Wall clock time and date at job start Tue Mar 31 2020 13:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46817 * 2 1 4 4 C 1.38161 * 119.98225 * 100.00464 * 3 2 1 5 5 C 1.38700 * 119.95827 * 180.02562 * 4 3 2 6 6 O 1.35928 * 120.04327 * 179.72304 * 5 4 3 7 7 C 1.42891 * 117.00210 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47237 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99834 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00104 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00177 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99911 * 224.28840 * 11 10 8 13 13 C 1.38949 * 120.00075 * 44.27904 * 11 10 8 14 14 N 1.31408 * 120.00042 * 18.21471 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 198.21047 * 13 11 10 16 16 H 1.48504 * 109.46997 * 60.00648 * 15 13 11 17 17 H 1.48503 * 109.46930 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47293 * 300.00488 * 15 13 11 19 19 C 1.46505 * 120.00104 * 359.97438 * 10 8 7 20 20 C 1.53000 * 117.49954 * 183.22696 * 19 10 8 21 21 C 1.52997 * 117.49628 * 114.60308 * 19 10 8 22 22 C 1.38739 * 119.91931 * 359.97438 * 5 4 3 23 23 C 1.38127 * 119.95108 * 0.02562 * 22 5 4 24 24 C 1.38346 * 119.97879 * 280.01912 * 3 2 1 25 25 Cl 1.73604 * 119.95445 * 359.97438 * 24 3 2 26 26 H 1.09006 * 109.46858 * 300.00133 * 1 2 3 27 27 H 1.08993 * 109.47096 * 60.00471 * 1 2 3 28 28 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47296 * 239.99920 * 2 1 3 30 30 H 1.08999 * 109.47479 * 119.99763 * 2 1 3 31 31 H 1.07998 * 120.01839 * 359.97438 * 4 3 2 32 32 H 1.08996 * 109.47136 * 299.99760 * 7 6 5 33 33 H 1.09004 * 109.47575 * 59.99867 * 7 6 5 34 34 H 0.96997 * 120.00087 * 174.92353 * 14 13 11 35 35 H 1.08997 * 115.54931 * 328.93854 * 19 10 8 36 36 H 1.08997 * 117.49717 * 0.02562 * 20 19 10 37 37 H 1.09000 * 117.49218 * 145.02250 * 20 19 10 38 38 H 1.09001 * 117.49997 * 214.97701 * 21 19 10 39 39 H 1.08997 * 117.50341 * 359.97438 * 21 19 10 40 40 H 1.07994 * 120.03057 * 179.97438 * 22 5 4 41 41 H 1.08006 * 119.97391 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4584 2.0025 1.1785 5 6 2.9201 3.3104 1.1780 6 8 3.3345 3.8862 2.3375 7 6 3.7979 5.2358 2.2622 8 6 4.2115 5.7022 3.6342 9 8 4.1182 4.9527 4.5833 10 7 4.6842 6.9525 3.8069 11 6 5.0610 7.3767 5.0549 12 1 4.7673 8.3557 5.4041 13 6 5.8206 6.5471 5.8707 14 7 6.4757 5.5341 5.3497 15 14 5.9105 6.8719 7.7081 16 1 4.5468 6.7974 8.2912 17 1 6.7797 5.8525 8.3489 18 1 6.4769 8.2241 7.9446 19 6 4.7964 7.8581 2.6607 20 6 5.4103 9.2376 2.9076 21 6 3.9074 9.1032 2.6545 22 6 2.9536 4.0320 -0.0064 23 6 2.5267 3.4470 -1.1826 24 6 2.0661 2.1421 -1.1801 25 17 1.5304 1.4089 -2.6597 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4313 1.4394 2.0997 32 1 4.6518 5.2896 1.5870 33 1 2.9978 5.8744 1.8877 34 1 7.0640 4.9995 5.9056 35 1 5.0002 7.3804 1.7024 36 1 5.7311 9.4712 3.9228 37 1 6.0183 9.6676 2.1116 38 1 3.5267 9.4450 1.6920 39 1 3.2387 9.2485 3.5029 40 1 3.3123 5.0506 -0.0088 41 1 2.5522 4.0085 -2.1049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318065521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:46 Heat of formation + Delta-G solvation = -18.955922 kcal Electronic energy + Delta-G solvation = -24630.549275 eV Core-core repulsion = 20924.083010 eV Total energy + Delta-G solvation = -3706.466265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22161 -38.75796 -37.69386 -36.29349 -35.91718 -33.97749 -32.87383 -31.17773 -30.49708 -29.08987 -27.88040 -24.80511 -23.90910 -22.65487 -21.83264 -21.39978 -20.92751 -19.38570 -17.84177 -16.79686 -16.42580 -16.17865 -15.90456 -15.66833 -14.88062 -14.58801 -14.51998 -14.00004 -13.76963 -13.73803 -13.52759 -13.19747 -12.92960 -12.71873 -12.52335 -12.19733 -11.89904 -11.70086 -11.57323 -11.26229 -11.12054 -11.04169 -10.97049 -10.89837 -10.74628 -10.57683 -10.38926 -10.23106 -10.07205 -9.85691 -8.95580 -8.78023 -8.12875 -8.02615 -7.14558 -6.18361 -3.95875 1.17224 1.25811 2.14087 3.21448 3.30918 3.35402 3.38826 3.58250 3.94682 4.23342 4.55114 4.64134 4.66239 4.81124 4.93817 5.08842 5.15427 5.21783 5.22439 5.35578 5.40175 5.46681 5.53939 5.58883 5.63910 5.69526 5.76082 5.78857 5.88084 5.96711 6.04849 6.11459 6.13553 6.27344 6.32961 6.34294 6.57190 6.63172 6.84662 7.51078 7.58330 8.18590 8.93541 9.04890 9.53494 10.14096 10.90593 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.002978 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.026588 B = 9400.049823 C =10491.523700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.033 4.033 4 C -0.143 4.143 5 C 0.152 3.848 6 O -0.279 6.279 7 C 0.047 3.953 8 C 0.483 3.517 9 O -0.510 6.510 10 N -0.422 5.422 11 C -0.351 4.351 12 H 0.081 0.919 13 C 0.073 3.927 14 N -0.831 5.831 15 Si 0.916 3.084 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.067 3.933 20 C -0.169 4.169 21 C -0.206 4.206 22 C -0.208 4.208 23 C -0.065 4.065 24 C -0.082 4.082 25 Cl -0.079 7.079 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -4.169 -14.575 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.034 4.034 4 C -0.162 4.162 5 C 0.105 3.895 6 O -0.190 6.190 7 C -0.032 4.032 8 C 0.268 3.732 9 O -0.385 6.385 10 N -0.145 5.145 11 C -0.477 4.477 12 H 0.098 0.902 13 C -0.138 4.138 14 N -0.464 5.464 15 Si 0.743 3.257 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.039 4.039 20 C -0.207 4.207 21 C -0.245 4.245 22 C -0.227 4.227 23 C -0.084 4.084 24 C -0.109 4.109 25 Cl -0.051 7.051 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.786 -4.945 -13.923 16.701 hybrid contribution 0.301 0.430 0.364 0.639 sum -7.485 -4.515 -13.559 16.133 Atomic orbital electron populations 1.21736 0.94264 1.01883 1.02553 1.20591 0.96651 0.91693 1.03485 1.19474 0.96893 0.96332 0.90734 1.20271 1.04189 0.93310 0.98442 1.19257 0.92097 0.92536 0.85631 1.86260 1.76520 1.28296 1.27891 1.22797 0.99041 0.80837 1.00543 1.19247 0.82012 0.84071 0.87825 1.90577 1.53739 1.52595 1.41638 1.42596 1.56546 1.09741 1.05595 1.18808 1.35250 1.03551 0.90098 0.90179 1.25286 0.93602 0.95200 0.99729 1.69804 1.22816 1.17033 1.36706 0.86220 0.78329 0.77503 0.83659 1.19819 1.21084 1.20287 1.21758 1.03618 0.86667 0.91889 1.23063 0.94675 0.99441 1.03520 1.23339 0.94252 1.04766 1.02189 1.21258 1.07875 1.01599 0.92013 1.20757 0.96434 0.92810 0.98349 1.20525 1.08547 0.94722 0.87070 1.98325 1.89125 1.83132 1.34488 0.92364 0.92207 0.92245 0.90291 0.90439 0.84211 0.90693 0.90569 0.92299 0.88175 0.87306 0.89658 0.89662 0.88923 0.84486 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.84 37.16 0.37 -0.98 16 2 C -0.09 -0.87 5.52 -27.88 -0.15 -1.03 16 3 C -0.03 -0.42 5.14 -104.61 -0.54 -0.96 16 4 C -0.14 -2.08 9.61 -39.44 -0.38 -2.46 16 5 C 0.15 2.46 6.69 -39.23 -0.26 2.20 16 6 O -0.28 -5.60 9.67 -39.42 -0.38 -5.99 16 7 C 0.05 0.90 3.84 36.01 0.14 1.04 16 8 C 0.48 12.19 7.04 -10.98 -0.08 12.11 16 9 O -0.51 -15.30 14.26 -14.36 -0.20 -15.51 16 10 N -0.42 -10.26 2.83 -107.73 -0.31 -10.57 16 11 C -0.35 -9.34 7.92 -14.94 -0.12 -9.46 16 12 H 0.08 2.04 7.26 -52.48 -0.38 1.66 16 13 C 0.07 2.03 4.39 -17.47 -0.08 1.95 16 14 N -0.83 -24.42 11.74 55.50 0.65 -23.77 16 15 Si 0.92 21.65 29.59 -169.99 -5.03 16.62 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.07 1.26 5.87 -67.93 -0.40 0.86 16 20 C -0.17 -2.87 9.80 -26.73 -0.26 -3.13 16 21 C -0.21 -3.28 10.36 -26.73 -0.28 -3.56 16 22 C -0.21 -2.82 9.04 -39.44 -0.36 -3.18 16 23 C -0.06 -0.78 9.82 -39.57 -0.39 -1.17 16 24 C -0.08 -1.00 6.31 -39.49 -0.25 -1.25 16 25 Cl -0.08 -0.84 26.61 -51.86 -1.38 -2.22 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.56 7.25 -51.93 -0.38 0.19 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.75 7.35 -51.93 -0.38 0.37 16 30 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 31 H 0.14 1.96 8.04 -52.49 -0.42 1.54 16 32 H 0.08 1.30 7.09 -51.93 -0.37 0.93 16 33 H 0.08 1.24 7.62 -51.93 -0.40 0.84 16 34 H 0.27 7.54 8.32 -40.82 -0.34 7.20 16 35 H 0.10 1.63 6.96 -51.93 -0.36 1.27 16 36 H 0.11 2.07 6.72 -51.93 -0.35 1.72 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.14 1.64 6.30 -52.49 -0.33 1.31 16 41 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -32.60 356.88 -9.76 -42.36 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.45 Total: 2.70 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -3.03 Total: -9.00 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.35 Total: -34.33 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.59 Total: -21.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.38 Total: -2.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.60 -9.76 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318065521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.400 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds