Wall clock time and date at job start Tue Mar 31 2020 14:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47331 * 2 1 4 4 C 1.50703 * 109.47543 * 239.99791 * 2 1 3 5 5 H 1.07996 * 120.00020 * 240.00478 * 4 2 1 6 6 C 1.37875 * 119.99829 * 59.99719 * 4 2 1 7 7 N 1.31522 * 119.99911 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47233 * 60.00080 * 8 6 4 10 10 H 1.48500 * 109.47389 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46982 * 300.00628 * 8 6 4 12 12 C 1.53005 * 109.46902 * 119.99986 * 2 1 3 13 13 S 1.81401 * 109.46960 * 299.99966 * 12 2 1 14 14 O 1.42102 * 110.54292 * 68.37556 * 13 12 2 15 15 O 1.42093 * 110.54339 * 291.62357 * 13 12 2 16 16 N 1.65596 * 104.44706 * 180.02562 * 13 12 2 17 17 C 1.46507 * 120.00172 * 65.00167 * 16 13 12 18 18 C 1.50697 * 109.47283 * 164.99752 * 17 16 13 19 19 C 1.38695 * 120.74740 * 89.99752 * 18 17 16 20 20 C 1.38471 * 119.38447 * 179.97438 * 19 18 17 21 21 N 1.31586 * 120.91270 * 359.97438 * 20 19 18 22 22 C 1.32787 * 121.62158 * 0.02562 * 21 20 19 23 23 C 1.43205 * 119.73905 * 179.97438 * 22 21 20 24 24 N 9.10163 * 130.29795 * 127.87240 * 12 1 2 25 25 C 1.38496 * 120.74899 * 270.23854 * 18 17 16 26 26 H 1.08996 * 109.47564 * 300.00322 * 1 2 3 27 27 H 1.09004 * 109.47168 * 60.00321 * 1 2 3 28 28 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47381 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47399 * 299.99740 * 3 2 1 31 31 H 1.09006 * 109.46850 * 59.99900 * 3 2 1 32 32 H 0.96993 * 119.99755 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47207 * 180.02562 * 12 2 1 34 34 H 1.09000 * 109.46935 * 60.00068 * 12 2 1 35 35 H 0.97009 * 120.00353 * 244.99792 * 16 13 12 36 36 H 1.08997 * 109.46930 * 44.99963 * 17 16 13 37 37 H 1.08996 * 109.47153 * 284.99833 * 17 16 13 38 38 H 1.08000 * 120.31024 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.54422 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.47286 * 0.03487 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0077 10 1 1.8270 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0278 -0.0183 2.8543 15 8 2.0478 1.4100 2.8544 16 7 2.0539 -0.7400 3.9936 17 6 3.5025 -0.7963 4.2055 18 6 3.7879 -1.3240 5.5879 19 6 3.9416 -2.6844 5.8097 20 6 4.2037 -3.1384 7.0914 21 7 4.3090 -2.2976 8.0981 22 6 4.1688 -0.9881 7.9290 23 6 4.2909 -0.1095 9.0533 24 7 4.3855 0.5851 9.9459 25 6 3.8977 -0.4619 6.6662 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1616 -3.4844 33 1 3.1299 -0.7209 1.2496 34 1 1.6765 -1.7489 1.2493 35 1 1.4572 -1.2146 4.5934 36 1 3.9236 0.2040 4.1044 37 1 3.9527 -1.4566 3.4644 38 1 3.8584 -3.3831 4.9904 39 1 4.3243 -4.1972 7.2670 40 1 3.7793 0.6029 6.5304 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364077381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:08 Heat of formation + Delta-G solvation = -28.196092 kcal Electronic energy + Delta-G solvation = -24607.510938 eV Core-core repulsion = 20934.980446 eV Total energy + Delta-G solvation = -3672.530491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46003 -38.09940 -38.05715 -37.83578 -36.92405 -36.70773 -33.58171 -33.18546 -32.64359 -28.25772 -27.63171 -27.47152 -27.17093 -25.59240 -23.69556 -21.36292 -20.26886 -19.98755 -18.66722 -17.85080 -17.81082 -17.44945 -16.88404 -16.82451 -16.57185 -15.95193 -15.76437 -15.45581 -14.99677 -14.72519 -14.52126 -14.36155 -14.34202 -14.10861 -13.98656 -13.79063 -13.74934 -13.24052 -12.96786 -12.83375 -12.79891 -12.77747 -12.71078 -12.42132 -12.13666 -12.11339 -11.89172 -11.49662 -11.33056 -10.88147 -10.73317 -10.66186 -10.36323 -10.29469 -10.19197 -7.98431 -6.16763 -0.62071 -0.44649 0.11444 1.37689 1.48953 1.50012 1.56306 1.69676 2.04364 2.41852 2.48116 2.84809 2.93196 3.24418 3.33956 3.48662 3.68425 3.87613 3.99773 4.07174 4.19290 4.28244 4.46242 4.60988 4.67157 4.71087 4.82790 4.85877 4.93258 4.94970 5.07121 5.15113 5.22856 5.46203 5.54156 5.56701 5.70117 6.03848 6.12318 6.18190 6.19673 6.39299 6.72581 6.89248 7.51914 9.00940 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024008 B = 0.002846 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.974667 B = 9836.315134 C =10373.542290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.513 4.513 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.270 1.270 12 C -0.584 4.584 13 S 2.612 3.388 14 O -0.995 6.995 15 O -0.991 6.991 16 N -1.111 6.111 17 C 0.142 3.858 18 C -0.053 4.053 19 C -0.106 4.106 20 C 0.110 3.890 21 N -0.473 5.473 22 C 0.167 3.833 23 C 0.285 3.715 24 N -0.435 5.435 25 C -0.100 4.100 26 H 0.032 0.968 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.259 0.741 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.424 0.576 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.186 0.814 39 H 0.204 0.796 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -10.717 13.878 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.552 4.552 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.196 1.196 12 C -0.716 4.716 13 S 2.710 3.290 14 O -0.985 6.985 15 O -0.980 6.980 16 N -0.872 5.872 17 C 0.017 3.983 18 C -0.063 4.063 19 C -0.127 4.127 20 C -0.050 4.050 21 N -0.184 5.184 22 C 0.030 3.970 23 C -0.031 4.031 24 N -0.112 5.112 25 C -0.124 4.124 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.260 0.740 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.203 0.797 39 H 0.220 0.780 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.496 -8.940 15.954 19.765 hybrid contribution -0.102 -0.527 -2.027 2.097 sum 7.394 -9.468 13.927 18.392 Atomic orbital electron populations 1.22232 0.98125 1.00505 1.01191 1.17905 0.92067 0.92134 0.91207 1.22221 1.00018 0.98475 1.01220 1.21308 1.31421 1.12278 0.90235 0.91339 1.25680 0.95294 0.95647 1.01730 1.69951 1.37377 1.23815 1.23742 0.85710 0.78811 0.78728 0.78933 1.19667 1.21929 1.19554 1.30435 1.13086 1.13496 1.14625 1.04773 0.73447 0.74860 0.75929 1.93519 1.31681 1.87022 1.86280 1.93510 1.78414 1.40110 1.85992 1.55425 1.14537 1.70905 1.46313 1.20566 0.79844 1.04019 0.93888 1.20199 0.97326 0.94191 0.94562 1.22856 0.94416 0.95323 1.00065 1.23434 0.93739 1.00711 0.87122 1.67514 1.11810 1.01857 1.37179 1.16231 1.04213 0.88979 0.87540 1.25322 0.93022 0.92553 0.92247 1.81224 1.09014 1.10794 1.10169 1.22147 0.96578 1.02743 0.90899 0.94947 0.91435 0.93998 0.93747 0.91520 0.94845 0.93127 0.83581 0.83844 0.73976 0.88852 0.86398 0.79701 0.77960 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 7.77 71.98 0.56 -7.06 16 2 C 0.07 3.04 0.52 -52.93 -0.03 3.01 16 3 C -0.16 -7.47 7.78 71.98 0.56 -6.91 16 4 C -0.51 -24.75 8.01 25.60 0.21 -24.55 16 5 H 0.07 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 0.79 5.15 84.65 0.44 1.23 16 7 N -0.91 -48.86 9.35 21.45 0.20 -48.66 16 8 Si 0.95 40.15 29.54 68.60 2.03 42.17 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 12 C -0.58 -18.25 5.01 71.98 0.36 -17.88 16 13 S 2.61 79.17 4.49 -56.49 -0.25 78.92 16 14 O -0.99 -36.98 15.70 -127.65 -2.00 -38.99 16 15 O -0.99 -35.80 15.11 -127.65 -1.93 -37.73 16 16 N -1.11 -19.88 5.88 -190.79 -1.12 -21.00 16 17 C 0.14 1.75 6.30 85.63 0.54 2.29 16 18 C -0.05 -0.55 5.31 -19.69 -0.10 -0.65 16 19 C -0.11 -0.59 9.82 22.43 0.22 -0.37 16 20 C 0.11 0.83 11.18 84.79 0.95 1.77 16 21 N -0.47 -7.14 10.28 -189.21 -1.94 -9.08 16 22 C 0.17 2.75 6.58 40.54 0.27 3.02 16 23 C 0.29 6.05 15.53 88.34 1.37 7.42 16 24 N -0.43 -11.16 18.53 18.99 0.35 -10.81 16 25 C -0.10 -1.35 9.50 22.63 0.21 -1.14 16 26 H 0.03 1.45 5.46 -2.39 -0.01 1.43 16 27 H 0.07 3.53 6.07 -2.38 -0.01 3.51 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 31 H 0.03 1.47 5.46 -2.38 -0.01 1.46 16 32 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.15 3.69 8.14 -2.39 -0.02 3.68 16 34 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.42 6.16 8.61 -96.73 -0.83 5.32 16 36 H 0.09 1.30 7.65 -2.39 -0.02 1.28 16 37 H 0.12 0.75 8.10 -2.39 -0.02 0.73 16 38 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -72.75 348.88 1.13 -71.62 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.25 Total: 13.38 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 5.55 Total: -39.82 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -2.51 Total: -89.56 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -3.93 Total: -76.71 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 79.17 SS G_CDS: -0.25 Total: 78.92 kcal Total: -72.75 1.13 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364077381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.428 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds