Wall clock time and date at job start Tue Mar 31 2020 14:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47069 * 2 1 4 4 N 1.46499 * 109.47157 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99851 * 274.99500 * 4 3 2 6 6 C 1.50702 * 109.46961 * 275.00178 * 5 4 3 7 7 H 1.07997 * 120.00140 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00572 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99752 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47511 * 89.99407 * 10 8 6 12 12 H 1.48494 * 109.47207 * 209.99825 * 10 8 6 13 13 H 1.48504 * 109.46918 * 329.99590 * 10 8 6 14 14 S 1.65600 * 120.00150 * 94.99669 * 4 3 2 15 15 O 1.42095 * 106.40185 * 336.45692 * 14 4 3 16 16 O 1.42100 * 106.40353 * 203.53745 * 14 4 3 17 17 C 1.76199 * 107.21778 * 89.99914 * 14 4 3 18 18 C 1.38961 * 119.68638 * 90.00355 * 17 14 4 19 19 C 1.36594 * 120.81893 * 180.02562 * 18 17 14 20 20 C 1.39293 * 119.84659 * 359.97438 * 19 18 17 21 21 N 1.37034 * 133.84465 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.46588 * 0.02577 * 21 20 19 23 23 N 1.39872 * 109.07457 * 179.75051 * 21 20 19 24 24 C 1.30244 * 110.08717 * 0.24714 * 23 21 20 25 25 C 1.40817 * 119.41963 * 0.15339 * 20 19 18 26 26 C 1.36473 * 119.68365 * 270.39994 * 17 14 4 27 27 H 1.08996 * 109.47339 * 60.00610 * 1 2 3 28 28 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47464 * 300.00394 * 1 2 3 30 30 H 1.08994 * 109.47375 * 239.99473 * 2 1 3 31 31 H 1.09001 * 109.46992 * 119.99048 * 2 1 3 32 32 H 1.08994 * 109.47452 * 59.99520 * 3 2 1 33 33 H 1.09010 * 109.46532 * 299.99612 * 3 2 1 34 34 H 1.08999 * 109.46951 * 34.99719 * 5 4 3 35 35 H 1.08998 * 109.47007 * 155.00359 * 5 4 3 36 36 H 0.97002 * 120.00548 * 180.02562 * 9 8 6 37 37 H 1.08007 * 119.59516 * 359.97438 * 18 17 14 38 38 H 1.07993 * 120.08144 * 180.02562 * 19 18 17 39 39 H 1.08001 * 126.10965 * 179.97438 * 24 23 21 40 40 H 1.07993 * 120.18339 * 359.52138 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2379 1.3319 1.2630 6 6 4.3820 2.6986 1.8814 7 1 3.9693 3.5632 1.3829 8 6 5.0417 2.8453 3.0832 9 7 5.5448 1.7926 3.6901 10 14 5.2198 4.5393 3.8502 11 1 4.0597 4.8050 4.7384 12 1 6.4736 4.5940 4.6439 13 1 5.2675 5.5656 2.7779 14 16 4.3324 1.5677 -1.4296 15 8 3.4504 1.1101 -2.4454 16 8 5.6154 1.0012 -1.2013 17 6 4.5930 3.2837 -1.7329 18 6 5.7406 3.9013 -1.2505 19 6 5.9657 5.2303 -1.4716 20 6 5.0372 5.9807 -2.1894 21 7 4.9701 7.2953 -2.5704 22 1 5.6357 7.9729 -2.3737 23 7 3.7909 7.5018 -3.2938 24 6 3.1181 6.3899 -3.3796 25 6 3.8724 5.3572 -2.6767 26 6 3.6620 3.9954 -2.4323 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.6908 0.6806 1.9445 35 1 5.2261 0.9125 1.0742 36 1 6.0086 1.8958 4.5358 37 1 6.4631 3.3236 -0.6930 38 1 6.8618 5.6981 -1.0916 39 1 2.1708 6.2563 -3.8806 40 1 2.7734 3.5079 -2.8050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185979902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:10 Heat of formation + Delta-G solvation = -16.123713 kcal Electronic energy + Delta-G solvation = -25781.097466 eV Core-core repulsion = 22109.090472 eV Total energy + Delta-G solvation = -3672.006994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34681 -38.33795 -38.28273 -37.85823 -36.81304 -34.93011 -33.61679 -33.33060 -31.09350 -30.74977 -29.18408 -26.48792 -24.53764 -24.30045 -23.67411 -22.77358 -22.26646 -19.96159 -19.12954 -18.63761 -18.54454 -18.04192 -17.45162 -16.91671 -16.35095 -15.96958 -15.91280 -15.55926 -15.34045 -15.08505 -14.83407 -14.63890 -14.23419 -14.16789 -13.79434 -13.30006 -13.24123 -13.14219 -13.07315 -12.95400 -12.79269 -12.52574 -12.44347 -12.28443 -12.16948 -12.07485 -11.96950 -11.83542 -11.58321 -11.51198 -11.33984 -10.55433 -9.95083 -9.69370 -9.33982 -8.14397 -6.26576 -0.46463 -0.18234 -0.00983 1.40295 1.41427 1.42038 1.51099 1.59711 2.07511 2.41528 2.52297 2.88998 3.17667 3.26738 3.52691 3.64991 3.70465 4.00846 4.08048 4.18793 4.25476 4.37177 4.42736 4.56379 4.62930 4.81834 4.87788 4.97860 5.02413 5.08694 5.13059 5.27446 5.29418 5.35798 5.37967 5.53459 5.60146 5.63184 5.79977 5.99035 6.14459 6.17152 6.45601 6.85644 7.42939 8.93594 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.006499 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.602226 B = 4307.434034 C = 6016.129956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.123 3.877 4 N -0.986 5.986 5 C 0.259 3.741 6 C -0.536 4.536 7 H 0.067 0.933 8 C 0.017 3.983 9 N -0.926 5.926 10 Si 0.949 3.051 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.266 1.266 14 S 2.701 3.299 15 O -0.977 6.977 16 O -0.997 6.997 17 C -0.710 4.710 18 C 0.012 3.988 19 C -0.162 4.162 20 C 0.161 3.839 21 N -0.504 5.504 22 H 0.452 0.548 23 N -0.271 5.271 24 C 0.106 3.894 25 C -0.221 4.221 26 C 0.073 3.927 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.244 0.756 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 7.485 -11.888 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C -0.002 4.002 4 N -0.824 5.824 5 C 0.136 3.864 6 C -0.575 4.575 7 H 0.085 0.915 8 C -0.183 4.183 9 N -0.566 5.566 10 Si 0.774 3.226 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.190 1.190 14 S 2.794 3.206 15 O -0.968 6.968 16 O -0.987 6.987 17 C -0.801 4.801 18 C -0.010 4.010 19 C -0.185 4.185 20 C 0.042 3.958 21 N -0.219 5.219 22 H 0.299 0.701 23 N -0.083 5.083 24 C -0.092 4.092 25 C -0.230 4.230 26 C 0.051 3.949 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.260 0.740 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.590 8.039 -12.568 16.310 hybrid contribution 1.043 0.772 1.519 1.997 sum -5.548 8.811 -11.049 15.182 Atomic orbital electron populations 1.21655 0.93071 1.02541 1.02633 1.21982 0.97923 0.97003 1.01651 1.21421 0.77668 0.97513 1.03579 1.57292 1.15136 1.87818 1.22106 1.18779 0.91099 0.96459 0.80091 1.21802 1.35503 0.94344 1.05856 0.91505 1.25670 0.95192 0.99861 0.97580 1.70044 1.38014 1.30939 1.17588 0.85695 0.77537 0.80656 0.78676 1.20117 1.21102 1.19005 1.01302 0.72454 0.74487 0.72323 1.93492 1.66153 1.80195 1.56920 1.93493 1.42310 1.77164 1.85754 1.30355 1.05581 1.26981 1.17145 1.20455 0.94194 0.94618 0.91722 1.20044 1.01029 0.93367 1.04033 1.19155 0.95875 0.86216 0.94525 1.46115 1.20331 1.07154 1.48254 0.70077 1.76593 0.94991 1.24069 1.12693 1.25854 1.00330 0.86658 0.96409 1.20237 0.97880 0.95721 1.09189 1.20381 0.95856 0.91196 0.87423 0.91321 0.91770 0.92131 0.92396 0.92912 0.90238 0.89028 0.95632 0.95861 0.92602 0.84887 0.82878 0.74045 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.15 -4.35 6.26 30.59 0.19 -4.16 16 3 C 0.12 3.99 5.34 86.38 0.46 4.45 16 4 N -0.99 -39.34 2.77 -519.84 -1.44 -40.78 16 5 C 0.26 12.75 5.44 85.63 0.47 13.22 16 6 C -0.54 -27.47 9.38 25.60 0.24 -27.23 16 7 H 0.07 3.31 7.81 -2.91 -0.02 3.28 16 8 C 0.02 0.88 5.46 84.66 0.46 1.34 16 9 N -0.93 -52.79 13.29 21.45 0.28 -52.51 16 10 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 14 S 2.70 104.69 5.63 -56.49 -0.32 104.37 16 15 O -0.98 -36.34 16.21 -128.00 -2.07 -38.42 16 16 O -1.00 -46.06 15.80 -128.00 -2.02 -48.09 16 17 C -0.71 -24.34 5.94 22.03 0.13 -24.21 16 18 C 0.01 0.42 9.44 22.06 0.21 0.63 16 19 C -0.16 -4.73 10.03 22.14 0.22 -4.51 16 20 C 0.16 4.38 7.34 39.22 0.29 4.66 16 21 N -0.50 -11.26 7.37 -51.53 -0.38 -11.64 16 22 H 0.45 7.34 8.96 -213.47 -1.91 5.42 16 23 N -0.27 -6.09 12.55 -53.09 -0.67 -6.76 16 24 C 0.11 2.08 12.28 86.92 1.07 3.14 16 25 C -0.22 -5.77 6.37 -20.24 -0.13 -5.90 16 26 C 0.07 2.05 9.52 22.27 0.21 2.26 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.09 2.44 7.61 -2.38 -0.02 2.42 16 34 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 36 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.13 4.99 7.58 -2.91 -0.02 4.97 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.17 3.69 7.57 -2.91 -0.02 3.67 16 Total: -1.00 -69.64 354.97 -0.90 -70.54 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.85 Total: 18.11 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.53 Total: -38.71 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -2.20 Total: -111.68 kcal Atomic # 8 Polarization: -82.41 SS G_CDS: -4.10 Total: -86.50 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 104.69 SS G_CDS: -0.32 Total: 104.37 kcal Total: -69.64 -0.90 -70.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185979902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.419 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds