Wall clock time and date at job start Tue Mar 31 2020 13:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.46817 * 2 1 4 4 C 1.38161 * 119.98225 * 100.00464 * 3 2 1 5 5 C 1.38700 * 119.95827 * 180.02562 * 4 3 2 6 6 O 1.35928 * 120.04327 * 179.72304 * 5 4 3 7 7 C 1.42891 * 117.00210 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47237 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99834 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00104 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00177 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99911 * 224.28840 * 11 10 8 13 13 C 1.38949 * 120.00075 * 44.27904 * 11 10 8 14 14 N 1.31408 * 120.00042 * 18.21471 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 198.21047 * 13 11 10 16 16 H 1.48504 * 109.46997 * 60.00648 * 15 13 11 17 17 H 1.48503 * 109.46930 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47293 * 300.00488 * 15 13 11 19 19 C 1.46505 * 120.00104 * 359.97438 * 10 8 7 20 20 C 1.53000 * 117.49954 * 183.22696 * 19 10 8 21 21 C 1.52997 * 117.49628 * 114.60308 * 19 10 8 22 22 C 1.38739 * 119.91931 * 359.97438 * 5 4 3 23 23 C 1.38127 * 119.95108 * 0.02562 * 22 5 4 24 24 C 1.38346 * 119.97879 * 280.01912 * 3 2 1 25 25 Cl 1.73604 * 119.95445 * 359.97438 * 24 3 2 26 26 H 1.09006 * 109.46858 * 300.00133 * 1 2 3 27 27 H 1.08993 * 109.47096 * 60.00471 * 1 2 3 28 28 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47296 * 239.99920 * 2 1 3 30 30 H 1.08999 * 109.47479 * 119.99763 * 2 1 3 31 31 H 1.07998 * 120.01839 * 359.97438 * 4 3 2 32 32 H 1.08996 * 109.47136 * 299.99760 * 7 6 5 33 33 H 1.09004 * 109.47575 * 59.99867 * 7 6 5 34 34 H 0.96997 * 120.00087 * 174.92353 * 14 13 11 35 35 H 1.08997 * 115.54931 * 328.93854 * 19 10 8 36 36 H 1.08997 * 117.49717 * 0.02562 * 20 19 10 37 37 H 1.09000 * 117.49218 * 145.02250 * 20 19 10 38 38 H 1.09001 * 117.49997 * 214.97701 * 21 19 10 39 39 H 1.08997 * 117.50341 * 359.97438 * 21 19 10 40 40 H 1.07994 * 120.03057 * 179.97438 * 22 5 4 41 41 H 1.08006 * 119.97391 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4584 2.0025 1.1785 5 6 2.9201 3.3104 1.1780 6 8 3.3345 3.8862 2.3375 7 6 3.7979 5.2358 2.2622 8 6 4.2115 5.7022 3.6342 9 8 4.1182 4.9527 4.5833 10 7 4.6842 6.9525 3.8069 11 6 5.0610 7.3767 5.0549 12 1 4.7673 8.3557 5.4041 13 6 5.8206 6.5471 5.8707 14 7 6.4757 5.5341 5.3497 15 14 5.9105 6.8719 7.7081 16 1 4.5468 6.7974 8.2912 17 1 6.7797 5.8525 8.3489 18 1 6.4769 8.2241 7.9446 19 6 4.7964 7.8581 2.6607 20 6 5.4103 9.2376 2.9076 21 6 3.9074 9.1032 2.6545 22 6 2.9536 4.0320 -0.0064 23 6 2.5267 3.4470 -1.1826 24 6 2.0661 2.1421 -1.1801 25 17 1.5304 1.4089 -2.6597 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4313 1.4394 2.0997 32 1 4.6518 5.2896 1.5870 33 1 2.9978 5.8744 1.8877 34 1 7.0640 4.9995 5.9056 35 1 5.0002 7.3804 1.7024 36 1 5.7311 9.4712 3.9228 37 1 6.0183 9.6676 2.1116 38 1 3.5267 9.4450 1.6920 39 1 3.2387 9.2485 3.5029 40 1 3.3123 5.0506 -0.0088 41 1 2.5522 4.0085 -2.1049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318065521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:45 Heat of formation + Delta-G solvation = -36.391879 kcal Electronic energy + Delta-G solvation = -24631.305355 eV Core-core repulsion = 20924.083010 eV Total energy + Delta-G solvation = -3707.222345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43861 -40.34817 -38.95647 -37.69642 -37.12116 -34.92086 -34.76144 -33.01399 -31.65522 -30.08943 -29.41212 -26.59359 -24.90745 -23.68855 -23.20677 -22.87156 -22.14034 -21.03461 -19.11572 -18.33186 -17.92550 -17.47763 -17.28377 -17.00775 -16.60167 -16.00586 -15.69964 -15.45395 -15.07212 -15.00549 -14.63984 -14.44136 -14.29897 -14.06679 -13.60425 -13.48310 -13.11324 -13.03685 -12.88797 -12.79880 -12.59903 -12.49542 -12.26299 -12.21293 -12.12910 -11.84899 -11.69388 -11.56314 -11.49686 -11.23941 -10.75145 -10.04014 -9.94967 -9.13186 -9.04524 -8.24491 -6.03930 0.15926 0.21191 1.19121 1.34788 1.44642 1.47766 1.88930 2.16467 2.38155 2.54903 3.09864 3.14311 3.31218 3.66000 3.68240 3.85566 3.97968 4.08292 4.14686 4.18047 4.22706 4.27538 4.30127 4.43006 4.46601 4.47914 4.70259 4.87178 4.92119 4.96235 5.02801 5.03624 5.10847 5.23721 5.27984 5.35589 5.36525 5.44981 5.50431 5.57530 6.13634 6.34489 6.96202 7.13789 7.59511 8.24449 8.84037 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.002978 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.026588 B = 9400.049823 C =10491.523700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.033 4.033 4 C -0.159 4.159 5 C 0.121 3.879 6 O -0.318 6.318 7 C 0.064 3.936 8 C 0.463 3.537 9 O -0.576 6.576 10 N -0.435 5.435 11 C -0.357 4.357 12 H 0.084 0.916 13 C 0.020 3.980 14 N -0.871 5.871 15 Si 0.971 3.029 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.252 1.252 19 C 0.035 3.965 20 C -0.168 4.168 21 C -0.177 4.177 22 C -0.205 4.205 23 C -0.060 4.060 24 C -0.084 4.084 25 Cl -0.061 7.061 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.260 0.740 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -3.016 -17.542 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.034 4.034 4 C -0.177 4.177 5 C 0.075 3.925 6 O -0.231 6.231 7 C -0.014 4.014 8 C 0.251 3.749 9 O -0.457 6.457 10 N -0.157 5.157 11 C -0.484 4.484 12 H 0.102 0.898 13 C -0.186 4.186 14 N -0.506 5.506 15 Si 0.796 3.204 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.176 1.176 19 C -0.070 4.070 20 C -0.205 4.205 21 C -0.216 4.216 22 C -0.224 4.224 23 C -0.079 4.079 24 C -0.110 4.110 25 Cl -0.032 7.032 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.173 0.827 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.656 -3.733 -16.935 19.382 hybrid contribution 0.471 0.072 1.141 1.236 sum -8.185 -3.661 -15.794 18.162 Atomic orbital electron populations 1.21718 0.93397 1.02957 1.02046 1.20673 0.97315 0.90331 1.04170 1.19694 0.96122 0.97402 0.90172 1.20378 1.05024 0.93220 0.99122 1.19527 0.94104 0.93365 0.85500 1.86190 1.77745 1.28672 1.30458 1.22532 1.00774 0.81435 0.96667 1.20282 0.81044 0.83918 0.89691 1.90521 1.56406 1.54474 1.44283 1.42843 1.55733 1.10522 1.06624 1.19096 1.34126 1.03375 0.91847 0.89842 1.26116 0.93701 0.95191 1.03628 1.69921 1.24360 1.18589 1.37713 0.85356 0.77652 0.78405 0.78985 1.20765 1.21409 1.17637 1.22143 1.06891 0.86871 0.91066 1.23126 0.96236 0.97926 1.03258 1.23360 0.93227 1.01345 1.03640 1.21442 1.07395 1.02221 0.91337 1.21081 0.95127 0.92792 0.98870 1.20727 1.07672 0.94999 0.87636 1.98334 1.88849 1.82880 1.33135 0.93189 0.92346 0.90433 0.89341 0.90034 0.85069 0.88723 0.87324 0.93056 0.85179 0.90060 0.86217 0.85292 0.90703 0.82684 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.84 71.98 0.71 -1.70 16 2 C -0.09 -1.65 5.52 29.85 0.16 -1.49 16 3 C -0.03 -0.79 5.14 -19.86 -0.10 -0.89 16 4 C -0.16 -4.68 9.61 22.36 0.21 -4.46 16 5 C 0.12 3.91 6.69 22.50 0.15 4.06 16 6 O -0.32 -13.13 9.67 -73.71 -0.71 -13.85 16 7 C 0.06 2.44 3.84 71.24 0.27 2.71 16 8 C 0.46 23.97 7.04 87.66 0.62 24.58 16 9 O -0.58 -36.41 14.26 15.97 0.23 -36.19 16 10 N -0.44 -21.36 2.83 -613.12 -1.74 -23.09 16 11 C -0.36 -19.45 7.92 84.04 0.67 -18.79 16 12 H 0.08 4.34 7.26 -2.91 -0.02 4.32 16 13 C 0.02 1.15 4.39 84.93 0.37 1.53 16 14 N -0.87 -53.45 11.74 21.66 0.25 -53.19 16 15 Si 0.97 45.79 29.59 68.60 2.03 47.82 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 19 C 0.03 1.24 5.87 44.99 0.26 1.50 16 20 C -0.17 -5.29 9.80 30.60 0.30 -4.99 16 21 C -0.18 -5.06 10.36 30.59 0.32 -4.74 16 22 C -0.21 -5.13 9.04 22.36 0.20 -4.92 16 23 C -0.06 -1.27 9.82 22.28 0.22 -1.05 16 24 C -0.08 -1.85 6.31 22.33 0.14 -1.71 16 25 Cl -0.06 -1.13 26.61 -2.72 -0.07 -1.20 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.06 0.98 7.25 -2.39 -0.02 0.97 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.50 7.35 -2.39 -0.02 1.48 16 30 H 0.08 1.46 8.00 -2.39 -0.02 1.44 16 31 H 0.13 3.94 8.04 -2.91 -0.02 3.91 16 32 H 0.09 3.15 7.09 -2.39 -0.02 3.13 16 33 H 0.11 3.32 7.62 -2.39 -0.02 3.30 16 34 H 0.26 15.48 8.32 -92.71 -0.77 14.71 16 35 H 0.13 3.80 6.96 -2.39 -0.02 3.78 16 36 H 0.08 3.03 6.72 -2.39 -0.02 3.01 16 37 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.16 3.20 6.30 -2.91 -0.02 3.18 16 41 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -75.86 356.88 5.54 -70.32 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.04 Total: 19.74 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.51 Total: -10.36 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.48 Total: -76.29 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.48 Total: -50.03 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -75.86 5.54 -70.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318065521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.928 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds