Wall clock time and date at job start Tue Mar 31 2020 13:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.48395 * 2 1 4 4 O 1.42901 * 109.47966 * 120.02790 * 2 1 3 5 5 C 1.42908 * 114.09811 * 181.15425 * 4 2 1 6 6 C 1.53096 * 109.41053 * 298.83843 * 5 4 2 7 7 C 1.53172 * 109.16553 * 57.61024 * 6 5 4 8 8 C 1.53099 * 109.48825 * 239.97288 * 2 1 3 9 9 H 1.09000 * 109.52374 * 302.30633 * 8 2 1 10 10 C 1.50693 * 109.52484 * 62.49699 * 8 2 1 11 11 O 1.21279 * 119.99796 * 359.97438 * 10 8 2 12 12 N 1.34773 * 120.00276 * 179.97438 * 10 8 2 13 13 C 1.39264 * 120.00302 * 174.43101 * 12 10 8 14 14 C 1.39470 * 119.84029 * 335.09834 * 13 12 10 15 15 C 1.36374 * 120.18080 * 179.97438 * 14 13 12 16 16 C 1.40893 * 119.84658 * 359.97438 * 15 14 13 17 17 C 1.41156 * 120.15344 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00223 * 34.92432 * 17 16 15 19 19 C 1.39902 * 119.99792 * 214.92490 * 17 16 15 20 20 N 1.30881 * 120.00015 * 355.19141 * 19 17 16 21 21 Si 1.86799 * 120.00110 * 175.19337 * 19 17 16 22 22 H 1.48498 * 109.46924 * 60.00015 * 21 19 17 23 23 H 1.48506 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47065 * 299.99939 * 21 19 17 25 25 C 1.40842 * 119.68646 * 359.97438 * 16 15 14 26 26 C 1.36478 * 119.81640 * 359.74751 * 25 16 15 27 27 Cl 1.73593 * 119.92414 * 180.27357 * 26 25 16 28 28 H 1.08999 * 109.47332 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47160 * 59.99936 * 1 2 3 30 30 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47645 * 58.81638 * 5 4 2 32 32 H 1.08996 * 109.47900 * 178.85348 * 5 4 2 33 33 H 1.09004 * 109.52043 * 177.51601 * 6 5 4 34 34 H 1.08997 * 109.51928 * 297.63552 * 6 5 4 35 35 H 1.08998 * 109.54846 * 62.88204 * 7 6 5 36 36 H 1.08994 * 109.54533 * 183.06254 * 7 6 5 37 37 H 0.97000 * 119.99730 * 354.44140 * 12 10 8 38 38 H 1.07997 * 119.90604 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.07922 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00086 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.08592 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0065 -0.6742 1.1664 5 6 3.4307 -0.7090 1.2792 6 6 4.0178 -1.4597 0.0811 7 6 3.5714 -0.7706 -1.2120 8 6 2.0408 -0.7222 -1.2496 9 1 1.6447 -1.7375 -1.2710 10 6 1.5905 0.0214 -2.4805 11 8 0.9258 1.0298 -2.3705 12 7 1.9263 -0.4342 -3.7036 13 6 1.4152 0.1845 -4.8417 14 6 0.2124 0.8869 -4.7689 15 6 -0.2942 1.4958 -5.8790 16 6 0.4006 1.4147 -7.1020 17 6 -0.1182 2.0421 -8.2551 18 1 -0.6497 2.9782 -8.1678 19 6 0.0563 1.4513 -9.5112 20 7 0.7801 0.3673 -9.6297 21 14 -0.7439 2.2096 -11.0193 22 1 -0.2422 3.5953 -11.2018 23 1 -0.4086 1.3992 -12.2178 24 1 -2.2174 2.2366 -10.8370 25 6 1.6152 0.7048 -7.1685 26 6 2.1130 0.1053 -6.0480 27 17 3.6133 -0.7644 -6.1251 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8190 0.3093 1.2959 32 1 3.7099 -1.2199 2.2007 33 1 5.1061 -1.4493 0.1424 34 1 3.6626 -2.4902 0.0873 35 1 3.9690 0.2438 -1.2407 36 1 3.9409 -1.3315 -2.0704 37 1 2.5240 -1.1931 -3.7912 38 1 -0.3191 0.9487 -3.8308 39 1 -1.2259 2.0389 -5.8208 40 1 0.9007 -0.0425 -10.5005 41 1 2.1534 0.6389 -8.1025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334533657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:24 Heat of formation + Delta-G solvation = -81.243255 kcal Electronic energy + Delta-G solvation = -25047.079724 eV Core-core repulsion = 21337.912478 eV Total energy + Delta-G solvation = -3709.167247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59369 -38.94240 -37.44793 -35.58516 -34.63684 -33.96015 -32.94137 -32.63918 -29.51835 -29.25278 -27.92126 -25.54076 -24.56003 -22.55862 -21.95550 -21.13098 -20.58252 -19.58626 -17.71955 -17.19456 -16.80118 -16.09769 -15.50757 -15.37266 -15.12033 -14.81522 -14.48995 -14.31635 -13.82982 -13.42906 -13.15311 -12.90966 -12.77829 -12.59870 -12.36289 -12.24991 -12.01125 -11.71529 -11.47404 -11.42190 -11.20776 -11.17536 -11.03536 -10.97082 -10.53653 -10.48914 -10.40749 -10.12943 -9.93009 -9.63075 -9.50129 -9.19322 -8.85752 -7.60373 -7.02143 -6.75473 -4.48818 2.27368 2.78463 2.95067 3.03582 3.05888 3.09058 3.22949 3.43366 3.83077 3.88746 4.48257 4.51619 4.57012 4.63280 4.75639 5.00483 5.15867 5.18181 5.38621 5.41448 5.42317 5.52845 5.64366 5.66130 5.76835 5.92296 5.94584 6.10310 6.13840 6.36544 6.48695 6.59065 6.83406 6.95906 7.10365 7.11862 7.27259 7.52207 7.60864 7.82974 8.03353 8.09788 8.39330 8.58067 8.74494 8.77482 10.15215 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024642 B = 0.003169 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.007430 B = 8833.706755 C = 9812.297277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 H 0.067 0.933 4 O -0.380 6.380 5 C 0.058 3.942 6 C -0.153 4.153 7 C -0.116 4.116 8 C -0.137 4.137 9 H 0.103 0.897 10 C 0.510 3.490 11 O -0.526 6.526 12 N -0.645 5.645 13 C 0.016 3.984 14 C -0.084 4.084 15 C -0.199 4.199 16 C 0.106 3.894 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.069 3.931 20 N -0.806 5.806 21 Si 0.919 3.081 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.133 4.133 26 C -0.026 4.026 27 Cl -0.120 7.120 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.282 0.718 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -4.553 13.241 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.085 0.915 4 O -0.299 6.299 5 C -0.019 4.019 6 C -0.191 4.191 7 C -0.154 4.154 8 C -0.159 4.159 9 H 0.121 0.879 10 C 0.297 3.703 11 O -0.404 6.404 12 N -0.288 5.288 13 C -0.078 4.078 14 C -0.104 4.104 15 C -0.219 4.219 16 C 0.103 3.897 17 C -0.486 4.486 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.432 5.432 21 Si 0.743 3.257 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.154 4.154 26 C -0.054 4.054 27 Cl -0.092 7.092 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.914 -4.185 13.283 14.768 hybrid contribution 0.434 -0.311 -1.100 1.223 sum 5.348 -4.495 12.183 14.045 Atomic orbital electron populations 1.21983 0.92281 1.02564 1.04082 1.21800 0.95751 0.94641 0.82539 0.91509 1.87953 1.20699 1.78287 1.42918 1.22575 0.81480 0.99642 0.98164 1.22191 1.01275 1.00612 0.95038 1.21610 0.93188 1.02056 0.98564 1.22001 0.97603 1.01776 0.94501 0.87884 1.20218 0.80911 0.85080 0.84122 1.90608 1.38978 1.24627 1.86188 1.43024 1.47969 1.33184 1.04582 1.16977 0.97166 1.08981 0.84658 1.20518 0.93159 0.97884 0.98874 1.20933 1.00652 1.06619 0.93674 1.17605 0.89363 0.90554 0.92182 1.19476 1.31194 1.07403 0.90559 0.90142 1.25926 0.93880 0.94265 1.00600 1.69726 1.30675 1.16505 1.26311 0.86188 0.80316 0.79749 0.79416 1.18921 1.20319 1.18968 1.21215 0.96725 1.01019 0.96411 1.20399 0.87322 1.02337 0.95376 1.98249 1.35545 1.76808 1.98628 0.92173 0.88476 0.92582 0.93157 0.88894 0.90501 0.90777 0.91009 0.90763 0.76621 0.85653 0.87845 0.90725 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.28 37.16 0.34 -1.62 16 2 C 0.11 1.42 2.40 -26.68 -0.06 1.35 16 3 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 4 O -0.38 -4.60 10.41 -35.23 -0.37 -4.97 16 5 C 0.06 0.53 6.84 37.21 0.25 0.79 16 6 C -0.15 -1.29 6.14 -26.59 -0.16 -1.45 16 7 C -0.12 -1.21 5.18 -26.55 -0.14 -1.35 16 8 C -0.14 -1.71 2.24 -91.63 -0.21 -1.91 16 9 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 10 C 0.51 8.33 6.66 -10.99 -0.07 8.26 16 11 O -0.53 -10.12 10.95 5.56 0.06 -10.06 16 12 N -0.64 -11.17 5.09 -9.71 -0.05 -11.22 16 13 C 0.02 0.34 6.44 -83.52 -0.54 -0.20 16 14 C -0.08 -1.90 8.64 -39.79 -0.34 -2.24 16 15 C -0.20 -4.73 9.74 -39.25 -0.38 -5.11 16 16 C 0.11 2.71 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -11.59 9.02 -37.85 -0.34 -11.93 16 18 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.68 5.42 -17.33 -0.09 1.59 16 20 N -0.81 -20.08 10.59 55.55 0.59 -19.49 16 21 Si 0.92 18.25 29.56 -169.99 -5.03 13.23 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 25 C -0.13 -3.31 8.38 -39.23 -0.33 -3.64 16 26 C -0.03 -0.59 6.30 -39.72 -0.25 -0.84 16 27 Cl -0.12 -2.26 27.75 -51.86 -1.44 -3.70 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.44 5.74 -51.93 -0.30 1.14 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 37 H 0.40 6.01 7.10 -40.82 -0.29 5.72 16 38 H 0.13 2.74 5.76 -52.49 -0.30 2.43 16 39 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 41 H 0.14 3.75 6.13 -52.49 -0.32 3.43 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -27.18 343.59 -9.34 -36.52 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.37 Total: 10.71 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.92 Total: -16.19 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.54 Total: -30.72 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.31 Total: -15.03 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.44 Total: -3.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.18 -9.34 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334533657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.721 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds