Wall clock time and date at job start Tue Mar 31 2020 13:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46851 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99888 * 90.00348 * 5 4 3 7 7 H 1.07995 * 120.00133 * 17.31855 * 6 5 4 8 8 C 1.38811 * 119.99635 * 197.59740 * 6 5 4 9 9 N 1.31621 * 120.00068 * 40.82277 * 8 6 5 10 10 Si 1.86802 * 119.99837 * 220.82167 * 8 6 5 11 11 H 1.48504 * 109.46949 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46976 * 119.99576 * 10 8 6 13 13 H 1.48496 * 109.47322 * 240.00081 * 10 8 6 14 14 C 1.46500 * 119.99985 * 269.99622 * 5 4 3 15 15 C 1.50699 * 109.47372 * 272.54749 * 14 5 4 16 16 C 1.38414 * 119.97920 * 256.37460 * 15 14 5 17 17 F 1.35099 * 119.98797 * 0.02562 * 16 15 14 18 18 C 1.38593 * 120.01835 * 179.72449 * 16 15 14 19 19 F 1.35096 * 120.01316 * 180.25515 * 18 16 15 20 20 C 1.38571 * 119.97853 * 0.56777 * 18 16 15 21 21 F 1.35106 * 120.02110 * 179.68183 * 20 18 16 22 22 C 1.38568 * 119.96493 * 359.70864 * 20 18 16 23 23 F 1.35102 * 120.01228 * 179.97438 * 22 20 18 24 24 C 1.38408 * 119.98309 * 76.64480 * 15 14 5 25 25 F 1.35100 * 119.99208 * 0.02562 * 24 15 14 26 26 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47080 * 299.99533 * 1 2 3 28 28 H 1.09003 * 109.46675 * 59.99715 * 1 2 3 29 29 H 1.09006 * 109.47246 * 240.00386 * 2 1 3 30 30 H 1.08995 * 109.47303 * 120.00195 * 2 1 3 31 31 H 1.09006 * 109.46731 * 60.00071 * 3 2 1 32 32 H 1.08995 * 109.47177 * 300.00272 * 3 2 1 33 33 H 1.09000 * 109.46880 * 59.99813 * 4 3 2 34 34 H 1.09003 * 109.46675 * 300.00285 * 4 3 2 35 35 H 0.97001 * 119.99601 * 174.85042 * 9 8 6 36 36 H 1.09002 * 109.46589 * 32.54323 * 14 5 4 37 37 H 1.08994 * 109.46975 * 152.54424 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2861 3.4689 1.1875 7 1 4.3805 2.9013 2.1014 8 6 4.3898 4.8528 1.2160 9 7 3.5758 5.5889 0.4894 10 14 5.6847 5.6705 2.2857 11 1 6.4677 4.6291 2.9983 12 1 6.5948 6.4761 1.4326 13 1 5.0214 6.5561 3.2762 14 6 4.3031 3.5147 -1.2672 15 6 5.7070 3.2271 -1.7332 16 6 6.6929 4.1884 -1.5931 17 9 6.3963 5.3840 -1.0382 18 6 7.9856 3.9227 -2.0163 19 9 8.9490 4.8592 -1.8748 20 6 8.2883 2.6984 -2.5904 21 9 9.5468 2.4408 -3.0091 22 6 7.2995 1.7386 -2.7355 23 9 7.5934 0.5448 -3.2957 24 6 6.0086 2.0038 -2.3062 25 9 5.0443 1.0683 -2.4479 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.5979 6.5557 0.5656 36 1 3.5927 3.1630 -2.0154 37 1 4.1800 4.5884 -1.1256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203371274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:52 Heat of formation + Delta-G solvation = -175.346050 kcal Electronic energy + Delta-G solvation = -28731.030708 eV Core-core repulsion = 23924.129438 eV Total energy + Delta-G solvation = -4806.901270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.76676 -49.45042 -48.96705 -48.44842 -48.11246 -38.43978 -36.47182 -34.25628 -31.80951 -30.86157 -29.72292 -28.02154 -26.15883 -24.14677 -23.11583 -22.55556 -21.00003 -20.15903 -18.75228 -18.55305 -17.87601 -17.18077 -16.82631 -16.43590 -16.17371 -15.80417 -15.72372 -15.43521 -15.00555 -14.90996 -14.75119 -14.62604 -14.30029 -14.14959 -14.01865 -13.89455 -13.55869 -13.36694 -12.79039 -12.29438 -12.20682 -11.84865 -11.68787 -11.53622 -11.13736 -11.08633 -10.83723 -10.65645 -10.56002 -10.42912 -10.34503 -10.03315 -9.78110 -8.78314 -8.56021 -8.51745 -7.18863 -6.24266 -3.31072 0.61070 0.63761 2.93762 3.18686 3.27426 3.39343 3.41450 3.83089 3.98563 4.26032 4.30259 4.45018 4.57700 4.93779 5.08328 5.12289 5.37266 5.50185 5.55338 5.59800 5.61584 5.91406 5.93164 5.98797 6.14042 6.24423 6.30315 6.33295 6.43467 6.51729 6.58584 6.72988 6.89533 7.06510 7.21855 7.60091 8.01361 8.77422 9.48648 9.96270 10.79126 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.006733 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.834980 B = 4157.773656 C = 6372.925839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.128 3.872 5 N -0.563 5.563 6 C -0.272 4.272 7 H 0.079 0.921 8 C 0.023 3.977 9 N -0.845 5.845 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.275 1.275 13 H -0.289 1.289 14 C 0.162 3.838 15 C -0.110 4.110 16 C 0.122 3.878 17 F -0.095 7.095 18 C 0.052 3.948 19 F -0.114 7.114 20 C 0.054 3.946 21 F -0.113 7.113 22 C 0.047 3.953 23 F -0.115 7.115 24 C 0.114 3.886 25 F -0.106 7.106 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -6.086 -6.053 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.173 4.173 4 C 0.003 3.997 5 N -0.277 5.277 6 C -0.399 4.399 7 H 0.097 0.903 8 C -0.180 4.180 9 N -0.483 5.483 10 Si 0.697 3.303 11 H -0.199 1.199 12 H -0.201 1.201 13 H -0.216 1.216 14 C 0.034 3.966 15 C -0.118 4.118 16 C 0.099 3.901 17 F -0.073 7.073 18 C 0.030 3.970 19 F -0.092 7.092 20 C 0.031 3.969 21 F -0.091 7.091 22 C 0.025 3.975 23 F -0.094 7.094 24 C 0.092 3.908 25 F -0.085 7.085 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.205 -5.918 -6.035 8.735 hybrid contribution 1.094 0.400 0.559 1.292 sum 3.299 -5.518 -5.476 8.445 Atomic orbital electron populations 1.21756 0.96619 1.00572 1.01687 1.21509 0.95224 0.98223 1.01147 1.22111 0.98408 0.94533 1.02208 1.21324 0.92172 0.85977 1.00264 1.44090 1.70955 1.10713 1.01951 1.19225 1.44445 0.89239 0.86959 0.90313 1.24679 0.98666 0.96338 0.98363 1.70087 1.31325 1.05929 1.41005 0.86754 0.83729 0.79730 0.80078 1.19894 1.20103 1.21590 1.20253 0.84781 1.04495 0.87032 1.21264 1.03454 0.90730 0.96337 1.16766 0.90213 0.83928 0.99199 1.91638 1.93207 1.40763 1.81670 1.17253 0.86093 0.87227 1.06422 1.91548 1.61187 1.62621 1.93846 1.16501 0.80689 0.93274 1.06460 1.91542 1.35569 1.94054 1.87982 1.17081 0.92064 0.83316 1.05048 1.91540 1.93651 1.41522 1.82663 1.16727 0.83655 0.88067 1.02326 1.91466 1.60839 1.62946 1.93206 0.93585 0.92926 0.93038 0.92688 0.92616 0.91811 0.92796 0.92380 0.93526 0.92596 0.92792 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.51 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.13 -2.32 5.54 -26.73 -0.15 -2.47 16 4 C 0.13 2.42 5.68 -4.04 -0.02 2.40 16 5 N -0.56 -12.43 2.51 -174.61 -0.44 -12.87 16 6 C -0.27 -6.71 9.50 -15.06 -0.14 -6.85 16 7 H 0.08 1.97 8.04 -52.49 -0.42 1.55 16 8 C 0.02 0.58 4.13 -17.43 -0.07 0.51 16 9 N -0.85 -21.67 11.49 55.49 0.64 -21.03 16 10 Si 0.87 20.25 28.85 -169.99 -4.90 15.34 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.16 3.37 5.12 -5.19 -0.03 3.35 16 15 C -0.11 -2.06 5.47 -104.50 -0.57 -2.63 16 16 C 0.12 2.31 7.25 -39.39 -0.29 2.03 16 17 F -0.09 -2.02 14.82 2.25 0.03 -1.98 16 18 C 0.05 0.90 7.31 -39.33 -0.29 0.61 16 19 F -0.11 -1.98 17.09 2.25 0.04 -1.94 16 20 C 0.05 0.87 7.31 -39.34 -0.29 0.58 16 21 F -0.11 -1.78 17.09 2.25 0.04 -1.74 16 22 C 0.05 0.75 7.31 -39.33 -0.29 0.46 16 23 F -0.12 -1.80 17.09 2.25 0.04 -1.76 16 24 C 0.11 1.94 7.24 -39.39 -0.29 1.65 16 25 F -0.11 -1.77 13.69 2.25 0.03 -1.74 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.03 4.88 -51.93 -0.25 0.78 16 34 H 0.05 0.89 8.02 -51.93 -0.42 0.47 16 35 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 36 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 37 H 0.13 3.04 4.22 -51.93 -0.22 2.82 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -24.33 330.14 -5.58 -29.91 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.82 Total: -3.41 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.20 Total: -33.90 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 0.18 Total: -9.16 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.90 Total: 15.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -24.33 -5.58 -29.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203371274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.434 kcal (2) G-P(sol) polarization free energy of solvation -24.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds