Wall clock time and date at job start Tue Mar 31 2020 14:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 N 1.46501 * 109.46831 * 119.99572 * 2 1 3 5 5 C 1.34775 * 120.00221 * 85.00528 * 4 2 1 6 6 S 1.71201 * 119.99843 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00458 * 179.97438 * 5 4 2 8 8 N 1.40104 * 119.99742 * 359.97438 * 7 5 4 9 9 C 1.34782 * 119.99661 * 180.27013 * 8 7 5 10 10 O 1.21584 * 120.00060 * 359.73436 * 9 8 7 11 11 C 1.47532 * 119.99654 * 179.72137 * 9 8 7 12 12 C 1.39670 * 120.19847 * 0.02562 * 11 9 8 13 13 C 1.37834 * 119.92005 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32158 * 0.02562 * 13 12 11 15 15 C 1.38025 * 120.40477 * 359.97438 * 14 13 12 16 16 C 1.38836 * 120.06952 * 359.74309 * 15 14 13 17 17 O 1.35524 * 120.16258 * 180.25362 * 16 15 14 18 18 C 1.34823 * 116.99900 * 354.40680 * 17 16 15 19 19 H 1.08001 * 119.99516 * 5.05240 * 18 17 16 20 20 C 1.38697 * 119.99982 * 185.06369 * 18 17 16 21 21 N 1.31521 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99934 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47267 * 59.99753 * 22 20 18 24 24 H 1.48501 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47324 * 299.99402 * 22 20 18 26 26 H 1.09004 * 109.46711 * 60.00561 * 1 2 3 27 27 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47533 * 300.00102 * 1 2 3 29 29 H 1.08997 * 109.47492 * 239.99422 * 2 1 3 30 30 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46999 * 299.99262 * 3 2 1 32 32 H 1.08997 * 109.47538 * 59.99451 * 3 2 1 33 33 H 0.97000 * 120.00327 * 264.99995 * 4 2 1 34 34 H 0.97001 * 120.00382 * 179.97438 * 7 5 4 35 35 H 0.96991 * 119.99878 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.03780 * 359.95732 * 12 11 9 37 37 H 1.08000 * 119.83788 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.79693 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.96690 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99766 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1946 6 16 1.7395 -2.9294 -0.2053 7 7 2.5967 -2.6674 2.2948 8 7 2.9308 -1.9330 3.4403 9 6 3.3857 -2.5678 4.5388 10 8 3.5015 -3.7781 4.5373 11 6 3.7433 -1.7940 5.7429 12 6 3.6116 -0.4035 5.7491 13 6 3.9469 0.3138 6.8774 14 6 4.4152 -0.3378 8.0071 15 6 4.5505 -1.7114 8.0156 16 6 4.2121 -2.4507 6.8902 17 8 4.3393 -3.8000 6.8983 18 6 4.9089 -4.3546 7.9872 19 1 5.1652 -3.7377 8.8358 20 6 5.1658 -5.7172 8.0174 21 7 4.8534 -6.4684 6.9840 22 14 5.9555 -6.4854 9.5259 23 1 5.0878 -6.2576 10.7092 24 1 6.1220 -7.9450 9.3084 25 1 7.2842 -5.8647 9.7594 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 2.2490 -0.1822 1.9895 34 1 2.6891 -3.6330 2.2937 35 1 2.8381 -0.9675 3.4415 36 1 3.2478 0.1090 4.8709 37 1 3.8450 1.3889 6.8806 38 1 4.6758 0.2325 8.8863 39 1 4.9157 -2.2121 8.9001 40 1 5.0328 -7.4214 7.0054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251220333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:11 Heat of formation + Delta-G solvation = 22.664519 kcal Electronic energy + Delta-G solvation = -24523.046887 eV Core-core repulsion = 20852.721878 eV Total energy + Delta-G solvation = -3670.325010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43759 -39.36908 -38.19733 -36.64418 -36.17279 -32.95956 -32.54593 -31.42521 -29.93341 -29.18503 -27.58891 -25.63079 -24.32766 -23.09539 -22.31886 -21.67018 -20.71545 -19.38327 -18.35239 -18.17867 -17.16544 -16.42945 -15.99635 -15.61422 -15.31794 -14.87456 -14.73713 -14.63750 -14.46289 -14.12846 -14.02657 -13.64978 -13.16664 -13.03888 -12.78185 -12.67943 -12.48506 -11.88933 -11.81329 -11.54995 -11.41089 -11.40186 -11.22289 -11.05259 -11.04963 -10.60991 -10.59747 -9.92495 -9.40527 -9.05751 -8.79360 -8.56959 -7.72038 -7.59159 -7.55517 -6.63645 -4.23969 1.20749 1.36363 1.44788 2.07017 2.17841 2.57781 3.01280 3.03214 3.06879 3.29721 3.78152 4.27469 4.33854 4.48122 4.68180 4.79520 4.90319 4.93540 4.94323 5.21956 5.24538 5.31360 5.45861 5.47282 5.57838 5.66116 5.71049 5.84977 6.00538 6.07067 6.22087 6.29245 6.36983 6.58464 6.69422 6.82151 6.99576 7.07249 7.19505 7.37596 7.42712 7.73920 8.50252 8.75437 9.41688 10.49183 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003207 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.358923 B = 8728.095548 C =10298.190809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 C -0.164 4.164 4 N -0.686 5.686 5 C 0.566 3.434 6 S -0.625 6.625 7 N -0.456 5.456 8 N -0.563 5.563 9 C 0.561 3.439 10 O -0.483 6.483 11 C -0.228 4.228 12 C -0.037 4.037 13 C -0.227 4.227 14 C -0.045 4.045 15 C -0.230 4.230 16 C 0.190 3.810 17 O -0.119 6.119 18 C -0.405 4.405 19 H 0.097 0.903 20 C 0.046 3.954 21 N -0.826 5.826 22 Si 0.944 3.056 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.267 1.267 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.460 0.540 35 H 0.411 0.589 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 17.152 -5.415 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 C -0.221 4.221 4 N -0.319 5.319 5 C 0.203 3.797 6 S -0.501 6.501 7 N -0.183 5.183 8 N -0.317 5.317 9 C 0.352 3.648 10 O -0.353 6.353 11 C -0.235 4.235 12 C -0.056 4.056 13 C -0.246 4.246 14 C -0.064 4.064 15 C -0.250 4.250 16 C 0.129 3.871 17 O -0.016 6.016 18 C -0.480 4.480 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.456 5.456 22 Si 0.767 3.233 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.192 1.192 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.310 0.690 35 H 0.253 0.747 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.113 15.297 -6.463 17.108 hybrid contribution 0.688 0.594 1.979 2.178 sum -3.425 15.891 -4.483 16.862 Atomic orbital electron populations 1.22192 0.94142 1.04012 1.02018 1.21447 0.95167 0.92347 0.87707 1.22133 1.01977 0.94663 1.03364 1.45105 1.65423 1.03521 1.17870 1.22392 0.82033 0.86279 0.89014 1.93569 1.71974 1.65228 1.19345 1.44756 1.61002 1.09841 1.02663 1.45703 1.71845 1.07950 1.06244 1.18557 0.77069 0.88179 0.81008 1.91021 1.50339 1.12734 1.81195 1.18316 1.19946 0.92583 0.92655 1.20659 0.96165 0.91536 0.97237 1.20457 1.10678 0.98892 0.94613 1.20952 0.94476 0.93834 0.97128 1.21183 1.09887 0.94242 0.99639 1.19141 0.91413 0.85002 0.91511 1.84141 1.63803 1.13375 1.40241 1.21516 1.40274 0.92455 0.93785 0.88568 1.25449 0.96655 0.95277 0.98929 1.70096 1.40172 1.06634 1.28681 0.85741 0.79502 0.78443 0.79572 1.19200 1.19965 1.19191 0.91054 0.90568 0.92857 0.86526 0.91748 0.90071 0.92069 0.77213 0.69000 0.74676 0.87549 0.86922 0.86798 0.84710 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.43 37.16 0.35 -0.97 16 2 C 0.14 1.12 2.95 -67.93 -0.20 0.92 16 3 C -0.16 -0.86 9.38 37.16 0.35 -0.51 16 4 N -0.69 -6.43 5.04 -55.52 -0.28 -6.71 16 5 C 0.57 7.55 7.94 -86.93 -0.69 6.86 16 6 S -0.63 -10.45 28.14 -107.50 -3.02 -13.47 16 7 N -0.46 -6.68 6.26 29.96 0.19 -6.49 16 8 N -0.56 -7.93 6.21 30.46 0.19 -7.74 16 9 C 0.56 10.93 7.88 -12.47 -0.10 10.84 16 10 O -0.48 -12.02 15.00 -16.56 -0.25 -12.27 16 11 C -0.23 -4.35 5.89 -104.81 -0.62 -4.97 16 12 C -0.04 -0.53 9.54 -39.19 -0.37 -0.90 16 13 C -0.23 -3.14 10.03 -39.61 -0.40 -3.54 16 14 C -0.05 -0.69 10.03 -39.54 -0.40 -1.09 16 15 C -0.23 -4.42 9.16 -39.44 -0.36 -4.78 16 16 C 0.19 4.28 6.66 -38.60 -0.26 4.03 16 17 O -0.12 -3.25 7.84 -21.09 -0.17 -3.42 16 18 C -0.41 -10.73 9.49 30.90 0.29 -10.44 16 19 H 0.10 2.28 5.21 -52.49 -0.27 2.00 16 20 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 21 N -0.83 -23.77 13.67 55.48 0.76 -23.01 16 22 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.12 1.18 6.82 -51.93 -0.35 0.83 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.39 2.78 6.52 -40.82 -0.27 2.52 16 34 H 0.46 7.64 7.98 -182.59 -1.46 6.18 16 35 H 0.41 4.16 4.73 -182.60 -0.86 3.30 16 36 H 0.11 1.03 6.40 -52.49 -0.34 0.70 16 37 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 2.56 5.64 -52.49 -0.30 2.26 16 40 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -34.09 352.80 -11.11 -45.21 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.33 Total: 11.62 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.50 Total: -3.46 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.86 Total: -43.96 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.41 Total: -15.69 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -3.02 Total: -13.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.09 -11.11 -45.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251220333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.873 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds