Wall clock time and date at job start Tue Mar 31 2020 14:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47331 * 2 1 4 4 C 1.35580 * 117.00293 * 180.02562 * 3 2 1 5 5 N 1.29777 * 125.65595 * 359.96469 * 4 3 2 6 6 N 1.26240 * 117.69096 * 180.02562 * 5 4 3 7 7 C 1.29483 * 116.58079 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.15786 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46872 * 90.02300 * 8 7 6 10 10 C 1.46903 * 110.99837 * 170.00146 * 9 8 7 11 11 C 1.50697 * 109.47367 * 290.10584 * 10 9 8 12 12 H 1.07999 * 119.99990 * 356.73961 * 11 10 9 13 13 C 1.37874 * 120.00432 * 176.74701 * 11 10 9 14 14 N 1.31511 * 120.00574 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99606 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47130 * 90.00463 * 15 13 11 17 17 H 1.48501 * 109.47024 * 210.00282 * 15 13 11 18 18 H 1.48496 * 109.47453 * 329.99974 * 15 13 11 19 19 C 1.46903 * 111.00407 * 293.95470 * 9 8 7 20 20 C 1.50696 * 109.47236 * 163.64654 * 19 9 8 21 21 C 1.34517 * 125.78875 * 96.23428 * 20 19 9 22 22 C 1.41383 * 106.84260 * 180.02562 * 21 20 19 23 23 C 1.34518 * 106.83653 * 0.02562 * 22 21 20 24 24 O 1.34297 * 125.79117 * 276.25730 * 20 19 9 25 25 S 1.71313 * 125.65234 * 180.30951 * 4 3 2 26 26 H 1.08994 * 109.47030 * 299.99749 * 1 2 3 27 27 H 1.08997 * 109.47623 * 60.00529 * 1 2 3 28 28 H 1.09005 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47692 * 239.99971 * 2 1 3 30 30 H 1.09002 * 109.47625 * 119.99940 * 2 1 3 31 31 H 1.09002 * 109.46759 * 330.02806 * 8 7 6 32 32 H 1.08998 * 109.47394 * 210.02522 * 8 7 6 33 33 H 1.09003 * 109.47142 * 50.10721 * 10 9 8 34 34 H 1.08999 * 109.47377 * 170.10216 * 10 9 8 35 35 H 0.96996 * 119.99940 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.46684 * 43.64290 * 19 9 8 37 37 H 1.09002 * 109.47065 * 283.65431 * 19 9 8 38 38 H 1.07997 * 126.57605 * 0.05643 * 21 20 19 39 39 H 1.07997 * 126.57952 * 179.97438 * 22 21 20 40 40 H 1.07999 * 125.78313 * 180.26364 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3504 1.5249 -0.0005 5 7 4.2386 0.5787 -0.0004 6 7 5.4551 0.9159 -0.0005 7 6 5.7041 2.1866 -0.0002 8 6 7.0691 2.8252 0.0004 9 7 7.5127 3.0334 -1.3845 10 6 8.7242 3.8631 -1.4300 11 6 8.3805 5.2761 -1.0349 12 1 7.3553 5.5445 -0.8270 13 6 9.3748 6.2264 -0.9390 14 7 9.0748 7.4597 -0.5947 15 14 11.1482 5.7621 -1.2982 16 1 11.4319 5.9701 -2.7410 17 1 12.0564 6.6126 -0.4876 18 1 11.3662 4.3347 -0.9515 19 6 7.7274 1.7505 -2.0672 20 6 7.7843 1.9770 -3.5559 21 6 8.9038 2.1251 -4.2868 22 6 8.4959 2.3142 -5.6273 23 6 7.1514 2.2709 -5.6351 24 8 6.7260 2.0658 -4.3779 25 16 4.1579 3.0358 0.0069 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 7.7752 2.1726 0.5139 32 1 7.0210 3.7849 0.5147 33 1 9.4652 3.4624 -0.7382 34 1 9.1308 3.8572 -2.4413 35 1 9.7745 8.1281 -0.5270 36 1 6.9060 1.0729 -1.8338 37 1 8.6667 1.3122 -1.7300 38 1 9.9194 2.1031 -3.9201 39 1 9.1400 2.4652 -6.4808 40 1 6.5213 2.3776 -6.5057 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:28 Heat of formation + Delta-G solvation = 61.713894 kcal Electronic energy + Delta-G solvation = -24666.383162 eV Core-core repulsion = 20997.751460 eV Total energy + Delta-G solvation = -3668.631702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15165 -41.15070 -38.89959 -37.17660 -32.71354 -32.67910 -32.22240 -31.27668 -30.13067 -28.14220 -26.97727 -25.27211 -23.97959 -23.14800 -21.45173 -20.92198 -20.26543 -19.91323 -19.15095 -17.60992 -17.08679 -16.92183 -16.76275 -15.78584 -15.45865 -14.93395 -14.71393 -14.51359 -14.41352 -13.65532 -13.43300 -13.35731 -13.04059 -12.91536 -12.69009 -12.48380 -12.42669 -12.28992 -12.02102 -11.84258 -11.66506 -11.20990 -11.17341 -10.73056 -10.55124 -10.31977 -10.03683 -9.94457 -9.56835 -9.48829 -9.36271 -8.97511 -8.63153 -8.12267 -7.68893 -6.12065 -4.10675 0.57100 0.67189 1.51834 2.10296 2.66383 2.97520 3.08712 3.24950 3.31900 3.33328 3.38760 4.23557 4.35998 4.57105 4.69055 4.72290 4.85763 5.06301 5.10033 5.20166 5.27155 5.36771 5.37821 5.42191 5.50486 5.61924 5.71871 5.76524 5.88049 6.13871 6.15006 6.26087 6.45717 6.66076 6.67839 6.73522 6.85684 7.42340 7.50575 7.65717 7.74944 8.52877 8.66433 8.94775 9.48752 11.00573 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.004043 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.092764 B = 6923.783313 C = 8450.987436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.273 6.273 4 C 0.163 3.837 5 N -0.335 5.335 6 N -0.234 5.234 7 C 0.022 3.978 8 C 0.141 3.859 9 N -0.519 5.519 10 C 0.158 3.842 11 C -0.514 4.514 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.119 3.881 20 C 0.022 3.978 21 C -0.212 4.212 22 C -0.212 4.212 23 C -0.051 4.051 24 O -0.170 6.170 25 S 0.201 5.799 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.122 0.878 33 H -0.002 1.002 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 -13.368 -1.640 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.178 6.178 4 C -0.153 4.153 5 N -0.189 5.189 6 N -0.072 5.072 7 C -0.260 4.260 8 C 0.009 3.991 9 N -0.245 5.245 10 C 0.033 3.967 11 C -0.552 4.552 12 H 0.100 0.900 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.697 3.303 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.009 4.009 20 C -0.029 4.029 21 C -0.232 4.232 22 C -0.231 4.231 23 C -0.119 4.119 24 O -0.065 6.065 25 S 0.442 5.558 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.016 0.984 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.369 -13.085 -1.728 17.420 hybrid contribution 1.796 -0.658 -0.144 1.918 sum -9.573 -13.743 -1.871 16.853 Atomic orbital electron populations 1.21815 0.92323 1.03170 1.03587 1.22870 0.95311 0.80484 1.03060 1.86310 1.12511 1.30942 1.88065 1.27380 0.90713 0.95818 1.01412 1.71395 0.95394 1.29180 1.22950 1.71206 1.08433 1.13188 1.14397 1.30102 1.00576 0.91215 1.04083 1.20583 0.85562 1.01024 0.91918 1.61890 1.37066 1.12816 1.12684 1.20355 0.85647 0.93521 0.97188 1.20951 0.96569 0.91144 1.46543 0.89996 1.24849 0.98607 0.94808 0.94659 1.69876 1.33358 1.02238 1.47969 0.86937 0.85533 0.78925 0.78881 1.20053 1.21145 1.19067 1.20602 1.02166 0.93031 0.85063 1.22258 0.84359 1.03634 0.92694 1.21539 0.99185 1.09097 0.93394 1.21726 0.95096 1.08393 0.97895 1.23881 0.95349 1.06953 0.85762 1.84010 1.35755 1.69591 1.17130 1.85270 0.99185 1.03170 1.68170 0.91432 0.91381 0.89934 0.91116 0.91158 0.91448 0.86012 0.98445 0.94441 0.92546 0.89236 0.91717 0.83935 0.83924 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.15 0.38 -0.68 16 2 C 0.06 0.61 6.32 37.15 0.23 0.85 16 3 O -0.27 -3.61 10.20 -18.44 -0.19 -3.80 16 4 C 0.16 2.47 8.25 51.89 0.43 2.90 16 5 N -0.34 -5.56 10.94 29.24 0.32 -5.24 16 6 N -0.23 -4.01 10.53 33.58 0.35 -3.66 16 7 C 0.02 0.37 6.47 -13.27 -0.09 0.28 16 8 C 0.14 2.46 5.45 -4.98 -0.03 2.44 16 9 N -0.52 -10.28 4.40 -238.96 -1.05 -11.33 16 10 C 0.16 3.57 3.65 -4.98 -0.02 3.55 16 11 C -0.51 -13.66 8.91 -34.44 -0.31 -13.97 16 12 H 0.08 2.36 7.80 -52.49 -0.41 1.95 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 15 Si 0.87 20.57 27.53 -169.99 -4.68 15.89 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -5.96 6.45 56.52 0.36 -5.60 16 19 C 0.12 2.11 5.38 -4.98 -0.03 2.09 16 20 C 0.02 0.40 6.28 -35.63 -0.22 0.17 16 21 C -0.21 -3.64 9.65 -39.70 -0.38 -4.03 16 22 C -0.21 -3.23 10.91 -39.70 -0.43 -3.67 16 23 C -0.05 -0.77 12.09 29.42 0.36 -0.41 16 24 O -0.17 -3.08 10.65 5.73 0.06 -3.02 16 25 S 0.20 3.03 23.31 -107.50 -2.51 0.53 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.12 2.24 7.01 -51.93 -0.36 1.87 16 33 H 0.00 -0.05 6.91 -51.93 -0.36 -0.41 16 34 H 0.04 0.87 5.92 -51.93 -0.31 0.57 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.09 1.57 6.07 -51.93 -0.32 1.26 16 37 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 38 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -31.47 354.37 -6.93 -38.39 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.15 Total: 1.00 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.20 Total: -8.56 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.40 Total: -45.77 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.13 Total: -6.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.68 Total: 15.89 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.51 Total: 0.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.47 -6.93 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.108 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds