Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46851 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99888 * 90.00348 * 5 4 3 7 7 H 1.07995 * 120.00133 * 17.31855 * 6 5 4 8 8 C 1.38811 * 119.99635 * 197.59740 * 6 5 4 9 9 N 1.31621 * 120.00068 * 40.82277 * 8 6 5 10 10 Si 1.86802 * 119.99837 * 220.82167 * 8 6 5 11 11 H 1.48504 * 109.46949 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46976 * 119.99576 * 10 8 6 13 13 H 1.48496 * 109.47322 * 240.00081 * 10 8 6 14 14 C 1.46500 * 119.99985 * 269.99622 * 5 4 3 15 15 C 1.50699 * 109.47372 * 272.54749 * 14 5 4 16 16 C 1.38414 * 119.97920 * 256.37460 * 15 14 5 17 17 F 1.35099 * 119.98797 * 0.02562 * 16 15 14 18 18 C 1.38593 * 120.01835 * 179.72449 * 16 15 14 19 19 F 1.35096 * 120.01316 * 180.25515 * 18 16 15 20 20 C 1.38571 * 119.97853 * 0.56777 * 18 16 15 21 21 F 1.35106 * 120.02110 * 179.68183 * 20 18 16 22 22 C 1.38568 * 119.96493 * 359.70864 * 20 18 16 23 23 F 1.35102 * 120.01228 * 179.97438 * 22 20 18 24 24 C 1.38408 * 119.98309 * 76.64480 * 15 14 5 25 25 F 1.35100 * 119.99208 * 0.02562 * 24 15 14 26 26 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47080 * 299.99533 * 1 2 3 28 28 H 1.09003 * 109.46675 * 59.99715 * 1 2 3 29 29 H 1.09006 * 109.47246 * 240.00386 * 2 1 3 30 30 H 1.08995 * 109.47303 * 120.00195 * 2 1 3 31 31 H 1.09006 * 109.46731 * 60.00071 * 3 2 1 32 32 H 1.08995 * 109.47177 * 300.00272 * 3 2 1 33 33 H 1.09000 * 109.46880 * 59.99813 * 4 3 2 34 34 H 1.09003 * 109.46675 * 300.00285 * 4 3 2 35 35 H 0.97001 * 119.99601 * 174.85042 * 9 8 6 36 36 H 1.09002 * 109.46589 * 32.54323 * 14 5 4 37 37 H 1.08994 * 109.46975 * 152.54424 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2861 3.4689 1.1875 7 1 4.3805 2.9013 2.1014 8 6 4.3898 4.8528 1.2160 9 7 3.5758 5.5889 0.4894 10 14 5.6847 5.6705 2.2857 11 1 6.4677 4.6291 2.9983 12 1 6.5948 6.4761 1.4326 13 1 5.0214 6.5561 3.2762 14 6 4.3031 3.5147 -1.2672 15 6 5.7070 3.2271 -1.7332 16 6 6.6929 4.1884 -1.5931 17 9 6.3963 5.3840 -1.0382 18 6 7.9856 3.9227 -2.0163 19 9 8.9490 4.8592 -1.8748 20 6 8.2883 2.6984 -2.5904 21 9 9.5468 2.4408 -3.0091 22 6 7.2995 1.7386 -2.7355 23 9 7.5934 0.5448 -3.2957 24 6 6.0086 2.0038 -2.3062 25 9 5.0443 1.0683 -2.4479 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 3.5979 6.5557 0.5656 36 1 3.5927 3.1630 -2.0154 37 1 4.1800 4.5884 -1.1256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203371274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = -184.316085 kcal Electronic energy + Delta-G solvation = -28731.419678 eV Core-core repulsion = 23924.129438 eV Total energy + Delta-G solvation = -4807.290240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.16668 -50.88316 -50.43117 -49.90943 -49.54876 -39.96529 -38.00512 -35.61763 -33.50476 -32.33543 -31.19804 -29.42572 -27.80152 -25.66887 -24.58216 -24.00271 -22.37818 -21.60739 -20.21768 -20.00142 -19.37458 -18.72615 -18.36709 -17.86766 -17.62377 -17.26175 -17.20217 -16.89934 -16.71879 -16.29705 -16.12055 -16.08183 -15.67500 -15.64024 -15.55890 -15.44502 -15.19276 -14.59888 -14.26315 -13.73177 -13.53851 -13.33875 -13.21377 -13.11259 -12.71343 -12.57614 -12.45481 -12.24748 -12.10303 -11.88068 -11.77955 -11.57325 -11.21569 -10.51965 -10.05551 -9.98922 -8.91865 -8.05365 -5.19994 -0.82771 -0.79226 1.36362 1.50249 1.51391 1.53129 1.72319 2.35220 2.46322 2.53964 2.81250 2.97656 3.00475 3.16595 3.60665 3.62399 4.06161 4.07198 4.20223 4.28174 4.41650 4.46554 4.50500 4.60790 4.81187 4.92730 5.03994 5.09368 5.10571 5.20444 5.23353 5.40495 5.51161 5.53963 5.66554 5.75573 6.26566 7.01378 7.77336 8.22181 8.98376 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.006733 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.834980 B = 4157.773656 C = 6372.925839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.124 4.124 4 C 0.128 3.872 5 N -0.581 5.581 6 C -0.282 4.282 7 H 0.066 0.934 8 C -0.003 4.003 9 N -0.877 5.877 10 Si 0.900 3.100 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.294 1.294 14 C 0.164 3.836 15 C -0.106 4.106 16 C 0.115 3.885 17 F -0.111 7.111 18 C 0.055 3.945 19 F -0.112 7.112 20 C 0.085 3.915 21 F -0.102 7.102 22 C 0.065 3.935 23 F -0.104 7.104 24 C 0.128 3.872 25 F -0.099 7.099 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.258 0.742 36 H 0.064 0.936 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -8.178 -7.629 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.164 4.164 4 C 0.003 3.997 5 N -0.299 5.299 6 C -0.410 4.410 7 H 0.084 0.916 8 C -0.203 4.203 9 N -0.519 5.519 10 Si 0.729 3.271 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.222 1.222 14 C 0.036 3.964 15 C -0.112 4.112 16 C 0.093 3.907 17 F -0.089 7.089 18 C 0.033 3.967 19 F -0.090 7.090 20 C 0.063 3.937 21 F -0.080 7.080 22 C 0.043 3.957 23 F -0.082 7.082 24 C 0.106 3.894 25 F -0.078 7.078 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.528 -8.040 -7.654 11.648 hybrid contribution 0.898 0.916 0.787 1.505 sum 4.426 -7.124 -6.867 10.840 Atomic orbital electron populations 1.21739 0.95437 1.01908 1.01379 1.21460 0.96261 0.95720 1.02029 1.21991 0.97641 0.96554 1.00206 1.21420 0.92814 0.84826 1.00618 1.44157 1.73164 1.11258 1.01283 1.19181 1.44640 0.89335 0.87845 0.91571 1.24880 0.99482 0.96633 0.99320 1.70131 1.32940 1.05438 1.43385 0.86279 0.82740 0.78980 0.79094 1.20039 1.20847 1.22156 1.20053 0.86092 1.03103 0.87125 1.21112 1.01997 0.91231 0.96905 1.16970 0.91024 0.83618 0.99094 1.91609 1.93413 1.41741 1.82110 1.17132 0.85486 0.87670 1.06396 1.91563 1.60920 1.62696 1.93825 1.16409 0.80881 0.92359 1.04101 1.91593 1.34997 1.93870 1.87575 1.16881 0.91367 0.83422 1.03998 1.91589 1.93476 1.40889 1.82287 1.16583 0.84141 0.87277 1.01364 1.91488 1.60733 1.62533 1.92999 0.91385 0.93621 0.93052 0.91349 0.92087 0.94706 0.93841 0.90963 0.93907 0.93212 0.91767 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.10 5.93 30.60 0.18 -2.92 16 3 C -0.12 -4.33 5.54 30.60 0.17 -4.16 16 4 C 0.13 4.77 5.68 86.38 0.49 5.26 16 5 N -0.58 -25.86 2.51 -706.34 -1.77 -27.64 16 6 C -0.28 -14.25 9.50 84.03 0.80 -13.46 16 7 H 0.07 3.43 8.04 -2.91 -0.02 3.40 16 8 C 0.00 -0.13 4.13 84.86 0.35 0.22 16 9 N -0.88 -46.68 11.49 21.65 0.25 -46.43 16 10 Si 0.90 42.48 28.85 68.60 1.98 44.46 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 14 C 0.16 6.82 5.12 85.63 0.44 7.25 16 15 C -0.11 -3.83 5.47 -19.78 -0.11 -3.94 16 16 C 0.12 4.21 7.25 22.40 0.16 4.38 16 17 F -0.11 -4.71 14.82 44.97 0.67 -4.04 16 18 C 0.05 1.75 7.31 22.43 0.16 1.92 16 19 F -0.11 -3.62 17.09 44.97 0.77 -2.85 16 20 C 0.08 2.41 7.31 22.43 0.16 2.57 16 21 F -0.10 -2.77 17.09 44.97 0.77 -2.00 16 22 C 0.07 1.82 7.31 22.43 0.16 1.99 16 23 F -0.10 -2.77 17.09 44.97 0.77 -2.00 16 24 C 0.13 3.96 7.24 22.40 0.16 4.12 16 25 F -0.10 -2.98 13.69 44.97 0.62 -2.37 16 26 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.44 4.88 -2.39 -0.01 2.43 16 34 H 0.04 1.61 8.02 -2.39 -0.02 1.59 16 35 H 0.26 13.42 8.32 -92.71 -0.77 12.64 16 36 H 0.06 2.48 7.99 -2.39 -0.02 2.46 16 37 H 0.11 5.07 4.22 -2.39 -0.01 5.06 16 Total: -1.00 -52.25 330.14 9.02 -43.23 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.13 Total: -0.84 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 3.85 Total: 0.49 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.52 Total: -74.07 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 3.59 Total: -13.27 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.98 Total: 44.46 kcal Total: -52.25 9.02 -43.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203371274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.091 kcal (2) G-P(sol) polarization free energy of solvation -52.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds