Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.53008 * 109.46874 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46788 * 180.02562 * 4 3 2 6 6 C 1.36952 * 120.00309 * 95.87122 * 5 4 3 7 7 H 1.07999 * 119.99955 * 220.98618 * 6 5 4 8 8 C 1.38972 * 119.99951 * 40.70624 * 6 5 4 9 9 N 1.31417 * 119.99950 * 8.38608 * 8 6 5 10 10 Si 1.86803 * 120.00203 * 188.38254 * 8 6 5 11 11 H 1.48499 * 109.47019 * 90.00145 * 10 8 6 12 12 H 1.48491 * 109.47259 * 210.00460 * 10 8 6 13 13 H 1.48501 * 109.46624 * 330.00183 * 10 8 6 14 14 C 1.34777 * 119.99665 * 275.86370 * 5 4 3 15 15 O 1.21719 * 120.00295 * 355.78045 * 14 5 4 16 16 C 1.46700 * 119.99704 * 175.77768 * 14 5 4 17 17 C 1.39660 * 120.80637 * 80.56721 * 16 14 5 18 18 N 1.31911 * 118.93233 * 179.97438 * 17 16 14 19 19 C 1.33145 * 122.59901 * 359.97438 * 18 17 16 20 20 N 1.35361 * 122.01846 * 0.02562 * 19 18 17 21 21 C 1.36972 * 118.24277 * 359.74318 * 20 19 18 22 22 O 1.21826 * 120.09191 * 180.26955 * 21 20 19 23 23 C 1.46119 * 116.94228 * 179.97438 * 20 19 18 24 24 C 1.52666 * 112.74110 * 0.02562 * 23 20 19 25 25 S 1.77195 * 128.07981 * 180.02562 * 19 18 17 26 26 H 1.09003 * 109.47561 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47690 * 300.00107 * 1 2 3 28 28 H 1.09004 * 109.47025 * 60.00195 * 1 2 3 29 29 H 1.08996 * 109.47084 * 239.99565 * 2 1 3 30 30 H 1.09004 * 109.47025 * 119.99805 * 2 1 3 31 31 H 1.08998 * 109.47064 * 59.99983 * 3 2 1 32 32 H 1.08998 * 109.47193 * 299.99336 * 3 2 1 33 33 H 1.08996 * 109.47096 * 59.99630 * 4 3 2 34 34 H 1.08998 * 109.46716 * 299.99686 * 4 3 2 35 35 H 0.97002 * 120.00349 * 180.02562 * 9 8 6 36 36 H 1.07996 * 120.53373 * 359.97438 * 17 16 14 37 37 H 1.08995 * 108.83586 * 239.14117 * 23 20 19 38 38 H 1.08998 * 108.83321 * 120.86396 * 23 20 19 39 39 H 1.09003 * 110.48841 * 241.32372 * 24 23 20 40 40 H 1.08998 * 110.60364 * 118.72590 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.4004 3.4286 1.1814 7 1 4.1299 4.4590 1.3583 8 6 5.0907 2.7146 2.1536 9 7 5.5592 1.5174 1.8810 10 14 5.3527 3.4567 3.8477 11 1 4.2196 3.0837 4.7321 12 1 6.6206 2.9409 4.4234 13 1 5.4261 4.9356 3.7343 14 6 4.1710 3.4991 -1.1596 15 8 3.9407 2.9380 -2.2150 16 6 4.5710 4.9104 -1.1512 17 6 5.9142 5.2724 -1.0278 18 7 6.2325 6.5525 -1.0250 19 6 5.3226 7.5182 -1.1360 20 7 4.0018 7.2490 -1.2593 21 6 3.6062 5.9377 -1.2739 22 8 2.4262 5.6569 -1.3883 23 6 3.1006 8.3935 -1.3729 24 6 3.8364 9.7305 -1.3311 25 16 5.5848 9.2706 -1.1499 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9288 0.8909 35 1 6.0407 1.0189 2.5597 36 1 6.6800 4.5164 -0.9361 37 1 2.3840 8.3600 -0.5523 38 1 2.5564 8.3208 -2.3145 39 1 3.5067 10.3209 -0.4762 40 1 3.6812 10.2829 -2.2578 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152497717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = -20.902380 kcal Electronic energy + Delta-G solvation = -25686.191913 eV Core-core repulsion = 22013.977700 eV Total energy + Delta-G solvation = -3672.214212 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41251 -38.53441 -37.23154 -36.20230 -35.16469 -33.89815 -31.53460 -31.31464 -30.60241 -28.26388 -26.09496 -24.93068 -24.25491 -23.25999 -22.42362 -20.41369 -19.42110 -18.43591 -18.15185 -17.83952 -16.92579 -16.22820 -15.82873 -15.31349 -14.78210 -14.68142 -14.43912 -14.33164 -14.02456 -13.66648 -13.56500 -13.23445 -12.96678 -12.79864 -12.62446 -12.52751 -12.13059 -11.95153 -11.39398 -11.29361 -11.19135 -11.04119 -10.55680 -10.50091 -10.40247 -10.28910 -10.20047 -10.10472 -9.77528 -9.67279 -9.08427 -8.85684 -8.57569 -7.64503 -7.47102 -6.35341 -4.16629 0.54319 0.58254 1.40566 2.08983 2.26470 3.09267 3.18078 3.19964 3.68296 3.69218 3.87137 4.06964 4.22337 4.43233 4.66355 4.83798 4.95342 4.98852 5.04427 5.16419 5.57025 5.57872 5.70561 5.74356 5.94435 6.00679 6.18394 6.31832 6.43898 6.49598 6.52536 6.59534 6.71628 6.82089 6.95858 7.21148 7.34023 7.58826 7.80627 7.95518 8.04024 8.37767 9.02690 9.46105 9.90253 10.62952 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.004790 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.465291 B = 5844.162750 C = 7039.173764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.113 3.887 5 N -0.424 5.424 6 C -0.329 4.329 7 H 0.079 0.921 8 C 0.046 3.954 9 N -0.864 5.864 10 Si 0.917 3.083 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.539 3.461 15 O -0.590 6.590 16 C -0.231 4.231 17 C 0.201 3.799 18 N -0.508 5.508 19 C 0.354 3.646 20 N -0.531 5.531 21 C 0.543 3.457 22 O -0.519 6.519 23 C 0.082 3.918 24 C -0.123 4.123 25 S 0.005 5.995 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.271 0.729 36 H 0.182 0.818 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 13.549 -2.080 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.010 4.010 5 N -0.141 5.141 6 C -0.457 4.457 7 H 0.097 0.903 8 C -0.160 4.160 9 N -0.501 5.501 10 Si 0.743 3.257 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.325 3.675 15 O -0.475 6.475 16 C -0.243 4.243 17 C 0.056 3.944 18 N -0.232 5.232 19 C -0.016 4.016 20 N -0.255 5.255 21 C 0.342 3.658 22 O -0.395 6.395 23 C -0.041 4.041 24 C -0.272 4.272 25 S 0.238 5.762 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.199 0.801 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.092 13.695 -2.386 13.944 hybrid contribution -1.684 -0.571 0.905 1.995 sum -2.775 13.124 -1.482 13.496 Atomic orbital electron populations 1.21758 0.96736 1.00561 1.01491 1.21412 0.94897 0.97694 1.01564 1.21920 0.98003 0.95448 1.01411 1.21587 0.90917 0.84353 1.04122 1.43330 1.54267 1.12040 1.04415 1.19298 1.35195 0.97992 0.93241 0.90324 1.25414 0.94566 0.95941 1.00056 1.69757 1.34153 1.11656 1.34542 0.86084 0.78035 0.79458 0.82123 1.20167 1.20527 1.19464 1.17301 0.81201 0.84555 0.84470 1.90665 1.55797 1.69602 1.31424 1.21652 0.93774 0.96027 1.12878 1.22976 0.94906 0.90263 0.86223 1.67860 1.31224 1.00476 1.23670 1.25758 0.81802 1.00492 0.93510 1.48125 1.07044 1.09606 1.60764 1.17387 0.90022 0.79453 0.78935 1.90884 1.17659 1.80289 1.50653 1.21701 0.93078 0.82398 1.06926 1.24398 0.94203 0.99287 1.09333 1.86522 1.08501 0.91023 1.90168 0.93455 0.93108 0.93090 0.92402 0.92225 0.92520 0.92874 0.92954 0.86578 0.91848 0.80084 0.87529 0.87594 0.85476 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.92 16 2 C -0.12 -2.12 5.93 -26.73 -0.16 -2.28 16 3 C -0.13 -2.86 5.50 -26.73 -0.15 -3.01 16 4 C 0.11 2.82 4.88 -4.04 -0.02 2.80 16 5 N -0.42 -11.20 2.53 -116.28 -0.29 -11.50 16 6 C -0.33 -8.57 8.50 -14.99 -0.13 -8.70 16 7 H 0.08 2.07 7.37 -52.49 -0.39 1.69 16 8 C 0.05 1.15 5.19 -17.46 -0.09 1.06 16 9 N -0.86 -22.41 11.00 55.50 0.61 -21.80 16 10 Si 0.92 19.71 29.56 -169.99 -5.03 14.68 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 C 0.54 14.32 6.59 -12.84 -0.08 14.23 16 15 O -0.59 -17.07 16.76 5.17 0.09 -16.99 16 16 C -0.23 -5.33 4.19 -104.72 -0.44 -5.77 16 17 C 0.20 4.04 10.91 -16.99 -0.19 3.86 16 18 N -0.51 -9.09 10.36 -12.23 -0.13 -9.22 16 19 C 0.35 5.51 8.32 -87.83 -0.73 4.78 16 20 N -0.53 -8.60 3.05 -118.75 -0.36 -8.96 16 21 C 0.54 11.72 7.56 -14.03 -0.11 11.61 16 22 O -0.52 -12.63 16.90 5.08 0.09 -12.55 16 23 C 0.08 0.85 6.58 -4.42 -0.03 0.83 16 24 C -0.12 -0.76 7.36 36.99 0.27 -0.48 16 25 S 0.01 0.05 23.24 -107.50 -2.50 -2.44 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.35 7.55 -51.93 -0.39 0.95 16 34 H 0.12 2.99 5.34 -51.93 -0.28 2.72 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.18 3.45 8.06 -52.49 -0.42 3.03 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -34.14 352.31 -8.96 -43.09 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.26 Total: 3.35 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -1.48 Total: 17.01 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.17 Total: -51.47 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: 0.17 Total: -29.53 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.50 Total: -2.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.14 -8.96 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152497717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.192 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds