Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47069 * 2 1 4 4 N 1.46499 * 109.47157 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99851 * 274.99500 * 4 3 2 6 6 C 1.50702 * 109.46961 * 275.00178 * 5 4 3 7 7 H 1.07997 * 120.00140 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00572 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99752 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47511 * 89.99407 * 10 8 6 12 12 H 1.48494 * 109.47207 * 209.99825 * 10 8 6 13 13 H 1.48504 * 109.46918 * 329.99590 * 10 8 6 14 14 S 1.65600 * 120.00150 * 94.99669 * 4 3 2 15 15 O 1.42095 * 106.40185 * 336.45692 * 14 4 3 16 16 O 1.42100 * 106.40353 * 203.53745 * 14 4 3 17 17 C 1.76199 * 107.21778 * 89.99914 * 14 4 3 18 18 C 1.38961 * 119.68638 * 90.00355 * 17 14 4 19 19 C 1.36594 * 120.81893 * 180.02562 * 18 17 14 20 20 C 1.39293 * 119.84659 * 359.97438 * 19 18 17 21 21 N 1.37034 * 133.84465 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.46588 * 0.02577 * 21 20 19 23 23 N 1.39872 * 109.07457 * 179.75051 * 21 20 19 24 24 C 1.30244 * 110.08717 * 0.24714 * 23 21 20 25 25 C 1.40817 * 119.41963 * 0.15339 * 20 19 18 26 26 C 1.36473 * 119.68365 * 270.39994 * 17 14 4 27 27 H 1.08996 * 109.47339 * 60.00610 * 1 2 3 28 28 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47464 * 300.00394 * 1 2 3 30 30 H 1.08994 * 109.47375 * 239.99473 * 2 1 3 31 31 H 1.09001 * 109.46992 * 119.99048 * 2 1 3 32 32 H 1.08994 * 109.47452 * 59.99520 * 3 2 1 33 33 H 1.09010 * 109.46532 * 299.99612 * 3 2 1 34 34 H 1.08999 * 109.46951 * 34.99719 * 5 4 3 35 35 H 1.08998 * 109.47007 * 155.00359 * 5 4 3 36 36 H 0.97002 * 120.00548 * 180.02562 * 9 8 6 37 37 H 1.08007 * 119.59516 * 359.97438 * 18 17 14 38 38 H 1.07993 * 120.08144 * 180.02562 * 19 18 17 39 39 H 1.08001 * 126.10965 * 179.97438 * 24 23 21 40 40 H 1.07993 * 120.18339 * 359.52138 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.3319 1.2630 6 6 4.3820 2.6986 1.8814 7 1 3.9693 3.5632 1.3829 8 6 5.0417 2.8453 3.0832 9 7 5.5448 1.7926 3.6901 10 14 5.2198 4.5393 3.8502 11 1 4.0597 4.8050 4.7384 12 1 6.4736 4.5940 4.6439 13 1 5.2675 5.5656 2.7779 14 16 4.3324 1.5677 -1.4296 15 8 3.4504 1.1101 -2.4454 16 8 5.6154 1.0012 -1.2013 17 6 4.5930 3.2837 -1.7329 18 6 5.7406 3.9013 -1.2505 19 6 5.9657 5.2303 -1.4716 20 6 5.0372 5.9807 -2.1894 21 7 4.9701 7.2953 -2.5704 22 1 5.6357 7.9729 -2.3737 23 7 3.7909 7.5018 -3.2938 24 6 3.1181 6.3899 -3.3796 25 6 3.8724 5.3572 -2.6767 26 6 3.6620 3.9954 -2.4323 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.6908 0.6806 1.9445 35 1 5.2261 0.9125 1.0742 36 1 6.0086 1.8958 4.5358 37 1 6.4631 3.3236 -0.6930 38 1 6.8618 5.6981 -1.0916 39 1 2.1708 6.2563 -3.8806 40 1 2.7734 3.5079 -2.8050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185979902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = 5.123472 kcal Electronic energy + Delta-G solvation = -25780.176119 eV Core-core repulsion = 22109.090472 eV Total energy + Delta-G solvation = -3671.085647 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28214 -37.17762 -36.73392 -36.32708 -35.22374 -33.16884 -32.53670 -31.80011 -29.95838 -29.61628 -27.41947 -25.03100 -23.33177 -22.70647 -22.36166 -21.76986 -20.98957 -18.55220 -17.97431 -17.22458 -16.80832 -16.33122 -16.10646 -15.42354 -14.92225 -14.86096 -14.48828 -14.38545 -14.12193 -13.63792 -13.60872 -13.35876 -12.93949 -12.50877 -12.28422 -11.98579 -11.76209 -11.64718 -11.55839 -11.32626 -11.29503 -11.14438 -11.01489 -10.99983 -10.82714 -10.54289 -10.48449 -10.43605 -10.28010 -9.96692 -9.75823 -8.76727 -8.51886 -8.26593 -8.02673 -6.13340 -4.19420 0.89105 1.04027 1.26597 2.41987 2.56730 3.21790 3.29668 3.31309 3.47551 3.81678 4.34210 4.35049 4.43762 4.51547 4.77235 4.95655 5.21004 5.22759 5.32333 5.33813 5.41059 5.55299 5.62036 5.65706 5.71716 5.96145 6.13447 6.17768 6.21666 6.25472 6.27848 6.36284 6.36629 6.70470 6.71314 6.79001 7.14686 7.32632 7.41501 7.42072 7.61743 7.84129 8.13111 8.86081 9.46801 10.94563 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.006499 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.602226 B = 4307.434034 C = 6016.129956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.133 3.867 4 N -0.981 5.981 5 C 0.243 3.757 6 C -0.539 4.539 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 S 2.693 3.307 15 O -0.978 6.978 16 O -0.958 6.958 17 C -0.696 4.696 18 C 0.039 3.961 19 C -0.164 4.164 20 C 0.169 3.831 21 N -0.512 5.512 22 H 0.440 0.560 23 N -0.259 5.259 24 C 0.091 3.909 25 C -0.209 4.209 26 C 0.067 3.933 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.200 0.800 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 5.020 -10.544 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.006 3.994 4 N -0.819 5.819 5 C 0.122 3.878 6 C -0.579 4.579 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 S 2.782 3.218 15 O -0.968 6.968 16 O -0.948 6.948 17 C -0.783 4.783 18 C 0.018 3.982 19 C -0.186 4.186 20 C 0.052 3.948 21 N -0.226 5.226 22 H 0.284 0.716 23 N -0.072 5.072 24 C -0.108 4.108 25 C -0.218 4.218 26 C 0.045 3.955 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.217 0.783 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.647 5.582 -11.213 13.360 hybrid contribution 0.471 1.468 1.217 1.965 sum -4.176 7.050 -9.995 12.925 Atomic orbital electron populations 1.21682 0.95820 1.01348 1.01614 1.21984 0.95515 0.98184 1.02790 1.21126 0.79564 0.96272 1.02409 1.57399 1.13810 1.87198 1.23527 1.19264 0.92314 0.97479 0.78780 1.21563 1.36416 0.93774 1.06100 0.91965 1.24904 0.95257 0.96590 0.96876 1.69922 1.36801 1.28881 1.17066 0.86649 0.77654 0.84624 0.79437 1.20636 1.21093 1.19889 1.01865 0.73402 0.73832 0.72713 1.93509 1.66416 1.79484 1.57380 1.93547 1.40433 1.75507 1.85310 1.30796 1.04239 1.28468 1.14762 1.20491 0.93928 0.93523 0.90295 1.19892 1.00125 0.94157 1.04471 1.19033 0.95824 0.85239 0.94745 1.46027 1.20031 1.07624 1.48924 0.71556 1.76559 0.94830 1.23477 1.12317 1.25149 0.99503 0.88373 0.97774 1.19922 0.97367 0.95591 1.08900 1.20116 0.95863 0.90804 0.88736 0.92835 0.92971 0.92689 0.91701 0.91241 0.90013 0.91729 0.93974 0.92834 0.92580 0.83105 0.85021 0.78326 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.15 -2.19 6.26 -26.73 -0.17 -2.36 16 3 C 0.13 2.19 5.34 -4.04 -0.02 2.17 16 4 N -0.98 -19.21 2.77 -115.66 -0.32 -19.53 16 5 C 0.24 5.74 5.44 -5.19 -0.03 5.71 16 6 C -0.54 -13.60 9.38 -34.44 -0.32 -13.93 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 10 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 14 S 2.69 51.34 5.63 -107.50 -0.61 50.73 16 15 O -0.98 -18.50 16.21 -57.17 -0.93 -19.43 16 16 O -0.96 -21.03 15.80 -57.17 -0.90 -21.94 16 17 C -0.70 -12.07 5.94 -39.95 -0.24 -12.30 16 18 C 0.04 0.68 9.44 -39.91 -0.38 0.30 16 19 C -0.16 -2.48 10.03 -39.78 -0.40 -2.88 16 20 C 0.17 2.49 7.34 -84.17 -0.62 1.87 16 21 N -0.51 -6.47 7.37 32.36 0.24 -6.23 16 22 H 0.44 4.17 8.96 -182.77 -1.64 2.53 16 23 N -0.26 -3.38 12.55 31.87 0.40 -2.98 16 24 C 0.09 1.08 12.28 -15.15 -0.19 0.90 16 25 C -0.21 -3.04 6.37 -105.21 -0.67 -3.71 16 26 C 0.07 1.01 9.52 -39.58 -0.38 0.63 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 33 H 0.06 0.93 7.61 -51.92 -0.40 0.53 16 34 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.15 2.66 7.58 -52.48 -0.40 2.27 16 38 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.14 1.80 7.57 -52.49 -0.40 1.41 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -31.96 354.97 -10.72 -42.67 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.53 Total: 3.20 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.13 Total: -23.33 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 1.05 Total: -52.66 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -1.83 Total: -41.36 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 51.34 SS G_CDS: -0.61 Total: 50.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.96 -10.72 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185979902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.798 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds