Wall clock time and date at job start Tue Mar 31 2020 13:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47522 * 2 1 4 4 C 1.53001 * 109.47508 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47264 * 179.97438 * 4 3 2 6 6 C 1.37097 * 119.99928 * 265.55864 * 5 4 3 7 7 H 1.08007 * 119.99758 * 145.67486 * 6 5 4 8 8 C 1.38943 * 120.00084 * 325.67089 * 6 5 4 9 9 N 1.31410 * 120.00007 * 338.40985 * 8 6 5 10 10 Si 1.86799 * 119.99870 * 158.41321 * 8 6 5 11 11 H 1.48499 * 109.47396 * 90.00252 * 10 8 6 12 12 H 1.48506 * 109.47100 * 209.99915 * 10 8 6 13 13 H 1.48500 * 109.47407 * 329.99803 * 10 8 6 14 14 C 1.34779 * 119.99856 * 85.56154 * 5 4 3 15 15 O 1.21292 * 120.00337 * 359.97438 * 14 5 4 16 16 C 1.50701 * 119.99713 * 179.97438 * 14 5 4 17 17 C 1.50706 * 109.46759 * 179.97438 * 16 14 5 18 18 O 1.21259 * 120.00088 * 359.97438 * 17 16 14 19 19 C 1.47077 * 119.99881 * 179.97438 * 17 16 14 20 20 C 1.39910 * 120.18149 * 0.02562 * 19 17 16 21 21 C 1.37817 * 119.83583 * 179.97438 * 20 19 17 22 22 C 1.38472 * 120.21277 * 359.97438 * 21 20 19 23 23 C 1.38310 * 120.37731 * 359.97438 * 22 21 20 24 24 C 1.38094 * 120.15074 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 120.10336 * 180.02562 * 24 23 22 26 26 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46625 * 299.99963 * 1 2 3 28 28 H 1.08993 * 109.47383 * 59.99546 * 1 2 3 29 29 H 1.09001 * 109.46625 * 240.00037 * 2 1 3 30 30 H 1.08997 * 109.47111 * 120.00867 * 2 1 3 31 31 H 1.09001 * 109.47140 * 60.00353 * 3 2 1 32 32 H 1.09005 * 109.47410 * 300.00387 * 3 2 1 33 33 H 1.09001 * 109.46945 * 59.99850 * 4 3 2 34 34 H 1.09001 * 109.47060 * 299.99971 * 4 3 2 35 35 H 0.97008 * 119.99924 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47201 * 59.99965 * 16 14 5 37 37 H 1.08992 * 109.47251 * 299.99601 * 16 14 5 38 38 H 1.08000 * 120.08358 * 0.24367 * 20 19 17 39 39 H 1.08003 * 119.89423 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.81545 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.92166 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 4.3732 3.4388 -1.1853 7 1 4.1963 4.4973 -1.3076 8 6 4.9197 2.7008 -2.2280 9 7 5.5227 1.5598 -1.9799 10 14 4.7974 3.3304 -3.9824 11 1 5.9804 4.1739 -4.2892 12 1 4.7538 2.1793 -4.9196 13 1 3.5607 4.1386 -4.1332 14 6 4.1984 3.4893 1.1622 15 8 3.9196 2.9452 2.2097 16 6 4.7014 4.9099 1.1616 17 6 4.7650 5.4208 2.5780 18 8 4.4342 4.7024 3.4971 19 6 5.2285 6.7908 2.8454 20 6 5.6106 7.6232 1.7877 21 6 6.0432 8.9058 2.0465 22 6 6.1002 9.3726 3.3489 23 6 5.7235 8.5577 4.4010 24 6 5.2876 7.2699 4.1593 25 17 4.8145 6.2483 5.4808 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8899 31 1 1.6769 1.9562 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9286 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 5.9039 1.0444 -2.7079 36 1 4.0236 5.5351 0.5803 37 1 5.6964 4.9429 0.7181 38 1 5.5625 7.2629 0.7707 39 1 6.3389 9.5490 1.2307 40 1 6.4406 10.3788 3.5443 41 1 5.7704 8.9295 5.4139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185436823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:12 Heat of formation + Delta-G solvation = -66.076477 kcal Electronic energy + Delta-G solvation = -24786.546032 eV Core-core repulsion = 21078.036467 eV Total energy + Delta-G solvation = -3708.509566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30217 -40.15370 -38.92038 -37.37412 -36.95005 -35.56163 -33.45307 -33.02701 -31.64953 -31.20413 -29.46582 -26.75597 -25.31466 -24.22353 -23.39063 -22.03099 -21.31455 -20.62372 -18.64231 -18.45715 -17.54907 -16.91661 -16.62901 -16.58046 -16.27134 -16.08445 -15.84576 -15.31389 -15.22979 -14.84638 -14.73028 -14.52700 -14.05849 -13.97879 -13.78437 -13.51784 -13.06460 -12.95930 -12.80024 -12.78985 -12.57551 -12.46646 -12.36710 -12.14885 -12.08122 -12.01696 -11.95758 -11.79158 -11.43334 -10.96731 -10.53941 -10.03835 -9.89909 -9.75234 -9.42716 -8.24194 -5.98819 -0.36629 0.22975 1.17924 1.46209 1.52439 1.54637 1.65219 2.08881 2.35412 2.72481 2.73535 3.12068 3.30095 3.73513 4.02160 4.07351 4.08685 4.16582 4.28484 4.34038 4.34448 4.45343 4.53018 4.55418 4.61122 4.80263 4.83927 4.88725 4.94143 4.98645 5.07125 5.16902 5.22258 5.27741 5.35286 5.40659 5.42752 5.49439 5.59834 5.81337 6.05739 6.48093 6.72493 7.19226 7.65528 8.11964 8.78115 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.003921 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.607404 B = 7139.470835 C = 8894.142744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.117 3.883 5 N -0.452 5.452 6 C -0.355 4.355 7 H 0.109 0.891 8 C 0.002 3.998 9 N -0.895 5.895 10 Si 0.983 3.017 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.259 1.259 14 C 0.447 3.553 15 O -0.613 6.613 16 C -0.155 4.155 17 C 0.375 3.625 18 O -0.432 6.432 19 C -0.177 4.177 20 C -0.064 4.064 21 C -0.121 4.121 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.015 4.015 25 Cl -0.068 7.068 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.020 0.980 35 H 0.271 0.729 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.175 0.825 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 15.814 1.923 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.007 4.007 5 N -0.171 5.171 6 C -0.482 4.482 7 H 0.127 0.873 8 C -0.201 4.201 9 N -0.532 5.532 10 Si 0.806 3.194 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.183 1.183 14 C 0.236 3.764 15 O -0.498 6.498 16 C -0.194 4.194 17 C 0.249 3.751 18 O -0.305 6.305 19 C -0.179 4.179 20 C -0.082 4.082 21 C -0.138 4.138 22 C -0.087 4.087 23 C -0.148 4.148 24 C -0.042 4.042 25 Cl -0.039 7.039 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.193 0.807 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.130 14.885 2.946 15.174 hybrid contribution 0.098 -0.599 -0.468 0.767 sum -0.031 14.285 2.478 14.499 Atomic orbital electron populations 1.21706 0.94058 1.02373 1.01766 1.21413 0.97205 0.95262 1.01573 1.21755 0.95638 0.97672 1.00170 1.21350 0.93078 0.84961 1.01313 1.43780 1.55864 1.12175 1.05287 1.19876 1.41963 0.96445 0.89931 0.87315 1.26207 0.93455 0.96340 1.04085 1.70058 1.32619 1.16419 1.34111 0.85098 0.79397 0.77871 0.77000 1.19230 1.21411 1.18277 1.20876 0.81892 0.90101 0.83504 1.90632 1.55894 1.70962 1.32362 1.21710 1.06001 0.94861 0.96847 1.22547 0.74918 0.86775 0.90828 1.90695 1.34742 1.57870 1.47166 1.20437 1.07362 0.96319 0.93746 1.21832 0.93906 0.93713 0.98719 1.21707 0.98475 0.95109 0.98530 1.21848 0.94642 1.00776 0.91421 1.21369 1.00261 0.90771 1.02400 1.21564 1.00842 0.93482 0.88325 1.98405 1.90143 1.68793 1.46574 0.91013 0.93268 0.92280 0.91801 0.92931 0.94812 0.92341 0.88629 0.96148 0.91967 0.84594 0.85128 0.82358 0.81040 0.80731 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.12 -4.11 5.93 30.59 0.18 -3.93 16 3 C -0.11 -4.92 5.51 30.59 0.17 -4.75 16 4 C 0.12 5.93 4.92 86.38 0.42 6.35 16 5 N -0.45 -23.18 2.55 -635.54 -1.62 -24.80 16 6 C -0.36 -17.02 8.70 84.04 0.73 -16.29 16 7 H 0.11 4.63 6.98 -2.91 -0.02 4.61 16 8 C 0.00 0.09 4.94 84.92 0.42 0.51 16 9 N -0.89 -46.69 11.31 21.66 0.24 -46.44 16 10 Si 0.98 36.97 29.60 68.60 2.03 39.00 16 11 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 12 H -0.29 -11.07 7.11 99.48 0.71 -10.37 16 13 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 14 C 0.45 22.85 7.60 87.66 0.67 23.52 16 15 O -0.61 -36.11 13.83 20.37 0.28 -35.83 16 16 C -0.15 -5.97 3.46 29.10 0.10 -5.87 16 17 C 0.37 14.67 7.10 28.01 0.20 14.87 16 18 O -0.43 -20.91 11.80 20.48 0.24 -20.67 16 19 C -0.18 -5.24 5.87 -20.13 -0.12 -5.36 16 20 C -0.06 -1.31 9.47 22.58 0.21 -1.09 16 21 C -0.12 -1.66 10.03 22.23 0.22 -1.43 16 22 C -0.07 -0.89 10.04 22.34 0.22 -0.67 16 23 C -0.13 -2.47 9.82 22.25 0.22 -2.25 16 24 C -0.02 -0.43 6.36 22.66 0.14 -0.28 16 25 Cl -0.07 -2.28 26.03 -2.72 -0.07 -2.35 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.10 5.06 5.34 -2.39 -0.01 5.05 16 34 H 0.02 1.11 7.56 -2.39 -0.02 1.09 16 35 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 36 H 0.14 4.38 7.59 -2.39 -0.02 4.36 16 37 H 0.13 4.62 8.04 -2.39 -0.02 4.60 16 38 H 0.16 2.71 7.05 -2.91 -0.02 2.69 16 39 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -73.80 358.15 6.65 -67.15 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.04 Total: 23.93 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.51 Total: 0.02 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.38 Total: -71.24 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: 0.52 Total: -56.50 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.35 kcal Total: -73.80 6.65 -67.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185436823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.074 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds