Wall clock time and date at job start Tue Mar 31 2020 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46892 * 2 1 4 4 N 1.46897 * 109.47101 * 179.85705 * 3 2 1 5 5 C 1.46902 * 111.00040 * 288.58279 * 4 3 2 6 6 C 1.50705 * 109.46922 * 160.34297 * 5 4 3 7 7 H 1.07998 * 120.00364 * 4.89365 * 6 5 4 8 8 C 1.37878 * 119.99702 * 184.88781 * 6 5 4 9 9 N 1.31516 * 120.00102 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00041 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46529 * 90.00346 * 10 8 6 12 12 H 1.48500 * 109.47216 * 209.99790 * 10 8 6 13 13 H 1.48497 * 109.47465 * 330.00650 * 10 8 6 14 14 C 1.46899 * 111.00288 * 164.62728 * 4 3 2 15 15 C 1.50706 * 109.46919 * 293.95577 * 14 4 3 16 16 C 1.38410 * 119.97796 * 269.72417 * 15 14 4 17 17 F 1.35104 * 119.99396 * 0.02562 * 16 15 14 18 18 C 1.38603 * 120.01458 * 179.72604 * 16 15 14 19 19 F 1.35100 * 120.00952 * 180.25018 * 18 16 15 20 20 C 1.38567 * 119.97998 * 0.57342 * 18 16 15 21 21 F 1.35102 * 120.01875 * 179.67971 * 20 18 16 22 22 C 1.38575 * 119.96621 * 359.70067 * 20 18 16 23 23 F 1.35092 * 120.01104 * 179.97438 * 22 20 18 24 24 C 1.38409 * 119.97843 * 89.99758 * 15 14 4 25 25 F 1.35094 * 119.99617 * 0.02562 * 24 15 14 26 26 H 1.09008 * 109.46809 * 299.99805 * 1 2 3 27 27 H 1.08999 * 109.47365 * 59.99924 * 1 2 3 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46834 * 239.99908 * 2 1 3 30 30 H 1.08999 * 109.47365 * 120.00076 * 2 1 3 31 31 H 1.08997 * 109.46984 * 59.86127 * 3 2 1 32 32 H 1.08996 * 109.47115 * 299.85642 * 3 2 1 33 33 H 1.08991 * 109.47161 * 280.34314 * 5 4 3 34 34 H 1.09000 * 109.47029 * 40.34931 * 5 4 3 35 35 H 0.97001 * 120.00046 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46760 * 53.95513 * 14 4 3 37 37 H 1.08992 * 109.47307 * 173.95712 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4426 0.0035 5 6 4.0324 1.0067 1.3050 6 6 5.4620 0.5569 1.1464 7 1 5.9596 0.6650 0.1940 8 6 6.1346 0.0075 2.2172 9 7 7.3823 -0.3846 2.0790 10 14 5.2741 -0.1787 3.8648 11 1 4.6032 -1.5022 3.9259 12 1 6.2731 -0.0793 4.9590 13 1 4.2620 0.8969 4.0191 14 6 4.0363 2.7646 -0.3600 15 6 3.6810 3.0708 -1.7922 16 6 4.5444 2.7084 -2.8115 17 9 5.7049 2.0800 -2.5222 18 6 4.2159 2.9844 -4.1294 19 9 5.0564 2.6261 -5.1246 20 6 3.0283 3.6340 -4.4255 21 9 2.7103 3.9093 -5.7094 22 6 2.1671 4.0015 -3.4039 23 9 1.0092 4.6353 -3.6915 24 6 2.4943 3.7191 -2.0870 25 9 1.6551 4.0778 -1.0910 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6746 1.9570 0.8887 32 1 1.6787 1.9556 -0.8912 33 1 3.9886 1.8363 2.0105 34 1 3.4305 0.1787 1.6798 35 1 7.8554 -0.7714 2.8323 36 1 3.6004 3.5214 0.2922 37 1 5.1202 2.7674 -0.2459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203365626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:09 Heat of formation + Delta-G solvation = -187.393639 kcal Electronic energy + Delta-G solvation = -28347.603425 eV Core-core repulsion = 23540.179732 eV Total energy + Delta-G solvation = -4807.423693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.22331 -49.90390 -49.45372 -48.91340 -48.55491 -39.18081 -37.20555 -33.35296 -32.66224 -31.15582 -30.27047 -27.97007 -26.73633 -24.28452 -23.66320 -22.37114 -21.58484 -19.97482 -19.22016 -18.98683 -18.20283 -17.58116 -16.95804 -16.89071 -16.67316 -16.24822 -16.16121 -15.94811 -15.28499 -15.20733 -15.04044 -14.90901 -14.72384 -14.55874 -14.26049 -14.18196 -13.83302 -13.32461 -13.03652 -12.67531 -12.40295 -12.15576 -12.07311 -11.77262 -11.67648 -11.47864 -11.23279 -10.77233 -10.69886 -10.52916 -10.12657 -9.94694 -9.43914 -9.13970 -9.02198 -8.61014 -7.62644 -6.09595 -4.07611 0.08846 0.12707 2.41089 2.64357 3.23812 3.27396 3.32069 3.32864 3.47478 3.71678 3.89688 3.95044 4.36771 4.54168 4.57724 4.91779 4.94191 5.20598 5.21578 5.27192 5.36727 5.43600 5.62389 5.71772 5.77124 5.92186 6.04060 6.07335 6.18016 6.22282 6.44113 6.61385 6.68920 6.77661 7.49972 7.68313 7.81029 8.56900 9.00530 9.51331 11.03301 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.004629 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.655178 B = 6047.964855 C = 7214.375365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.046 3.954 4 N -0.519 5.519 5 C 0.162 3.838 6 C -0.511 4.511 7 H 0.084 0.916 8 C 0.071 3.929 9 N -0.896 5.896 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.095 3.905 15 C -0.091 4.091 16 C 0.149 3.851 17 F -0.085 7.085 18 C 0.052 3.948 19 F -0.104 7.104 20 C 0.085 3.915 21 F -0.103 7.103 22 C 0.049 3.951 23 F -0.107 7.107 24 C 0.121 3.879 25 F -0.103 7.103 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.058 0.942 33 H -0.008 1.008 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.052 0.948 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 8.651 -10.094 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.082 4.082 4 N -0.243 5.243 5 C 0.037 3.963 6 C -0.550 4.550 7 H 0.102 0.898 8 C -0.131 4.131 9 N -0.535 5.535 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.032 4.032 15 C -0.094 4.094 16 C 0.127 3.873 17 F -0.063 7.063 18 C 0.030 3.970 19 F -0.082 7.082 20 C 0.063 3.937 21 F -0.081 7.081 22 C 0.028 3.972 23 F -0.085 7.085 24 C 0.100 3.900 25 F -0.081 7.081 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.010 0.990 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.064 8.235 -10.368 17.255 hybrid contribution -0.741 0.428 1.199 1.473 sum -11.805 8.663 -9.169 17.277 Atomic orbital electron populations 1.21743 0.96356 1.01297 1.01259 1.21514 0.94306 0.96691 1.03306 1.22288 0.89132 0.97106 0.99695 1.62075 1.05299 1.22542 1.34385 1.20263 0.97073 0.94822 0.84133 1.21020 0.94384 1.40360 0.99192 0.89842 1.24874 0.94741 0.95071 0.98398 1.69888 1.10148 1.41915 1.31560 0.86940 0.79758 0.79031 0.84477 1.20116 1.21159 1.19330 1.20975 1.03865 0.92019 0.86372 1.20011 0.91928 0.98347 0.99105 1.16729 0.85056 0.95971 0.89508 1.91725 1.43007 1.78074 1.93464 1.17164 0.90096 1.04693 0.85047 1.91611 1.68619 1.89530 1.58441 1.16701 0.93899 1.03453 0.79633 1.91605 1.92315 1.91482 1.32735 1.17028 0.85847 1.03341 0.91015 1.91591 1.44133 1.79019 1.93783 1.16729 0.89778 1.00471 0.83064 1.91598 1.68886 1.89161 1.58455 0.93105 0.93175 0.92801 0.91255 0.91356 0.95221 0.92313 0.99013 0.94941 0.92613 0.92972 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.84 5.99 -26.73 -0.16 -2.00 16 3 C 0.05 0.74 4.35 -3.82 -0.02 0.72 16 4 N -0.52 -9.87 4.38 -237.52 -1.04 -10.91 16 5 C 0.16 3.65 3.66 -4.97 -0.02 3.63 16 6 C -0.51 -13.69 9.17 -34.44 -0.32 -14.01 16 7 H 0.08 2.44 7.90 -52.49 -0.41 2.03 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 10 Si 0.87 20.63 27.37 -169.99 -4.65 15.98 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.10 6.68 56.52 0.38 -5.72 16 14 C 0.10 1.59 4.61 -4.97 -0.02 1.57 16 15 C -0.09 -1.28 4.94 -104.49 -0.52 -1.79 16 16 C 0.15 2.11 7.24 -39.38 -0.29 1.82 16 17 F -0.09 -1.43 16.38 2.25 0.04 -1.39 16 18 C 0.05 0.65 7.31 -39.33 -0.29 0.37 16 19 F -0.10 -1.38 17.09 2.25 0.04 -1.34 16 20 C 0.08 1.00 7.31 -39.34 -0.29 0.71 16 21 F -0.10 -1.22 17.09 2.25 0.04 -1.18 16 22 C 0.05 0.58 7.31 -39.32 -0.29 0.29 16 23 F -0.11 -1.27 17.09 2.25 0.04 -1.23 16 24 C 0.12 1.52 5.90 -39.38 -0.23 1.29 16 25 F -0.10 -1.33 14.78 2.25 0.03 -1.29 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.14 6.50 -51.93 -0.34 0.81 16 31 H 0.03 0.47 8.06 -51.93 -0.42 0.06 16 32 H 0.06 0.86 4.64 -51.93 -0.24 0.62 16 33 H -0.01 -0.18 7.39 -51.93 -0.38 -0.56 16 34 H 0.03 0.73 5.37 -51.93 -0.28 0.46 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.81 7.61 -51.93 -0.40 0.41 16 37 H 0.12 2.13 6.80 -51.93 -0.35 1.77 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -27.96 327.38 -5.63 -33.59 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -3.67 Total: -4.37 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.16 Total: -6.97 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.27 Total: -36.73 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.19 Total: -6.43 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.65 Total: 15.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.96 -5.63 -33.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203365626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.799 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds