Wall clock time and date at job start Tue Mar 31 2020 14:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47226 * 2 1 4 4 C 1.50702 * 109.47275 * 180.02562 * 3 2 1 5 5 O 1.20781 * 119.99967 * 0.02562 * 4 3 2 6 6 C 1.49087 * 120.00251 * 179.97438 * 4 3 2 7 7 O 1.21371 * 119.99827 * 5.99486 * 6 4 3 8 8 N 1.34775 * 120.00349 * 185.99573 * 6 4 3 9 9 C 1.46506 * 119.99646 * 5.35468 * 8 6 4 10 10 C 1.50701 * 109.47019 * 275.57948 * 9 8 6 11 11 H 1.07996 * 119.99959 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99736 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47148 * 89.99836 * 14 12 10 16 16 H 1.48499 * 109.47220 * 209.99735 * 14 12 10 17 17 H 1.48500 * 109.47135 * 329.99630 * 14 12 10 18 18 C 1.46500 * 120.00115 * 185.08239 * 8 6 4 19 19 C 1.50696 * 109.46882 * 270.27323 * 18 8 6 20 20 C 1.38243 * 119.98788 * 269.72342 * 19 18 8 21 21 C 1.38220 * 120.01387 * 179.72678 * 20 19 18 22 22 C 1.38346 * 119.98514 * 0.55240 * 21 20 19 23 23 Cl 1.73599 * 120.01393 * 179.70495 * 22 21 20 24 24 C 1.38356 * 119.97442 * 359.72452 * 22 21 20 25 25 C 1.38218 * 119.98793 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46490 * 299.99666 * 1 2 3 28 28 H 1.08996 * 109.46912 * 59.99554 * 1 2 3 29 29 H 1.09006 * 109.46630 * 240.00363 * 2 1 3 30 30 H 1.09002 * 109.47575 * 120.00508 * 2 1 3 31 31 H 1.08998 * 109.47283 * 60.00339 * 3 2 1 32 32 H 1.08996 * 109.47540 * 300.00061 * 3 2 1 33 33 H 1.08994 * 109.46847 * 35.58459 * 9 8 6 34 34 H 1.08998 * 109.46570 * 155.58221 * 9 8 6 35 35 H 0.97001 * 119.99540 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.46898 * 30.27631 * 18 8 6 37 37 H 1.09001 * 109.46990 * 150.27238 * 18 8 6 38 38 H 1.07998 * 119.99142 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.00533 * 180.27415 * 21 20 19 40 40 H 1.08002 * 120.01120 * 179.97438 * 24 22 21 41 41 H 1.07995 * 119.99687 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1510 0.3965 -0.0015 6 6 4.2925 2.7335 -0.0013 7 8 3.6907 3.7818 0.1084 8 7 5.6347 2.7367 -0.1238 9 6 6.3504 1.4830 -0.3737 10 6 6.6035 0.7797 0.9348 11 1 6.2648 1.2220 1.8600 12 6 7.2675 -0.4285 0.9508 13 7 7.6795 -0.9674 -0.1760 14 14 7.5807 -1.3008 2.5727 15 1 6.4423 -2.2048 2.8764 16 1 8.8312 -2.0956 2.4739 17 1 7.7175 -0.2955 3.6570 18 6 6.3774 3.9947 -0.0130 19 6 6.4979 4.6284 -1.3749 20 6 7.5820 4.3339 -2.1806 21 6 7.6902 4.9106 -3.4321 22 6 6.7191 5.7915 -3.8737 23 17 6.8582 6.5221 -5.4424 24 6 5.6373 6.0903 -3.0646 25 6 5.5276 5.5090 -1.8154 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 5.7485 0.8437 -1.0195 34 1 7.3016 1.6986 -0.8603 35 1 8.1464 -1.8176 -0.1647 36 1 5.8476 4.6715 0.6573 37 1 7.3726 3.7952 0.3843 38 1 8.3420 3.6494 -1.8340 39 1 8.5348 4.6770 -4.0631 40 1 4.8791 6.7782 -3.4087 41 1 4.6834 5.7425 -1.1836 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144034786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:29 Heat of formation + Delta-G solvation = -66.729528 kcal Electronic energy + Delta-G solvation = -25025.258367 eV Core-core repulsion = 21316.720483 eV Total energy + Delta-G solvation = -3708.537884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66299 -40.36971 -39.23774 -37.56886 -36.87048 -35.21722 -34.62579 -32.54242 -32.04538 -29.61473 -29.24964 -27.59335 -25.36960 -24.39291 -23.71732 -22.61991 -21.63565 -19.93873 -18.73931 -18.19133 -17.79544 -17.62829 -16.95661 -16.46542 -16.41625 -16.35252 -15.95609 -15.64282 -15.10595 -14.77483 -14.47470 -14.35344 -14.29360 -14.04884 -13.89538 -13.58704 -13.19851 -12.93806 -12.87073 -12.79253 -12.66938 -12.53245 -12.43477 -12.30101 -12.24239 -11.99843 -11.81894 -11.77444 -11.69548 -11.61197 -10.58573 -10.07253 -10.01162 -9.66269 -9.52533 -8.14991 -6.23593 0.05482 0.28880 0.32001 1.10768 1.39489 1.41533 1.49533 1.96163 2.15702 2.43281 2.68764 3.18943 3.22531 3.76994 3.82194 3.89756 3.94591 4.11446 4.12718 4.18724 4.36500 4.55793 4.61498 4.65270 4.71870 4.75972 4.79134 4.84111 4.94181 5.00032 5.19017 5.22145 5.22984 5.27974 5.29077 5.45621 5.50462 5.60738 5.76998 5.80264 6.09389 6.25512 6.47149 6.81028 7.09618 7.43330 8.92875 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.004205 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.335025 B = 6657.381394 C = 8566.831272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.137 4.137 4 C 0.316 3.684 5 O -0.397 6.397 6 C 0.469 3.531 7 O -0.549 6.549 8 N -0.569 5.569 9 C 0.256 3.744 10 C -0.517 4.517 11 H 0.047 0.953 12 C 0.024 3.976 13 N -0.921 5.921 14 Si 0.949 3.051 15 H -0.282 1.282 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.150 3.850 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.039 4.039 23 Cl -0.067 7.067 24 C -0.115 4.115 25 C -0.089 4.089 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.030 0.970 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 11.047 -4.723 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.175 4.175 4 C 0.185 3.815 5 O -0.265 6.265 6 C 0.255 3.745 7 O -0.430 6.430 8 N -0.299 5.299 9 C 0.136 3.864 10 C -0.555 4.555 11 H 0.065 0.935 12 C -0.176 4.176 13 N -0.562 5.562 14 Si 0.775 3.225 15 H -0.208 1.208 16 H -0.205 1.205 17 H -0.192 1.192 18 C 0.028 3.972 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.066 4.066 23 Cl -0.039 7.039 24 C -0.133 4.133 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.851 10.896 -4.864 13.759 hybrid contribution 0.645 -0.745 0.613 1.161 sum -6.206 10.151 -4.251 12.634 Atomic orbital electron populations 1.21718 0.92948 1.02505 1.02836 1.21370 0.97595 0.94456 1.02058 1.21900 0.89184 1.00028 1.06373 1.25193 0.93979 0.88142 0.74158 1.90670 1.71327 1.34769 1.29727 1.21343 0.83293 0.91599 0.78315 1.90589 1.68194 1.33142 1.51110 1.48432 1.05967 1.09695 1.65823 1.19299 0.91483 0.79333 0.96313 1.21380 1.35932 1.05408 0.92805 0.93513 1.25502 0.95467 0.97516 0.99101 1.70011 1.39812 1.18964 1.27365 0.85702 0.77460 0.78780 0.80582 1.20834 1.20543 1.19201 1.20479 0.98046 0.84921 0.93760 1.20374 0.95480 0.97437 0.97280 1.21217 0.98081 0.98683 0.93621 1.21202 0.99306 0.96544 0.96374 1.21048 0.97928 0.99342 0.88238 1.98355 1.97875 1.81897 1.25734 1.21234 0.97505 1.01039 0.93539 1.21227 0.98236 0.95491 0.95798 0.91946 0.91635 0.91531 0.92734 0.92907 0.86737 0.86642 0.95244 0.95963 0.92765 0.88953 0.88878 0.84963 0.83452 0.83122 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.91 71.98 0.71 -1.98 16 2 C -0.12 -3.09 5.22 30.59 0.16 -2.93 16 3 C -0.14 -3.78 5.29 29.85 0.16 -3.62 16 4 C 0.32 12.05 7.01 28.60 0.20 12.25 16 5 O -0.40 -18.30 11.75 -1.51 -0.02 -18.32 16 6 C 0.47 18.51 7.65 87.16 0.67 19.17 16 7 O -0.55 -20.94 15.47 -3.31 -0.05 -20.99 16 8 N -0.57 -23.26 2.45 -832.54 -2.04 -25.30 16 9 C 0.26 12.47 4.76 85.63 0.41 12.88 16 10 C -0.52 -27.43 7.67 25.60 0.20 -27.24 16 11 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 12 C 0.02 1.29 5.46 84.65 0.46 1.75 16 13 N -0.92 -52.70 13.29 21.45 0.28 -52.42 16 14 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C 0.15 5.10 5.46 85.63 0.47 5.57 16 19 C -0.10 -3.21 5.46 -19.86 -0.11 -3.32 16 20 C -0.10 -2.84 9.70 22.27 0.22 -2.63 16 21 C -0.12 -2.99 9.83 22.29 0.22 -2.77 16 22 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16 23 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 24 C -0.11 -2.83 9.83 22.29 0.22 -2.61 16 25 C -0.09 -2.49 9.54 22.27 0.21 -2.28 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.57 8.10 -2.38 -0.02 1.55 16 30 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.03 1.60 5.98 -2.39 -0.01 1.59 16 34 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.09 2.98 7.45 -2.39 -0.02 2.96 16 37 H 0.09 3.11 8.01 -2.39 -0.02 3.09 16 38 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.14 3.84 7.36 -2.91 -0.02 3.82 16 Total: -1.00 -61.75 365.93 5.48 -56.27 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.03 Total: 15.47 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 4.33 Total: 1.43 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.76 Total: -77.72 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.07 Total: -39.31 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -61.75 5.48 -56.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144034786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.457 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds