393 * 179.70495 * 22 21 20 24 24 C 1.38356 * 119.97442 * 359.72452 * 22 21 20 25 25 C 1.38218 * 119.98793 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46490 * 299.99666 * 1 2 3 28 28 H 1.08996 * 109.46912 * 59.99554 * 1 2 3 29 29 H 1.09006 * 109.46630 * 240.00363 * 2 1 3 30 30 H 1.09002 * 109.47575 * 120.00508 * 2 1 3 31 31 H 1.08998 * 109.47283 * 60.00339 * 3 2 1 32 32 H 1.08996 * 109.47540 * 300.00061 * 3 2 1 33 33 H 1.08994 * 109.46847 * 35.58459 * 9 8 6 34 34 H 1.08998 * 109.46570 * 155.58221 * 9 8 6 35 35 H 0.97001 * 119.99540 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46898 * 30.27631 * 18 8 6 37 37 H 1.09001 * 109.46990 * 150.27238 * 18 8 6 38 38 H 1.07998 * 119.99142 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.00533 * 180.27415 * 21 20 19 40 40 H 1.08002 * 120.01120 * 179.97438 * 24 22 21 41 41 H 1.07995 * 119.99687 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1510 0.3965 -0.0015 6 6 4.2925 2.7335 -0.0013 7 8 3.6907 3.7818 0.1084 8 7 5.6347 2.7367 -0.1238 9 6 6.3504 1.4830 -0.3737 10 6 6.6035 0.7797 0.9348 11 1 6.2648 1.2220 1.8600 12 6 7.2675 -0.4285 0.9508 13 7 7.6795 -0.9674 -0.1760 14 14 7.5807 -1.3008 2.5727 15 1 6.4423 -2.2048 2.8764 16 1 8.8312 -2.0956 2.4739 17 1 7.7175 -0.2955 3.6570 18 6 6.3774 3.9947 -0.0130 19 6 6.4979 4.6284 -1.3749 20 6 7.5820 4.3339 -2.1806 21 6 7.6902 4.9106 -3.4321 22 6 6.7191 5.7915 -3.8737 23 17 6.8582 6.5221 -5.4424 24 6 5.6373 6.0903 -3.0646 25 6 5.5276 5.5090 -1.8154 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 5.7485 0.8437 -1.0195 34 1 7.3016 1.6986 -0.8603 35 1 8.1464 -1.8176 -0.1647 36 1 5.8476 4.6715 0.6573 37 1 7.3726 3.7952 0.3843 38 1 8.3420 3.6494 -1.8340 39 1 8.5348 4.6770 -4.0631 40 1 4.8791 6.7782 -3.4087 41 1 4.6834 5.7425 -1.1836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144034786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:29 Heat of formation + Delta-G solvation = -53.570432 kcal Electronic energy + Delta-G solvation = -25024.687746 eV Core-core repulsion = 21316.720483 eV Total energy + Delta-G solvation = -3707.967263 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14083 -39.15743 -37.72877 -36.48543 -35.33715 -34.04843 -32.71696 -31.18132 -30.94507 -28.38103 -27.45113 -26.22475 -23.75143 -22.94916 -22.45671 -21.47745 -20.40173 -18.40011 -17.11191 -16.69761 -16.19877 -16.14818 -15.51379 -15.25583 -15.22192 -14.65604 -14.41426 -14.34005 -13.64548 -13.54199 -13.38210 -13.22656 -12.78632 -12.71943 -12.35421 -11.90692 -11.86697 -11.72209 -11.54551 -11.39894 -11.37676 -11.15759 -10.98819 -10.96466 -10.81013 -10.68769 -10.56859 -10.48861 -10.03136 -9.76784 -8.91721 -8.72624 -8.52630 -8.22844 -7.93069 -6.10278 -4.13006 1.19406 1.42208 1.83322 2.14967 3.27166 3.33512 3.33873 3.40332 3.70196 3.88153 4.37654 4.75643 4.88571 4.98002 5.06190 5.08583 5.18591 5.26409 5.30081 5.40037 5.50454 5.67101 5.68392 5.74209 5.79224 5.87448 5.93756 6.07368 6.10460 6.15445 6.31528 6.31949 6.34238 6.46915 6.57556 6.73356 6.92453 7.19920 7.32809 7.79157 7.85963 8.11012 8.12415 8.64735 8.88201 9.50402 10.98302 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.004205 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.335025 B = 6657.381394 C = 8566.831272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.146 4.146 4 C 0.316 3.684 5 O -0.354 6.354 6 C 0.476 3.524 7 O -0.554 6.554 8 N -0.563 5.563 9 C 0.236 3.764 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.151 3.849 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.036 4.036 23 Cl -0.083 7.083 24 C -0.118 4.118 25 C -0.085 4.085 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 9.908 -4.596 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.184 4.184 4 C 0.182 3.818 5 O -0.220 6.220 6 C 0.262 3.738 7 O -0.435 6.435 8 N -0.294 5.294 9 C 0.117 3.883 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.133 4.133 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.028 3.972 19 C -0.093 4.093 20 C -0.106 4.106 21 C -0.134 4.134 22 C -0.063 4.063 23 Cl -0.055 7.055 24 C -0.137 4.137 25 C -0.103 4.103 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.683 9.716 -4.743 12.215 hybrid contribution 0.313 -0.499 0.644 0.873 sum -5.369 9.217 -4.099 11.428 Atomic orbital electron populations 1.21760 0.95723 1.01543 1.01649 1.21386 0.95293 0.95444 1.03520 1.21832 0.92891 0.98952 1.04727 1.24516 0.91937 0.89190 0.76161 1.90675 1.70111 1.33735 1.27449 1.21026 0.83347 0.90993 0.78423 1.90601 1.68413 1.33193 1.51254 1.48478 1.05590 1.09714 1.65605 1.19808 0.92320 0.78374 0.97831 1.21210 1.36610 1.05276 0.92330 0.92663 1.24811 0.95404 0.96739 0.96330 1.69913 1.38777 1.18546 1.25643 0.86579 0.77673 0.79792 0.83859 1.20570 1.21183 1.19980 1.20376 0.98357 0.86107 0.92383 1.20487 0.94484 0.96490 0.97810 1.21184 0.98161 0.98317 0.92973 1.21016 0.98697 0.96936 0.96761 1.20925 0.98133 0.99641 0.87556 1.98347 1.97929 1.82254 1.26928 1.21019 0.97154 1.01288 0.94243 1.21222 0.98542 0.95416 0.95152 0.92705 0.92773 0.92809 0.91328 0.91211 0.88514 0.88719 0.92807 0.94920 0.92747 0.89607 0.88830 0.84599 0.85118 0.85302 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.62 5.22 -26.73 -0.14 -1.76 16 3 C -0.15 -2.11 5.29 -27.89 -0.15 -2.26 16 4 C 0.32 5.99 7.01 -29.80 -0.21 5.78 16 5 O -0.35 -7.93 11.75 5.98 0.07 -7.86 16 6 C 0.48 9.43 7.65 -11.76 -0.09 9.34 16 7 O -0.55 -10.85 15.47 5.48 0.08 -10.77 16 8 N -0.56 -11.35 2.45 -177.09 -0.43 -11.79 16 9 C 0.24 5.56 4.76 -5.19 -0.02 5.54 16 10 C -0.52 -13.42 7.67 -34.44 -0.26 -13.68 16 11 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 12 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 13 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 14 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.15 2.55 5.46 -5.20 -0.03 2.52 16 19 C -0.09 -1.41 5.46 -104.62 -0.57 -1.99 16 20 C -0.09 -1.28 9.70 -39.59 -0.38 -1.67 16 21 C -0.12 -1.56 9.83 -39.55 -0.39 -1.95 16 22 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 23 Cl -0.08 -1.00 28.96 -51.86 -1.50 -2.50 16 24 C -0.12 -1.57 9.83 -39.55 -0.39 -1.96 16 25 C -0.08 -1.23 9.54 -39.59 -0.38 -1.61 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.40 5.98 -51.93 -0.31 1.09 16 34 H 0.03 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.09 1.39 7.45 -51.93 -0.39 1.00 16 37 H 0.09 1.53 8.01 -51.93 -0.42 1.11 16 38 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.14 2.02 7.36 -52.49 -0.39 1.63 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -28.86 365.93 -9.23 -38.09 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.69 Total: 1.40 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -2.99 Total: -3.86 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.30 Total: -35.99 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.16 Total: -18.63 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.86 -9.23 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144034786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.477 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds