Wall clock time and date at job start Tue Mar 31 2020 13:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46907 * 110.99769 * 66.04707 * 6 5 4 8 8 C 1.50704 * 109.46871 * 189.99903 * 7 6 5 9 9 H 1.08000 * 120.00287 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99800 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99894 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99995 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47060 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47014 * 120.00574 * 12 10 8 15 15 H 1.48499 * 109.47269 * 240.00285 * 12 10 8 16 16 C 1.40721 * 111.00120 * 189.99681 * 6 5 4 17 17 C 1.37795 * 122.46695 * 299.71638 * 16 6 5 18 18 C 1.36542 * 114.40113 * 179.81399 * 17 16 6 19 19 C 1.43204 * 125.29612 * 180.18609 * 18 17 16 20 20 N 8.40927 * 70.70094 * 168.09210 * 2 1 3 21 21 S 1.75869 * 109.40763 * 0.42277 * 18 17 16 22 22 C 1.34322 * 122.46176 * 119.99748 * 16 6 5 23 23 N 1.48066 * 125.01071 * 359.97438 * 22 16 6 24 24 O 1.21798 * 119.99622 * 359.97438 * 23 22 16 25 25 O 1.21798 * 119.99464 * 179.97438 * 23 22 16 26 26 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 27 27 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 28 28 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 30 30 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 32 32 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 33 33 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 34 34 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.08996 * 109.46996 * 309.99440 * 7 6 5 38 38 H 1.09001 * 109.47288 * 70.00022 * 7 6 5 39 39 H 0.97004 * 119.99381 * 179.97438 * 11 10 8 40 40 H 1.07995 * 122.79567 * 359.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1256 -2.8881 2.3870 7 6 1.4525 -2.3908 3.5944 8 6 2.1440 -2.9379 4.8165 9 1 2.9984 -3.5895 4.7072 10 6 1.6867 -2.6058 6.0740 11 7 0.6466 -1.8119 6.2070 12 14 2.5434 -3.2845 7.5889 13 1 3.6778 -4.1470 7.1712 14 1 3.0543 -2.1605 8.4139 15 1 1.5795 -4.0851 8.3857 16 6 1.9731 -4.2814 2.2624 17 6 0.7436 -4.8782 2.0860 18 6 0.7869 -6.2388 1.9806 19 6 -0.3484 -7.0905 1.7896 20 7 -1.2492 -7.7659 1.6377 21 16 2.4532 -6.7832 2.1225 22 6 3.0147 -5.1280 2.3121 23 7 4.4276 -4.7265 2.4988 24 8 4.7150 -3.5492 2.6207 25 8 5.3023 -5.5735 2.5305 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6442 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 1.4935 -1.3017 3.6107 38 1 0.4118 -2.7152 3.5899 39 1 0.3247 -1.5785 7.0918 40 1 -0.1771 -4.3162 2.0330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334956908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:48 Heat of formation + Delta-G solvation = 49.624066 kcal Electronic energy + Delta-G solvation = -25405.125802 eV Core-core repulsion = 21735.969846 eV Total energy + Delta-G solvation = -3669.155956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.96247 -40.89940 -38.38406 -37.61453 -37.36837 -35.94700 -34.52019 -32.14154 -30.33641 -28.93129 -27.94460 -27.29707 -25.07991 -24.80355 -23.47359 -21.39751 -20.78774 -20.65058 -19.64610 -18.72869 -18.43284 -18.18531 -17.56996 -16.84147 -16.49742 -16.11883 -15.88461 -15.38519 -15.05967 -14.76393 -14.53247 -14.43412 -14.23601 -14.03299 -13.85165 -13.60267 -13.43847 -13.02057 -12.86778 -12.72410 -12.61278 -12.51441 -12.44852 -12.26496 -12.18166 -12.07040 -11.86691 -11.59850 -11.48022 -11.33685 -11.26418 -10.61543 -10.51399 -9.80987 -9.35161 -8.23523 -6.29215 -1.68111 -0.74749 -0.11361 -0.00489 0.64342 0.94017 1.33461 1.38262 1.43550 1.47519 1.87993 2.33604 2.36705 2.93757 3.11824 3.54918 3.85909 3.97797 4.07285 4.18459 4.23421 4.33046 4.58086 4.64871 4.69686 4.86395 4.88315 4.98140 5.08490 5.12262 5.16696 5.24201 5.27939 5.30559 5.40572 5.55167 5.61756 5.62337 5.98005 5.98371 6.18220 6.42217 6.65176 6.82425 7.38833 8.86513 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.007328 B = 0.006169 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.247115 B = 4537.997186 C = 5894.563989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.105 4.105 5 C 0.062 3.938 6 N -0.499 5.499 7 C 0.216 3.784 8 C -0.515 4.515 9 H 0.047 0.953 10 C 0.020 3.980 11 N -0.920 5.920 12 Si 0.941 3.059 13 H -0.277 1.277 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.201 3.799 17 C -0.103 4.103 18 C -0.088 4.088 19 C 0.300 3.700 20 N -0.399 5.399 21 S 0.375 5.625 22 C -0.183 4.183 23 N 0.066 4.934 24 O -0.123 6.123 25 O -0.196 6.196 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.033 0.967 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.145 -3.618 -13.605 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.143 4.143 5 C -0.064 4.064 6 N -0.222 5.222 7 C 0.092 3.908 8 C -0.554 4.554 9 H 0.065 0.935 10 C -0.180 4.180 11 N -0.560 5.560 12 Si 0.767 3.233 13 H -0.202 1.202 14 H -0.203 1.203 15 H -0.201 1.201 16 C 0.089 3.911 17 C -0.142 4.142 18 C -0.211 4.211 19 C -0.017 4.017 20 N -0.077 5.077 21 S 0.643 5.357 22 C -0.387 4.387 23 N 0.584 4.416 24 O -0.347 6.347 25 O -0.401 6.401 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.008 0.992 39 H 0.073 0.927 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.977 -6.186 -13.771 15.128 hybrid contribution -0.359 1.624 1.509 2.246 sum -1.336 -4.562 -12.261 13.151 Atomic orbital electron populations 1.21892 0.95030 1.01844 1.01726 1.21052 0.96017 0.96420 0.97240 1.21809 1.01030 0.95527 1.01823 1.21583 1.01220 0.93290 0.98184 1.22297 0.98222 0.95176 0.90721 1.60225 1.59473 0.97524 1.04972 1.19573 0.90847 0.95786 0.84627 1.21298 1.13655 1.29226 0.91219 0.93511 1.25513 0.95602 0.95513 1.01345 1.70009 1.25425 1.36509 1.24068 0.85754 0.78668 0.78529 0.80299 1.20150 1.20311 1.20147 1.17781 0.89604 0.93083 0.90599 1.21100 0.99899 0.92491 1.00678 1.20284 0.94984 0.94443 1.11434 1.23786 0.91726 0.92628 0.93567 1.81353 1.09243 1.08500 1.08562 1.84181 0.91326 0.94955 1.65276 1.26447 0.85729 1.01711 1.24822 1.42429 1.01061 1.00680 0.97382 1.94676 1.87077 1.01487 1.51427 1.94472 1.41961 1.47051 1.56603 0.93791 0.91443 0.92572 0.90218 0.92703 0.91365 0.93568 0.93345 0.92025 0.90148 0.93310 0.94863 0.99239 0.92651 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.95 71.98 0.64 -2.40 16 2 C -0.09 -1.94 2.92 -10.80 -0.03 -1.97 16 3 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 4 C -0.10 -3.05 4.63 30.59 0.14 -2.91 16 5 C 0.06 1.80 4.36 86.30 0.38 2.18 16 6 N -0.50 -18.66 3.16 -703.96 -2.23 -20.89 16 7 C 0.22 9.92 4.50 85.56 0.39 10.30 16 8 C -0.52 -27.13 8.73 25.60 0.22 -26.90 16 9 H 0.05 2.55 7.38 -2.91 -0.02 2.53 16 10 C 0.02 1.07 5.46 84.65 0.46 1.53 16 11 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 12 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 16 C 0.20 6.66 3.77 36.71 0.14 6.80 16 17 C -0.10 -2.77 8.84 21.77 0.19 -2.57 16 18 C -0.09 -2.02 6.31 23.12 0.15 -1.88 16 19 C 0.30 6.90 15.82 88.33 1.40 8.30 16 20 N -0.40 -10.38 18.54 19.01 0.35 -10.03 16 21 S 0.37 8.56 23.07 -56.49 -1.30 7.25 16 22 C -0.18 -6.01 7.32 81.02 0.59 -5.41 16 23 N 0.07 2.53 4.46 -47.66 -0.21 2.32 16 24 O -0.12 -5.25 17.77 18.89 0.34 -4.91 16 25 O -0.20 -7.20 19.07 18.89 0.36 -6.84 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.13 6.56 -2.39 -0.02 1.11 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.66 6.37 -2.39 -0.02 1.65 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.06 8.06 -2.39 -0.02 2.05 16 36 H 0.05 1.31 6.25 -2.39 -0.01 1.30 16 37 H 0.03 1.67 6.08 -2.39 -0.01 1.65 16 38 H -0.01 -0.48 7.44 -2.39 -0.02 -0.50 16 39 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 40 H 0.18 4.35 7.72 -2.91 -0.02 4.33 16 Total: -1.00 -61.42 362.18 6.02 -55.40 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.07 Total: 0.46 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 5.33 Total: -17.23 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.80 Total: -79.71 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.70 Total: -11.75 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -1.30 Total: 7.25 kcal Total: -61.42 6.02 -55.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334956908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.023 kcal (2) G-P(sol) polarization free energy of solvation -61.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds