Wall clock time and date at job start Tue Mar 31 2020 14:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46863 * 2 1 4 4 N 1.46501 * 109.46831 * 119.99572 * 2 1 3 5 5 C 1.34775 * 120.00221 * 85.00528 * 4 2 1 6 6 S 1.71201 * 119.99843 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00458 * 179.97438 * 5 4 2 8 8 N 1.40104 * 119.99742 * 359.97438 * 7 5 4 9 9 C 1.34782 * 119.99661 * 180.27013 * 8 7 5 10 10 O 1.21584 * 120.00060 * 359.73436 * 9 8 7 11 11 C 1.47532 * 119.99654 * 179.72137 * 9 8 7 12 12 C 1.39670 * 120.19847 * 0.02562 * 11 9 8 13 13 C 1.37834 * 119.92005 * 179.97438 * 12 11 9 14 14 C 1.38570 * 120.32158 * 0.02562 * 13 12 11 15 15 C 1.38025 * 120.40477 * 359.97438 * 14 13 12 16 16 C 1.38836 * 120.06952 * 359.74309 * 15 14 13 17 17 O 1.35524 * 120.16258 * 180.25362 * 16 15 14 18 18 C 1.34823 * 116.99900 * 354.40680 * 17 16 15 19 19 H 1.08001 * 119.99516 * 5.05240 * 18 17 16 20 20 C 1.38697 * 119.99982 * 185.06369 * 18 17 16 21 21 N 1.31521 * 119.99907 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99934 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47267 * 59.99753 * 22 20 18 24 24 H 1.48501 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47324 * 299.99402 * 22 20 18 26 26 H 1.09004 * 109.46711 * 60.00561 * 1 2 3 27 27 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47533 * 300.00102 * 1 2 3 29 29 H 1.08997 * 109.47492 * 239.99422 * 2 1 3 30 30 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46999 * 299.99262 * 3 2 1 32 32 H 1.08997 * 109.47538 * 59.99451 * 3 2 1 33 33 H 0.97000 * 120.00327 * 264.99995 * 4 2 1 34 34 H 0.97001 * 120.00382 * 179.97438 * 7 5 4 35 35 H 0.96991 * 119.99878 * 0.02562 * 8 7 5 36 36 H 1.07997 * 120.03780 * 359.95732 * 12 11 9 37 37 H 1.08000 * 119.83788 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.79693 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.96690 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99766 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1946 6 16 1.7395 -2.9294 -0.2053 7 7 2.5967 -2.6674 2.2948 8 7 2.9308 -1.9330 3.4403 9 6 3.3857 -2.5678 4.5388 10 8 3.5015 -3.7781 4.5373 11 6 3.7433 -1.7940 5.7429 12 6 3.6116 -0.4035 5.7491 13 6 3.9469 0.3138 6.8774 14 6 4.4152 -0.3378 8.0071 15 6 4.5505 -1.7114 8.0156 16 6 4.2121 -2.4507 6.8902 17 8 4.3393 -3.8000 6.8983 18 6 4.9089 -4.3546 7.9872 19 1 5.1652 -3.7377 8.8358 20 6 5.1658 -5.7172 8.0174 21 7 4.8534 -6.4684 6.9840 22 14 5.9555 -6.4854 9.5259 23 1 5.0878 -6.2576 10.7092 24 1 6.1220 -7.9450 9.3084 25 1 7.2842 -5.8647 9.7594 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 2.2490 -0.1822 1.9895 34 1 2.6891 -3.6330 2.2937 35 1 2.8381 -0.9675 3.4415 36 1 3.2478 0.1090 4.8709 37 1 3.8450 1.3889 6.8806 38 1 4.6758 0.2325 8.8863 39 1 4.9157 -2.2121 8.9001 40 1 5.0328 -7.4214 7.0054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251220333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:10 Heat of formation + Delta-G solvation = -1.041661 kcal Electronic energy + Delta-G solvation = -24524.074864 eV Core-core repulsion = 20852.721878 eV Total energy + Delta-G solvation = -3671.352987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82660 -40.72484 -39.54916 -38.13774 -37.34994 -34.39299 -34.18365 -32.51470 -31.16164 -30.63991 -28.13634 -27.43986 -25.63997 -24.29092 -23.41213 -23.03564 -21.93169 -20.57774 -19.93201 -19.55303 -18.62341 -17.73391 -17.25200 -16.78399 -16.48504 -16.39233 -16.14327 -15.94634 -15.79871 -15.39285 -15.34609 -14.88316 -14.64855 -14.33947 -13.92278 -13.58288 -13.15955 -13.07674 -13.02980 -12.78266 -12.60048 -12.54892 -12.48266 -12.42640 -12.18407 -12.01187 -11.62189 -11.59057 -11.01865 -10.85219 -10.04144 -9.83189 -9.13807 -9.00720 -8.92357 -8.48659 -6.19674 -0.09557 0.07927 0.19457 0.67997 1.00043 1.32452 1.44354 1.49786 1.57457 1.82057 2.13278 2.81713 3.03816 3.14803 3.37068 3.67684 3.86345 3.98936 4.09658 4.24112 4.32662 4.44135 4.52438 4.61428 4.75972 4.80239 4.86198 4.92930 4.95269 5.03086 5.07428 5.21923 5.36315 5.38509 5.41296 5.52181 5.66473 5.70362 5.89890 5.97926 6.10467 6.21020 6.90902 7.06754 7.72149 8.70769 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003207 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.358923 B = 8728.095548 C =10298.190809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.658 5.658 5 C 0.585 3.415 6 S -0.690 6.690 7 N -0.467 5.467 8 N -0.532 5.532 9 C 0.561 3.439 10 O -0.546 6.546 11 C -0.239 4.239 12 C -0.027 4.027 13 C -0.195 4.195 14 C -0.033 4.033 15 C -0.255 4.255 16 C 0.155 3.845 17 O -0.187 6.187 18 C -0.427 4.427 19 H 0.111 0.889 20 C -0.020 4.020 21 N -0.902 5.902 22 Si 1.019 2.981 23 H -0.253 1.253 24 H -0.276 1.276 25 H -0.253 1.253 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.408 0.592 34 H 0.450 0.550 35 H 0.434 0.566 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.125 0.875 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 23.490 -4.572 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.291 5.291 5 C 0.219 3.781 6 S -0.566 6.566 7 N -0.192 5.192 8 N -0.287 5.287 9 C 0.352 3.648 10 O -0.421 6.421 11 C -0.245 4.245 12 C -0.046 4.046 13 C -0.214 4.214 14 C -0.051 4.051 15 C -0.274 4.274 16 C 0.099 3.901 17 O -0.089 6.089 18 C -0.502 4.502 19 H 0.128 0.872 20 C -0.220 4.220 21 N -0.538 5.538 22 Si 0.838 3.162 23 H -0.177 1.177 24 H -0.201 1.201 25 H -0.177 1.177 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.248 0.752 34 H 0.298 0.702 35 H 0.280 0.720 36 H 0.182 0.818 37 H 0.187 0.813 38 H 0.173 0.827 39 H 0.143 0.857 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.400 21.843 -5.637 22.983 hybrid contribution 0.625 -0.711 1.565 1.829 sum -3.775 21.132 -4.072 21.849 Atomic orbital electron populations 1.22153 0.93725 1.02401 1.03679 1.21657 0.95451 0.93919 0.86077 1.22111 1.02049 0.92042 1.05096 1.45218 1.62948 1.01840 1.19062 1.21935 0.81423 0.87400 0.87296 1.93728 1.74320 1.67170 1.21391 1.44729 1.61871 1.09643 1.02982 1.45147 1.70061 1.08566 1.04971 1.18774 0.76390 0.87468 0.82169 1.91021 1.52994 1.15690 1.82401 1.18760 1.19478 0.94808 0.91481 1.21293 0.94371 0.89037 0.99852 1.21211 1.05844 1.01546 0.92749 1.21510 0.92155 0.92047 0.99390 1.21324 1.11250 0.96238 0.98568 1.20003 0.91731 0.84474 0.93847 1.84154 1.67713 1.15783 1.41215 1.22001 1.40648 0.93142 0.94452 0.87210 1.26726 0.97271 0.95722 1.02238 1.70288 1.44899 1.06592 1.31975 0.84650 0.78961 0.77065 0.75543 1.17713 1.20121 1.17736 0.89310 0.93775 0.91321 0.88679 0.91583 0.88627 0.90085 0.75186 0.70220 0.71985 0.81798 0.81314 0.82688 0.85721 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.43 71.98 0.68 -1.50 16 2 C 0.13 1.78 2.95 44.99 0.13 1.91 16 3 C -0.16 -0.92 9.38 71.98 0.68 -0.24 16 4 N -0.66 -10.39 5.04 -329.58 -1.66 -12.05 16 5 C 0.58 15.10 7.94 179.06 1.42 16.52 16 6 S -0.69 -23.70 28.14 -56.49 -1.59 -25.29 16 7 N -0.47 -13.58 6.26 -59.12 -0.37 -13.95 16 8 N -0.53 -14.02 6.21 -175.82 -1.09 -15.11 16 9 C 0.56 22.03 7.88 86.69 0.68 22.71 16 10 O -0.55 -29.16 15.00 16.92 0.25 -28.90 16 11 C -0.24 -8.78 5.89 -19.99 -0.12 -8.90 16 12 C -0.03 -0.61 9.54 22.52 0.21 -0.40 16 13 C -0.20 -3.92 10.03 22.25 0.22 -3.69 16 14 C -0.03 -0.84 10.03 22.30 0.22 -0.61 16 15 C -0.25 -9.55 9.16 22.36 0.20 -9.35 16 16 C 0.16 7.16 6.66 22.91 0.15 7.31 16 17 O -0.19 -11.04 7.84 0.71 0.01 -11.03 16 18 C -0.43 -24.33 9.49 67.93 0.64 -23.69 16 19 H 0.11 5.53 5.21 -2.91 -0.02 5.51 16 20 C -0.02 -1.11 5.49 84.85 0.47 -0.65 16 21 N -0.90 -57.05 13.67 21.62 0.30 -56.75 16 22 Si 1.02 42.39 29.55 68.60 2.03 44.42 16 23 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.91 7.48 -2.39 -0.02 0.89 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.80 6.82 -2.39 -0.02 1.79 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.41 3.77 6.52 -92.71 -0.60 3.17 16 34 H 0.45 15.77 7.98 -213.32 -1.70 14.07 16 35 H 0.43 6.77 4.73 -213.33 -1.01 5.76 16 36 H 0.16 1.78 6.40 -2.91 -0.02 1.76 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.13 4.82 5.64 -2.91 -0.02 4.80 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -89.31 352.80 1.28 -88.03 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -2.19 Total: 31.22 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.60 Total: -0.57 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.83 Total: -97.87 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: 0.26 Total: -39.94 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -23.70 SS G_CDS: -1.59 Total: -25.29 kcal Total: -89.31 1.28 -88.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251220333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.992 kcal (2) G-P(sol) polarization free energy of solvation -89.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds