Wall clock time and date at job start Tue Mar 31 2020 13:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47522 * 2 1 4 4 C 1.53001 * 109.47508 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99928 * 265.55864 * 5 4 3 7 7 H 1.08007 * 119.99758 * 145.67486 * 6 5 4 8 8 C 1.38943 * 120.00084 * 325.67089 * 6 5 4 9 9 N 1.31410 * 120.00007 * 338.40985 * 8 6 5 10 10 Si 1.86799 * 119.99870 * 158.41321 * 8 6 5 11 11 H 1.48499 * 109.47396 * 90.00252 * 10 8 6 12 12 H 1.48506 * 109.47100 * 209.99915 * 10 8 6 13 13 H 1.48500 * 109.47407 * 329.99803 * 10 8 6 14 14 C 1.34779 * 119.99856 * 85.56154 * 5 4 3 15 15 O 1.21292 * 120.00337 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99713 * 179.97438 * 14 5 4 17 17 C 1.50706 * 109.46759 * 179.97438 * 16 14 5 18 18 O 1.21259 * 120.00088 * 359.97438 * 17 16 14 19 19 C 1.47077 * 119.99881 * 179.97438 * 17 16 14 20 20 C 1.39910 * 120.18149 * 0.02562 * 19 17 16 21 21 C 1.37817 * 119.83583 * 179.97438 * 20 19 17 22 22 C 1.38472 * 120.21277 * 359.97438 * 21 20 19 23 23 C 1.38310 * 120.37731 * 359.97438 * 22 21 20 24 24 C 1.38094 * 120.15074 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.10336 * 180.02562 * 24 23 22 26 26 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46625 * 299.99963 * 1 2 3 28 28 H 1.08993 * 109.47383 * 59.99546 * 1 2 3 29 29 H 1.09001 * 109.46625 * 240.00037 * 2 1 3 30 30 H 1.08997 * 109.47111 * 120.00867 * 2 1 3 31 31 H 1.09001 * 109.47140 * 60.00353 * 3 2 1 32 32 H 1.09005 * 109.47410 * 300.00387 * 3 2 1 33 33 H 1.09001 * 109.46945 * 59.99850 * 4 3 2 34 34 H 1.09001 * 109.47060 * 299.99971 * 4 3 2 35 35 H 0.97008 * 119.99924 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47201 * 59.99965 * 16 14 5 37 37 H 1.08992 * 109.47251 * 299.99601 * 16 14 5 38 38 H 1.08000 * 120.08358 * 0.24367 * 20 19 17 39 39 H 1.08003 * 119.89423 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.81545 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.92166 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 4.3732 3.4388 -1.1853 7 1 4.1963 4.4973 -1.3076 8 6 4.9197 2.7008 -2.2280 9 7 5.5227 1.5598 -1.9799 10 14 4.7974 3.3304 -3.9824 11 1 5.9804 4.1739 -4.2892 12 1 4.7538 2.1793 -4.9196 13 1 3.5607 4.1386 -4.1332 14 6 4.1984 3.4893 1.1622 15 8 3.9196 2.9452 2.2097 16 6 4.7014 4.9099 1.1616 17 6 4.7650 5.4208 2.5780 18 8 4.4342 4.7024 3.4971 19 6 5.2285 6.7908 2.8454 20 6 5.6106 7.6232 1.7877 21 6 6.0432 8.9058 2.0465 22 6 6.1002 9.3726 3.3489 23 6 5.7235 8.5577 4.4010 24 6 5.2876 7.2699 4.1593 25 17 4.8145 6.2483 5.4808 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.6769 1.9562 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9286 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 5.9039 1.0444 -2.7079 36 1 4.0236 5.5351 0.5803 37 1 5.6964 4.9429 0.7181 38 1 5.5625 7.2629 0.7707 39 1 6.3389 9.5490 1.2307 40 1 6.4406 10.3788 3.5443 41 1 5.7704 8.9295 5.4139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185436823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:13 Heat of formation + Delta-G solvation = -50.894108 kcal Electronic energy + Delta-G solvation = -24785.887676 eV Core-core repulsion = 21078.036467 eV Total energy + Delta-G solvation = -3707.851209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.95829 -38.66085 -37.47415 -36.29206 -35.12337 -33.89852 -31.97848 -31.44444 -30.76250 -29.78102 -27.90601 -24.88863 -24.10038 -22.91565 -22.33086 -20.50148 -19.84357 -18.90617 -17.38373 -16.75199 -16.13462 -15.55385 -15.43334 -15.05776 -14.66302 -14.60233 -14.28193 -14.08397 -13.80532 -13.77569 -13.30827 -13.24132 -12.57645 -12.38715 -12.17641 -11.95828 -11.91869 -11.50419 -11.47098 -11.39116 -11.28554 -11.18174 -10.94759 -10.82466 -10.55946 -10.45156 -10.31463 -10.18277 -9.67782 -9.17551 -9.13463 -8.91968 -8.81056 -8.11285 -7.48406 -6.38192 -4.05981 0.64849 1.08045 2.20980 2.73311 3.07150 3.18716 3.21582 3.67524 3.93955 4.05405 4.18033 4.62334 4.75763 4.87288 4.98139 5.05513 5.18270 5.38946 5.52061 5.53493 5.57136 5.71001 5.76215 5.98538 6.03024 6.05702 6.13537 6.16265 6.19839 6.28873 6.37001 6.44955 6.51983 6.59104 6.67573 6.79432 6.90431 7.18492 7.34878 7.52571 7.94011 8.10774 8.37793 9.08098 9.56010 10.00917 10.62222 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003921 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.607404 B = 7139.470835 C = 8894.142744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.442 5.442 6 C -0.341 4.341 7 H 0.088 0.912 8 C 0.044 3.956 9 N -0.856 5.856 10 Si 0.910 3.090 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.468 3.532 15 O -0.570 6.570 16 C -0.164 4.164 17 C 0.374 3.626 18 O -0.379 6.379 19 C -0.147 4.147 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.089 4.089 23 C -0.128 4.128 24 C 0.006 3.994 25 Cl -0.037 7.037 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 12.302 4.079 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.007 4.007 5 N -0.162 5.162 6 C -0.469 4.469 7 H 0.106 0.894 8 C -0.162 4.162 9 N -0.493 5.493 10 Si 0.736 3.264 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.255 3.745 15 O -0.453 6.453 16 C -0.204 4.204 17 C 0.246 3.754 18 O -0.248 6.248 19 C -0.149 4.149 20 C -0.083 4.083 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.022 4.022 25 Cl -0.008 7.008 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.399 11.342 5.122 12.451 hybrid contribution 0.087 0.411 -1.127 1.203 sum -0.311 11.753 3.994 12.417 Atomic orbital electron populations 1.21756 0.96710 1.00621 1.01446 1.21425 0.94914 0.97844 1.01554 1.21904 0.98094 0.95404 1.01241 1.21406 0.90958 0.84863 1.03516 1.43460 1.56029 1.12107 1.04558 1.19380 1.41908 0.95347 0.90236 0.89416 1.25304 0.94324 0.96352 1.00255 1.69936 1.31588 1.14902 1.32853 0.86222 0.78892 0.78647 0.82632 1.20284 1.20739 1.19368 1.19927 0.82340 0.87982 0.84257 1.90665 1.54211 1.69462 1.30992 1.21713 1.05134 0.98115 0.95463 1.22168 0.76306 0.85256 0.91715 1.90711 1.31898 1.56012 1.46175 1.20719 1.04126 0.97902 0.92186 1.21584 0.94553 0.93020 0.99099 1.21235 1.00489 0.96044 0.97083 1.21298 0.97491 0.99564 0.92342 1.21044 1.01039 0.92163 1.00437 1.21295 0.99143 0.92377 0.89344 1.98422 1.89647 1.67498 1.45226 0.93467 0.93092 0.93085 0.92313 0.92418 0.92895 0.92475 0.87550 0.93138 0.92037 0.87365 0.86492 0.83738 0.84908 0.85011 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -2.08 5.93 -26.73 -0.16 -2.24 16 3 C -0.13 -2.67 5.51 -26.74 -0.15 -2.82 16 4 C 0.12 2.80 4.92 -4.04 -0.02 2.78 16 5 N -0.44 -10.98 2.55 -114.81 -0.29 -11.27 16 6 C -0.34 -8.22 8.70 -14.94 -0.13 -8.35 16 7 H 0.09 1.95 6.98 -52.48 -0.37 1.58 16 8 C 0.04 1.06 4.94 -17.47 -0.09 0.97 16 9 N -0.86 -22.01 11.31 55.50 0.63 -21.38 16 10 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 14 C 0.47 11.45 7.60 -10.98 -0.08 11.37 16 15 O -0.57 -15.75 13.83 -18.97 -0.26 -16.01 16 16 C -0.16 -3.14 3.46 -29.03 -0.10 -3.24 16 17 C 0.37 7.09 7.10 -30.72 -0.22 6.87 16 18 O -0.38 -8.60 11.80 -18.94 -0.22 -8.82 16 19 C -0.15 -2.22 5.87 -105.04 -0.62 -2.84 16 20 C -0.06 -0.75 9.47 -39.11 -0.37 -1.12 16 21 C -0.13 -1.22 10.03 -39.65 -0.40 -1.62 16 22 C -0.09 -0.80 10.04 -39.47 -0.40 -1.19 16 23 C -0.13 -1.39 9.82 -39.61 -0.39 -1.78 16 24 C 0.01 0.08 6.36 -38.98 -0.25 -0.17 16 25 Cl -0.04 -0.60 26.03 -51.86 -1.35 -1.95 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 2.69 5.34 -51.93 -0.28 2.42 16 34 H 0.05 1.29 7.56 -51.93 -0.39 0.90 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.11 1.80 7.59 -51.93 -0.39 1.40 16 37 H 0.12 2.08 8.04 -51.93 -0.42 1.67 16 38 H 0.14 1.47 7.05 -52.49 -0.37 1.10 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -31.29 358.15 -9.71 -41.00 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.58 Total: 4.73 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.99 Total: -5.18 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.33 Total: -32.65 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.49 Total: -24.84 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.35 Total: -1.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.29 -9.71 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185436823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.891 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds