Wall clock time and date at job start Tue Mar 31 2020 13:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46907 * 110.99769 * 66.04707 * 6 5 4 8 8 C 1.50704 * 109.46871 * 189.99903 * 7 6 5 9 9 H 1.08000 * 120.00287 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99800 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99894 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99995 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47060 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47014 * 120.00574 * 12 10 8 15 15 H 1.48499 * 109.47269 * 240.00285 * 12 10 8 16 16 C 1.40721 * 111.00120 * 189.99681 * 6 5 4 17 17 C 1.37795 * 122.46695 * 299.71638 * 16 6 5 18 18 C 1.36542 * 114.40113 * 179.81399 * 17 16 6 19 19 C 1.43204 * 125.29612 * 180.18609 * 18 17 16 20 20 N 8.40927 * 70.70094 * 168.09210 * 2 1 3 21 21 S 1.75869 * 109.40763 * 0.42277 * 18 17 16 22 22 C 1.34322 * 122.46176 * 119.99748 * 16 6 5 23 23 N 1.48066 * 125.01071 * 359.97438 * 22 16 6 24 24 O 1.21798 * 119.99622 * 359.97438 * 23 22 16 25 25 O 1.21798 * 119.99464 * 179.97438 * 23 22 16 26 26 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 27 27 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 28 28 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.08996 * 109.46996 * 309.99440 * 7 6 5 38 38 H 1.09001 * 109.47288 * 70.00022 * 7 6 5 39 39 H 0.97004 * 119.99381 * 179.97438 * 11 10 8 40 40 H 1.07995 * 122.79567 * 359.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1256 -2.8881 2.3870 7 6 1.4525 -2.3908 3.5944 8 6 2.1440 -2.9379 4.8165 9 1 2.9984 -3.5895 4.7072 10 6 1.6867 -2.6058 6.0740 11 7 0.6466 -1.8119 6.2070 12 14 2.5434 -3.2845 7.5889 13 1 3.6778 -4.1470 7.1712 14 1 3.0543 -2.1605 8.4139 15 1 1.5795 -4.0851 8.3857 16 6 1.9731 -4.2814 2.2624 17 6 0.7436 -4.8782 2.0860 18 6 0.7869 -6.2388 1.9806 19 6 -0.3484 -7.0905 1.7896 20 7 -1.2492 -7.7659 1.6377 21 16 2.4532 -6.7832 2.1225 22 6 3.0147 -5.1280 2.3121 23 7 4.4276 -4.7265 2.4988 24 8 4.7150 -3.5492 2.6207 25 8 5.3023 -5.5735 2.5305 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.4935 -1.3017 3.6107 38 1 0.4118 -2.7152 3.5899 39 1 0.3247 -1.5785 7.0918 40 1 -0.1771 -4.3162 2.0330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334956908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:49 Heat of formation + Delta-G solvation = 62.541318 kcal Electronic energy + Delta-G solvation = -25404.565668 eV Core-core repulsion = 21735.969846 eV Total energy + Delta-G solvation = -3668.595822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51847 -39.58542 -37.24022 -36.52203 -35.90766 -34.59208 -32.65914 -30.88283 -28.94365 -27.34949 -27.06250 -25.89246 -23.80043 -23.08492 -22.24203 -20.07432 -19.70795 -19.35319 -18.24779 -17.12745 -16.99438 -16.75288 -16.19336 -15.24582 -15.13994 -15.02243 -14.41289 -14.12652 -13.92106 -13.58789 -13.44561 -13.27361 -12.92365 -12.79792 -12.33726 -12.29224 -12.10136 -11.87420 -11.55953 -11.35290 -11.13555 -11.05078 -10.85815 -10.76213 -10.71554 -10.59661 -10.54770 -10.49960 -10.25252 -10.00576 -9.45729 -9.29075 -8.69282 -8.60329 -7.89593 -6.20886 -4.22122 -0.40582 0.43526 1.17978 1.26285 1.97788 2.24940 2.53946 2.97366 3.22518 3.31365 3.36874 3.48023 4.17684 4.38672 4.77685 5.01707 5.03622 5.09056 5.16008 5.17363 5.37019 5.42914 5.66892 5.70986 5.79095 5.84265 5.87739 5.95097 6.03661 6.18622 6.25255 6.34829 6.57389 6.66888 6.73778 6.88565 6.91218 7.06346 7.48215 7.71475 7.84430 8.17292 8.17787 8.82440 9.42865 10.89205 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.007328 B = 0.006169 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.247115 B = 4537.997186 C = 5894.563989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.061 3.939 6 N -0.487 5.487 7 C 0.196 3.804 8 C -0.510 4.510 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.284 1.284 16 C 0.212 3.788 17 C -0.092 4.092 18 C -0.109 4.109 19 C 0.283 3.717 20 N -0.386 5.386 21 S 0.294 5.706 22 C -0.153 4.153 23 N 0.064 4.936 24 O -0.066 6.066 25 O -0.211 6.211 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -1.905 -12.361 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.148 4.148 5 C -0.066 4.066 6 N -0.209 5.209 7 C 0.074 3.926 8 C -0.549 4.549 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.210 1.210 16 C 0.102 3.898 17 C -0.132 4.132 18 C -0.232 4.232 19 C -0.034 4.034 20 N -0.063 5.063 21 S 0.560 5.440 22 C -0.357 4.357 23 N 0.588 4.412 24 O -0.303 6.303 25 O -0.409 6.409 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.476 -4.562 -12.520 13.333 hybrid contribution -0.530 1.286 1.206 1.841 sum -1.006 -3.275 -11.314 11.821 Atomic orbital electron populations 1.21909 0.95628 1.01663 1.01481 1.21085 0.95596 0.96219 0.98456 1.21813 1.01048 0.95983 1.01413 1.21650 1.02319 0.93152 0.97671 1.22194 0.97425 0.95324 0.91662 1.60462 1.59354 0.96040 1.05091 1.20029 0.91640 0.97248 0.83709 1.21059 1.14219 1.29815 0.89792 0.92234 1.24886 0.94952 0.95035 0.99043 1.69932 1.24250 1.35265 1.23613 0.86519 0.79652 0.79105 0.82795 1.19599 1.20561 1.20994 1.17651 0.88535 0.93773 0.89863 1.21170 1.00531 0.91913 0.99586 1.20289 0.94497 0.94940 1.13470 1.24039 0.92177 0.93162 0.94034 1.81311 1.08882 1.07856 1.08287 1.84372 0.92935 0.98919 1.67771 1.26140 0.87245 0.99023 1.23272 1.42184 1.00065 1.00954 0.98037 1.94664 1.86221 1.00894 1.48517 1.94519 1.40948 1.47395 1.58078 0.92432 0.93314 0.92710 0.91686 0.92612 0.93244 0.92537 0.90641 0.90552 0.91931 0.94536 0.92767 0.98152 0.92709 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.95 37.16 0.33 -1.30 16 2 C -0.09 -1.07 2.92 -90.62 -0.26 -1.34 16 3 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 4 C -0.11 -1.56 4.63 -26.74 -0.12 -1.68 16 5 C 0.06 0.89 4.36 -3.83 -0.02 0.87 16 6 N -0.49 -8.96 3.16 -173.86 -0.55 -9.51 16 7 C 0.20 4.38 4.50 -4.97 -0.02 4.36 16 8 C -0.51 -13.16 8.73 -34.44 -0.30 -13.46 16 9 H 0.06 1.59 7.38 -52.49 -0.39 1.20 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 12 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.21 3.60 3.77 -85.32 -0.32 3.28 16 17 C -0.09 -1.32 8.84 -40.36 -0.36 -1.68 16 18 C -0.11 -1.41 6.31 -38.27 -0.24 -1.65 16 19 C 0.28 3.68 15.82 -22.47 -0.36 3.32 16 20 N -0.39 -5.54 18.54 41.84 0.78 -4.76 16 21 S 0.29 3.79 23.07 -107.50 -2.48 1.31 16 22 C -0.15 -2.60 7.32 -10.99 -0.08 -2.68 16 23 N 0.06 1.23 4.46 33.59 0.15 1.38 16 24 O -0.07 -1.37 17.77 -29.46 -0.52 -1.89 16 25 O -0.21 -3.99 19.07 -29.46 -0.56 -4.55 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.22 6.37 -51.93 -0.33 0.89 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 36 H 0.04 0.50 6.25 -51.93 -0.32 0.18 16 37 H 0.05 1.29 6.08 -51.93 -0.32 0.97 16 38 H 0.00 0.02 7.44 -51.93 -0.39 -0.37 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.17 2.18 7.72 -52.49 -0.41 1.78 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -28.24 362.18 -8.53 -36.77 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -5.00 Total: -4.93 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.51 Total: -11.56 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.11 Total: -36.67 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -1.09 Total: -6.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.48 Total: 1.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.24 -8.53 -36.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334956908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.311 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds