Wall clock time and date at job start Tue Mar 31 2020 14:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99913 * 2 1 4 4 N 1.46498 * 109.46942 * 124.99754 * 3 2 1 5 5 C 1.46507 * 119.99786 * 274.96441 * 4 3 2 6 6 C 1.50707 * 109.46845 * 270.00270 * 5 4 3 7 7 H 1.07997 * 120.00172 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99490 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00481 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99818 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47144 * 59.99826 * 10 8 6 12 12 H 1.48501 * 109.47005 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47081 * 299.99573 * 10 8 6 14 14 C 1.34776 * 120.00356 * 94.97098 * 4 3 2 15 15 O 1.21598 * 120.00191 * 185.55576 * 14 4 3 16 16 C 1.47476 * 119.99539 * 5.54949 * 14 4 3 17 17 C 1.39752 * 120.17641 * 55.03652 * 16 14 4 18 18 C 1.37726 * 119.91673 * 180.25005 * 17 16 14 19 19 C 1.38706 * 120.29030 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 119.81933 * 180.02562 * 19 18 17 21 21 C 1.38202 * 120.35841 * 359.97438 * 19 18 17 22 22 C 1.38644 * 120.07643 * 359.97438 * 21 19 18 23 23 O 1.35652 * 120.14281 * 180.02562 * 22 21 19 24 24 C 1.42904 * 117.00101 * 0.02562 * 23 22 21 25 25 C 1.53002 * 109.46872 * 179.97438 * 24 23 22 26 26 H 1.08002 * 120.00360 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00134 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00472 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46779 * 4.99603 * 3 2 1 30 30 H 1.08999 * 109.47123 * 244.99574 * 3 2 1 31 31 H 1.08995 * 109.47354 * 30.00186 * 5 4 3 32 32 H 1.08998 * 109.47084 * 150.00775 * 5 4 3 33 33 H 0.97002 * 120.00333 * 179.97438 * 9 8 6 34 34 H 1.07994 * 120.03745 * 0.24984 * 17 16 14 35 35 H 1.07999 * 119.85691 * 180.02562 * 18 17 16 36 36 H 1.08007 * 119.96020 * 180.02562 * 21 19 18 37 37 H 1.08996 * 109.47209 * 299.99963 * 24 23 22 38 38 H 1.08997 * 109.46986 * 60.00640 * 24 23 22 39 39 H 1.09000 * 109.46870 * 179.97438 * 25 24 23 40 40 H 1.08989 * 109.47789 * 300.00462 * 25 24 23 41 41 H 1.09010 * 109.46799 * 60.00882 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5284 1.7629 2.4522 6 6 2.7146 3.2522 2.5889 7 1 3.1367 3.8208 1.7736 8 6 2.3459 3.8887 3.7551 9 7 1.8313 3.1964 4.7478 10 14 2.5759 5.7347 3.9245 11 1 1.7912 6.4299 2.8727 12 1 2.1044 6.1715 5.2632 13 1 4.0144 6.0704 3.7720 14 6 4.2774 0.9603 0.9575 15 8 5.0238 0.8854 1.9145 16 6 4.7769 0.6443 -0.3937 17 6 4.6459 1.5763 -1.4268 18 6 5.1096 1.2736 -2.6878 19 6 5.7061 0.0466 -2.9381 20 17 6.2868 -0.3218 -4.5320 21 6 5.8417 -0.8837 -1.9251 22 6 5.3812 -0.5943 -0.6497 23 8 5.5140 -1.5062 0.3457 24 6 6.1395 -2.7465 0.0101 25 6 6.2000 -3.6393 1.2511 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4026 -0.9313 31 1 1.4724 1.5171 2.5635 32 1 3.1038 1.2525 3.2245 33 1 1.5722 3.6441 5.5684 34 1 4.1817 2.5326 -1.2365 35 1 5.0082 1.9947 -3.4854 36 1 6.3076 -1.8369 -2.1270 37 1 5.5628 -3.2452 -0.7689 38 1 7.1505 -2.5577 -0.3508 39 1 6.6767 -4.5855 0.9951 40 1 6.7769 -3.1405 2.0298 41 1 5.1891 -3.8283 1.6124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293686785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:03 Heat of formation + Delta-G solvation = -29.008491 kcal Electronic energy + Delta-G solvation = -25229.026809 eV Core-core repulsion = 21522.124632 eV Total energy + Delta-G solvation = -3706.902177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59569 -38.73288 -37.72946 -36.40270 -35.59733 -33.16234 -32.12925 -32.04544 -31.08412 -29.74627 -27.49953 -25.54794 -24.28203 -23.87671 -22.11025 -21.89560 -19.91705 -19.20873 -18.07861 -16.80318 -16.56558 -16.27344 -16.25139 -15.54739 -15.45283 -14.77592 -14.46988 -14.26749 -13.95841 -13.72268 -13.60561 -12.96650 -12.83769 -12.79578 -12.73844 -12.21967 -12.19555 -11.89270 -11.68219 -11.43204 -11.25632 -11.23142 -11.15338 -11.02899 -10.87691 -10.72239 -10.55638 -10.18365 -9.65237 -9.22250 -9.06281 -8.83465 -8.42063 -8.30197 -7.65744 -6.02606 -4.07902 0.81078 1.20097 1.86601 2.51358 3.04382 3.19256 3.32654 3.37344 3.40321 3.66391 3.99137 4.45388 4.59485 4.75308 4.77673 4.86418 4.93305 5.06105 5.09649 5.26402 5.31087 5.31944 5.44043 5.49036 5.56745 5.66857 5.68954 5.85241 5.99106 6.01410 6.06267 6.15364 6.24005 6.44429 6.86319 6.96789 7.10747 7.27106 7.48757 7.56406 7.93708 8.24351 8.39936 8.89666 9.07446 9.57003 11.05367 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.003891 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.238699 B = 7195.260271 C = 7738.695817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.128 3.872 4 N -0.586 5.586 5 C 0.248 3.752 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.557 3.443 15 O -0.522 6.522 16 C -0.140 4.140 17 C -0.040 4.040 18 C -0.153 4.153 19 C 0.015 3.985 20 Cl -0.070 7.070 21 C -0.209 4.209 22 C 0.183 3.817 23 O -0.289 6.289 24 C 0.051 3.949 25 C -0.152 4.152 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -10.955 -17.196 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.004 3.996 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.343 3.657 15 O -0.398 6.398 16 C -0.144 4.144 17 C -0.059 4.059 18 C -0.172 4.172 19 C -0.012 4.012 20 Cl -0.042 7.042 21 C -0.229 4.229 22 C 0.135 3.865 23 O -0.202 6.202 24 C -0.024 4.024 25 C -0.209 4.209 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.047 -10.999 -16.371 20.358 hybrid contribution 0.204 0.804 -0.246 0.865 sum 5.251 -10.195 -16.617 20.190 Atomic orbital electron populations 1.23785 0.95772 1.01677 1.01000 1.23370 0.96290 0.99010 0.99486 1.20795 0.93155 0.95428 0.90215 1.48134 1.07673 1.63700 1.12202 1.19294 0.95282 0.94847 0.77639 1.21396 1.42025 0.92655 1.00690 0.92465 1.24920 0.95040 0.98505 0.95487 1.69927 1.42266 1.35904 1.05102 0.86576 0.78642 0.85124 0.77181 1.20232 1.21184 1.20165 1.17766 0.82818 0.78078 0.87043 1.90781 1.55927 1.51974 1.41122 1.19739 1.04722 0.93426 0.96500 1.21139 0.95590 0.98769 0.90406 1.20850 1.02408 0.96025 0.97918 1.20708 0.99196 0.95270 0.85996 1.98368 1.87274 1.94684 1.23825 1.20965 1.08581 1.01649 0.91703 1.18697 0.92658 0.88698 0.86460 1.86269 1.74869 1.25130 1.33883 1.22885 0.97145 0.83137 0.99264 1.21763 1.03735 0.98206 0.97226 0.88870 0.88285 0.88010 0.89534 0.90119 0.94806 0.93693 0.92656 0.83407 0.84303 0.84169 0.91969 0.91863 0.90440 0.91070 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 14.32 29.02 0.42 -2.12 16 2 C -0.16 -2.50 9.84 -36.02 -0.35 -2.86 16 3 C 0.13 2.15 5.67 -5.19 -0.03 2.12 16 4 N -0.59 -12.70 2.44 -177.68 -0.43 -13.13 16 5 C 0.25 6.56 5.22 -5.19 -0.03 6.53 16 6 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 C 0.56 12.25 6.78 -12.50 -0.08 12.17 16 15 O -0.52 -13.83 16.35 3.18 0.05 -13.78 16 16 C -0.14 -2.39 4.91 -104.84 -0.51 -2.91 16 17 C -0.04 -0.56 7.47 -39.20 -0.29 -0.85 16 18 C -0.15 -1.77 9.80 -39.60 -0.39 -2.16 16 19 C 0.02 0.18 6.32 -39.42 -0.25 -0.07 16 20 Cl -0.07 -0.70 28.94 -51.86 -1.50 -2.20 16 21 C -0.21 -2.56 8.80 -39.44 -0.35 -2.91 16 22 C 0.18 2.82 6.69 -38.70 -0.26 2.56 16 23 O -0.29 -4.64 9.36 -20.76 -0.19 -4.83 16 24 C 0.05 0.55 5.46 37.16 0.20 0.75 16 25 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 26 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 28 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 30 H 0.08 1.16 4.42 -51.93 -0.23 0.93 16 31 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.15 1.93 7.59 -52.49 -0.40 1.53 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.14 1.38 6.30 -52.48 -0.33 1.05 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.78 8.14 -51.94 -0.42 0.35 16 41 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -33.50 367.02 -8.25 -41.75 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.45 Total: 0.16 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.97 Total: -4.36 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.30 Total: -38.96 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.14 Total: -18.61 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.50 -8.25 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293686785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.740 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds