Wall clock time and date at job start Tue Mar 31 2020 14:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.50694 * 109.47062 * 239.99560 * 2 1 3 5 5 H 1.08004 * 119.99764 * 237.69348 * 4 2 1 6 6 C 1.37877 * 120.00023 * 57.69616 * 4 2 1 7 7 N 1.31507 * 120.00005 * 6.58211 * 6 4 2 8 8 Si 1.86799 * 120.00080 * 186.57997 * 6 4 2 9 9 H 1.48497 * 109.47252 * 84.99532 * 8 6 4 10 10 H 1.48501 * 109.47260 * 204.99475 * 8 6 4 11 11 H 1.48504 * 109.47025 * 324.99763 * 8 6 4 12 12 C 1.52996 * 109.46824 * 119.99466 * 2 1 3 13 13 S 1.81405 * 109.47437 * 299.99886 * 12 2 1 14 14 O 1.42103 * 110.53822 * 68.37787 * 13 12 2 15 15 O 1.42095 * 110.54354 * 291.62686 * 13 12 2 16 16 N 1.65605 * 104.44804 * 180.02562 * 13 12 2 17 17 C 1.46495 * 119.99985 * 65.00264 * 16 13 12 18 18 C 1.50704 * 109.46945 * 164.99943 * 17 16 13 19 19 C 1.38356 * 119.45576 * 95.00269 * 18 17 16 20 20 C 1.38342 * 119.31121 * 180.02562 * 19 18 17 21 21 C 1.40068 * 118.28396 * 0.24325 * 20 19 18 22 22 C 1.43201 * 120.56602 * 179.75139 * 21 20 19 23 23 N 9.91512 * 139.26899 * 156.24783 * 12 1 2 24 24 C 1.39583 * 118.87101 * 359.50971 * 21 20 19 25 25 N 1.31699 * 120.55364 * 0.50479 * 24 21 20 26 26 H 1.09002 * 109.47137 * 306.67412 * 1 2 3 27 27 H 1.09000 * 109.46778 * 66.67228 * 1 2 3 28 28 H 1.08995 * 109.47226 * 186.67339 * 1 2 3 29 29 H 1.09003 * 109.46934 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47167 * 299.99247 * 3 2 1 31 31 H 1.08998 * 109.47668 * 60.00047 * 3 2 1 32 32 H 0.97005 * 120.00191 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47484 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.47253 * 60.00203 * 12 2 1 35 35 H 0.97005 * 119.99569 * 244.99542 * 16 13 12 36 36 H 1.08999 * 109.47621 * 44.99672 * 17 16 13 37 37 H 1.08999 * 109.47251 * 284.99815 * 17 16 13 38 38 H 1.08006 * 120.34061 * 0.03998 * 19 18 17 39 39 H 1.07995 * 120.85299 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.72662 * 180.22358 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6836 -1.5664 -1.1316 6 6 1.6605 -0.2679 -2.4821 7 7 0.9756 0.8476 -2.6085 8 14 2.1297 -1.2527 -3.9985 9 1 1.1192 -2.3159 -4.2304 10 1 2.1798 -0.3518 -5.1779 11 1 3.4630 -1.8734 -3.7926 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1341 2.7304 14 8 0.0279 -0.0181 2.8544 15 8 2.0479 1.4102 2.8543 16 7 2.0541 -0.7397 3.9937 17 6 3.5026 -0.7960 4.2055 18 6 3.7880 -1.3238 5.5880 19 6 4.0395 -2.6730 5.7626 20 6 4.3006 -3.1543 7.0330 21 6 4.2943 -2.2476 8.1006 22 6 4.5530 -2.6938 9.4365 23 7 4.7557 -3.0500 10.4965 24 6 4.0365 -0.9009 7.8395 25 7 3.7934 -0.4916 6.6116 26 1 -0.3633 0.6138 0.8242 27 1 -0.3633 0.4070 -0.9437 28 1 -0.3633 -1.0206 0.1194 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7137 1.1589 -3.4891 33 1 3.1300 -0.7216 1.2492 34 1 1.6766 -1.7488 1.2494 35 1 1.4574 -1.2143 4.5935 36 1 3.9238 0.2042 4.1043 37 1 3.9528 -1.4564 3.4644 38 1 4.0324 -3.3434 4.9158 39 1 4.4999 -4.2029 7.1979 40 1 4.0318 -0.1893 8.6518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414274449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:05 Heat of formation + Delta-G solvation = -30.769173 kcal Electronic energy + Delta-G solvation = -24515.964966 eV Core-core repulsion = 20843.322897 eV Total energy + Delta-G solvation = -3672.642069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44002 -38.07277 -38.05328 -37.86408 -36.83085 -36.32953 -33.67827 -33.57736 -32.47784 -28.26925 -27.78833 -27.62319 -27.17501 -24.87140 -23.70943 -21.34967 -20.22044 -20.13815 -18.85217 -18.00342 -17.85809 -17.62811 -16.82836 -16.62140 -16.44247 -15.83853 -15.43932 -15.23303 -15.01189 -14.69771 -14.53819 -14.38138 -14.35565 -14.09647 -14.04088 -13.75677 -13.67943 -13.43217 -13.04365 -12.92542 -12.81086 -12.73347 -12.57708 -12.41001 -12.15238 -12.09037 -11.86940 -11.49449 -11.31240 -10.95573 -10.68293 -10.56112 -10.35204 -10.30823 -10.12453 -7.97905 -6.15420 -0.70072 -0.38928 0.23131 1.48850 1.51022 1.51395 1.58225 1.75582 2.09286 2.49015 2.65776 2.83440 2.94623 3.19193 3.24723 3.42038 3.64084 3.76535 4.00372 4.08795 4.18364 4.29066 4.50192 4.60514 4.67254 4.75407 4.83791 4.92898 4.94837 4.96493 5.03598 5.08024 5.16156 5.46778 5.50307 5.56124 5.71160 6.03935 6.11009 6.18912 6.32869 6.40618 6.86527 6.90193 7.52635 9.01606 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.002714 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.962205 B =10316.014112 C =10907.857068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.162 4.162 4 C -0.511 4.511 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.293 1.293 11 H -0.265 1.265 12 C -0.582 4.582 13 S 2.612 3.388 14 O -0.995 6.995 15 O -0.992 6.992 16 N -1.108 6.108 17 C 0.149 3.851 18 C 0.135 3.865 19 C -0.143 4.143 20 C -0.014 4.014 21 C -0.083 4.083 22 C 0.285 3.715 23 N -0.454 5.454 24 C 0.151 3.849 25 N -0.497 5.497 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.422 0.578 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -9.937 15.896 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.220 4.220 4 C -0.551 4.551 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.219 1.219 11 H -0.189 1.189 12 C -0.715 4.715 13 S 2.710 3.290 14 O -0.985 6.985 15 O -0.981 6.981 16 N -0.868 5.868 17 C 0.023 3.977 18 C -0.003 4.003 19 C -0.163 4.163 20 C -0.041 4.041 21 C -0.089 4.089 22 C -0.031 4.031 23 N -0.130 5.130 24 C -0.010 4.010 25 N -0.206 5.206 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.258 0.742 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.202 0.798 39 H 0.195 0.805 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.701 -8.589 17.227 20.732 hybrid contribution 0.103 -1.308 -1.109 1.717 sum 7.804 -9.896 16.118 20.460 Atomic orbital electron populations 1.22166 0.98059 0.99931 1.01562 1.17929 0.92097 0.92187 0.91228 1.22253 0.99984 0.98501 1.01224 1.21303 1.29757 1.13867 0.90130 0.91280 1.25687 0.95423 0.95617 1.01692 1.69965 1.39568 1.21452 1.23730 0.85659 0.78870 0.78491 0.79093 1.20430 1.21887 1.18918 1.30439 1.13095 1.13520 1.14426 1.04796 0.73453 0.74824 0.75946 1.93517 1.31589 1.87014 1.86396 1.93511 1.78395 1.40258 1.85982 1.55325 1.14296 1.70927 1.46299 1.20534 0.80143 1.04021 0.92966 1.21486 0.93576 0.91161 0.94092 1.22329 0.99237 0.95356 0.99379 1.22033 0.90758 1.01137 0.90219 1.17087 1.09152 0.96012 0.86611 1.25491 0.92528 0.92738 0.92345 1.81352 1.10276 1.08893 1.12484 1.23211 0.90805 0.92708 0.94252 1.67622 1.13510 1.39658 0.99840 0.95429 0.91447 0.93689 0.93869 0.91221 0.95070 0.93110 0.83592 0.83642 0.74249 0.89498 0.85659 0.79768 0.80516 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 7.58 71.98 0.55 -7.02 16 2 C 0.07 3.05 0.52 -52.93 -0.03 3.02 16 3 C -0.16 -7.69 7.79 71.98 0.56 -7.13 16 4 C -0.51 -24.94 8.01 25.60 0.20 -24.73 16 5 H 0.07 3.16 7.75 -2.91 -0.02 3.13 16 6 C 0.02 0.77 5.09 84.66 0.43 1.20 16 7 N -0.91 -49.11 9.39 21.45 0.20 -48.91 16 8 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 C -0.58 -18.98 5.01 71.98 0.36 -18.62 16 13 S 2.61 85.38 4.49 -56.49 -0.25 85.12 16 14 O -0.99 -38.83 15.84 -127.65 -2.02 -40.85 16 15 O -0.99 -38.93 15.11 -127.65 -1.93 -40.86 16 16 N -1.11 -23.60 5.88 -190.79 -1.12 -24.72 16 17 C 0.15 2.45 6.43 85.64 0.55 3.00 16 18 C 0.14 1.90 6.18 42.57 0.26 2.16 16 19 C -0.14 -0.99 9.70 22.32 0.22 -0.78 16 20 C -0.01 -0.08 9.91 22.74 0.23 0.14 16 21 C -0.08 -0.85 5.74 -21.26 -0.12 -0.97 16 22 C 0.28 3.99 15.37 88.33 1.36 5.34 16 23 N -0.45 -8.96 18.54 19.01 0.35 -8.61 16 24 C 0.15 1.93 10.92 85.04 0.93 2.86 16 25 N -0.50 -8.71 10.25 -182.77 -1.87 -10.58 16 26 H 0.03 1.26 5.96 -2.39 -0.01 1.24 16 27 H 0.07 3.55 5.99 -2.39 -0.01 3.53 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.69 6.01 -2.39 -0.01 3.67 16 31 H 0.03 1.42 5.46 -2.39 -0.01 1.41 16 32 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 33 H 0.15 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.15 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.42 7.59 8.61 -96.74 -0.83 6.75 16 36 H 0.09 1.75 7.69 -2.39 -0.02 1.73 16 37 H 0.13 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.18 0.07 8.06 -2.91 -0.02 0.04 16 40 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -73.63 349.19 1.13 -72.50 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.25 Total: 15.93 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 5.50 Total: -41.52 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -2.44 Total: -92.83 kcal Atomic # 8 Polarization: -77.76 SS G_CDS: -3.95 Total: -81.71 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 85.38 SS G_CDS: -0.25 Total: 85.12 kcal Total: -73.63 1.13 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414274449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.734 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds