Wall clock time and date at job start Tue Mar 31 2020 13:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.48395 * 2 1 4 4 O 1.42901 * 109.47966 * 120.02790 * 2 1 3 5 5 C 1.42908 * 114.09811 * 181.15425 * 4 2 1 6 6 C 1.53096 * 109.41053 * 298.83843 * 5 4 2 7 7 C 1.53172 * 109.16553 * 57.61024 * 6 5 4 8 8 C 1.53099 * 109.48825 * 239.97288 * 2 1 3 9 9 H 1.09000 * 109.52374 * 302.30633 * 8 2 1 10 10 C 1.50693 * 109.52484 * 62.49699 * 8 2 1 11 11 O 1.21279 * 119.99796 * 359.97438 * 10 8 2 12 12 N 1.34773 * 120.00276 * 179.97438 * 10 8 2 13 13 C 1.39264 * 120.00302 * 174.43101 * 12 10 8 14 14 C 1.39470 * 119.84029 * 335.09834 * 13 12 10 15 15 C 1.36374 * 120.18080 * 179.97438 * 14 13 12 16 16 C 1.40893 * 119.84658 * 359.97438 * 15 14 13 17 17 C 1.41156 * 120.15344 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00223 * 34.92432 * 17 16 15 19 19 C 1.39902 * 119.99792 * 214.92490 * 17 16 15 20 20 N 1.30881 * 120.00015 * 355.19141 * 19 17 16 21 21 Si 1.86799 * 120.00110 * 175.19337 * 19 17 16 22 22 H 1.48498 * 109.46924 * 60.00015 * 21 19 17 23 23 H 1.48506 * 109.47069 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47065 * 299.99939 * 21 19 17 25 25 C 1.40842 * 119.68646 * 359.97438 * 16 15 14 26 26 C 1.36478 * 119.81640 * 359.74751 * 25 16 15 27 27 Cl 1.73593 * 119.92414 * 180.27357 * 26 25 16 28 28 H 1.08999 * 109.47332 * 299.99796 * 1 2 3 29 29 H 1.08997 * 109.47160 * 59.99936 * 1 2 3 30 30 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47645 * 58.81638 * 5 4 2 32 32 H 1.08996 * 109.47900 * 178.85348 * 5 4 2 33 33 H 1.09004 * 109.52043 * 177.51601 * 6 5 4 34 34 H 1.08997 * 109.51928 * 297.63552 * 6 5 4 35 35 H 1.08998 * 109.54846 * 62.88204 * 7 6 5 36 36 H 1.08994 * 109.54533 * 183.06254 * 7 6 5 37 37 H 0.97000 * 119.99730 * 354.44140 * 12 10 8 38 38 H 1.07997 * 119.90604 * 359.97438 * 14 13 12 39 39 H 1.07995 * 120.07922 * 179.97438 * 15 14 13 40 40 H 0.96995 * 120.00086 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.08592 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0065 -0.6742 1.1664 5 6 3.4307 -0.7090 1.2792 6 6 4.0178 -1.4597 0.0811 7 6 3.5714 -0.7706 -1.2120 8 6 2.0408 -0.7222 -1.2496 9 1 1.6447 -1.7375 -1.2710 10 6 1.5905 0.0214 -2.4805 11 8 0.9258 1.0298 -2.3705 12 7 1.9263 -0.4342 -3.7036 13 6 1.4152 0.1845 -4.8417 14 6 0.2124 0.8869 -4.7689 15 6 -0.2942 1.4958 -5.8790 16 6 0.4006 1.4147 -7.1020 17 6 -0.1182 2.0421 -8.2551 18 1 -0.6497 2.9782 -8.1678 19 6 0.0563 1.4513 -9.5112 20 7 0.7801 0.3673 -9.6297 21 14 -0.7439 2.2096 -11.0193 22 1 -0.2422 3.5953 -11.2018 23 1 -0.4086 1.3992 -12.2178 24 1 -2.2174 2.2366 -10.8370 25 6 1.6152 0.7048 -7.1685 26 6 2.1130 0.1053 -6.0480 27 17 3.6133 -0.7644 -6.1251 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8190 0.3093 1.2959 32 1 3.7099 -1.2199 2.2007 33 1 5.1061 -1.4493 0.1424 34 1 3.6626 -2.4902 0.0873 35 1 3.9690 0.2438 -1.2407 36 1 3.9409 -1.3315 -2.0704 37 1 2.5240 -1.1931 -3.7912 38 1 -0.3191 0.9487 -3.8308 39 1 -1.2259 2.0389 -5.8208 40 1 0.9007 -0.0425 -10.5005 41 1 2.1534 0.6389 -8.1025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334533657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:24 Heat of formation + Delta-G solvation = -95.344440 kcal Electronic energy + Delta-G solvation = -25047.691197 eV Core-core repulsion = 21337.912478 eV Total energy + Delta-G solvation = -3709.778720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85839 -40.19017 -39.01042 -37.26168 -36.22999 -35.12590 -34.44123 -33.57819 -31.32040 -30.94625 -29.01028 -27.02763 -25.70174 -23.88815 -23.34811 -22.62423 -21.80502 -20.88629 -19.46200 -18.65791 -18.13627 -17.27486 -16.99512 -16.59424 -16.27682 -15.98321 -15.84632 -15.61494 -15.21212 -14.81299 -14.65514 -14.44932 -14.17571 -13.91635 -13.54396 -13.43801 -13.22725 -13.15335 -13.02809 -12.79551 -12.68978 -12.38069 -12.19084 -12.06200 -11.99562 -11.93502 -11.87348 -11.58810 -11.34193 -11.22837 -10.82347 -10.58064 -10.33806 -9.41594 -8.79042 -8.55153 -6.37968 0.57666 0.94076 1.36523 1.41327 1.44281 1.52578 1.72705 2.13890 2.23173 2.72588 2.86093 3.49116 3.53433 3.65991 3.69960 3.97583 4.11795 4.14797 4.35366 4.37622 4.47011 4.59318 4.69058 4.77304 4.80054 4.85351 4.90122 4.94639 4.98978 5.04659 5.08786 5.20507 5.28331 5.29227 5.36508 5.46621 5.68946 5.83413 6.02383 6.22432 6.24412 6.51049 6.57468 6.85560 6.89970 7.23078 8.37232 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024642 B = 0.003169 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.007430 B = 8833.706755 C = 9812.297277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.114 3.886 3 H 0.053 0.947 4 O -0.389 6.389 5 C 0.048 3.952 6 C -0.146 4.146 7 C -0.117 4.117 8 C -0.126 4.126 9 H 0.120 0.880 10 C 0.511 3.489 11 O -0.554 6.554 12 N -0.642 5.642 13 C 0.030 3.970 14 C -0.093 4.093 15 C -0.208 4.208 16 C 0.077 3.923 17 C -0.491 4.491 18 H 0.079 0.921 19 C 0.031 3.969 20 N -0.835 5.835 21 Si 0.988 3.012 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.262 1.262 25 C -0.151 4.151 26 C -0.034 4.034 27 Cl -0.087 7.087 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.287 0.713 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -5.768 14.387 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.071 0.929 4 O -0.309 6.309 5 C -0.028 4.028 6 C -0.183 4.183 7 C -0.155 4.155 8 C -0.148 4.148 9 H 0.138 0.862 10 C 0.300 3.700 11 O -0.433 6.433 12 N -0.286 5.286 13 C -0.065 4.065 14 C -0.113 4.113 15 C -0.228 4.228 16 C 0.074 3.926 17 C -0.521 4.521 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.462 5.462 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.187 1.187 25 C -0.172 4.172 26 C -0.063 4.063 27 Cl -0.059 7.059 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.011 -5.422 14.468 16.579 hybrid contribution 0.204 0.009 -1.252 1.269 sum 6.215 -5.413 13.216 15.575 Atomic orbital electron populations 1.21917 0.92724 1.02847 1.03310 1.21653 0.95535 0.94111 0.83155 0.92928 1.87942 1.22675 1.78025 1.42210 1.22860 0.79886 1.00353 0.99670 1.22169 1.02598 1.00424 0.93129 1.21670 0.91238 1.02183 1.00425 1.21986 0.99309 1.01639 0.91861 0.86239 1.20970 0.79663 0.84695 0.84666 1.90604 1.40004 1.26108 1.86599 1.43021 1.48293 1.33497 1.03816 1.17049 0.96296 1.07423 0.85706 1.20660 0.93826 0.98110 0.98670 1.21085 1.00990 1.06982 0.93753 1.17898 0.90134 0.91639 0.92954 1.19709 1.32701 1.08052 0.91666 0.90266 1.26739 0.94052 0.94457 1.03009 1.69797 1.31619 1.17530 1.27226 0.85147 0.79204 0.78975 0.75760 1.18445 1.19364 1.18679 1.21108 0.96930 1.02451 0.96665 1.20423 0.88698 1.02151 0.94988 1.98245 1.33172 1.75861 1.98600 0.91521 0.90673 0.91732 0.93003 0.86626 0.88273 0.90008 0.91842 0.89734 0.75089 0.85060 0.87314 0.90219 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.28 71.98 0.67 -3.10 16 2 C 0.11 2.75 2.40 30.63 0.07 2.83 16 3 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 4 O -0.39 -8.53 10.41 -148.98 -1.55 -10.08 16 5 C 0.05 0.74 6.84 72.01 0.49 1.23 16 6 C -0.15 -1.92 6.14 30.68 0.19 -1.73 16 7 C -0.12 -2.12 5.18 30.71 0.16 -1.96 16 8 C -0.13 -2.89 2.24 -11.45 -0.03 -2.92 16 9 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 10 C 0.51 16.14 6.66 87.66 0.58 16.73 16 11 O -0.55 -21.23 10.95 -3.03 -0.03 -21.27 16 12 N -0.64 -21.40 5.09 -303.04 -1.54 -22.94 16 13 C 0.03 1.29 6.44 38.58 0.25 1.53 16 14 C -0.09 -4.22 8.64 22.13 0.19 -4.03 16 15 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 16 C 0.08 4.05 5.55 -21.28 -0.12 3.94 16 17 C -0.49 -25.81 9.02 23.39 0.21 -25.60 16 18 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 19 C 0.03 1.50 5.42 85.24 0.46 1.97 16 20 N -0.83 -42.51 10.59 21.82 0.23 -42.28 16 21 Si 0.99 37.70 29.56 68.60 2.03 39.73 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 C -0.15 -7.71 8.38 22.50 0.19 -7.52 16 26 C -0.03 -1.52 6.30 22.18 0.14 -1.38 16 27 Cl -0.09 -3.17 27.75 -2.72 -0.08 -3.25 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 2.23 5.74 -2.39 -0.01 2.21 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.37 7.57 -2.39 -0.02 1.35 16 37 H 0.41 11.53 7.10 -92.71 -0.66 10.87 16 38 H 0.13 5.80 5.76 -2.91 -0.02 5.78 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 40 H 0.29 13.35 8.30 -92.71 -0.77 12.59 16 41 H 0.13 6.88 6.13 -2.91 -0.02 6.86 16 Total: -1.00 -59.81 343.59 3.15 -56.66 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.41 Total: 33.43 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.68 Total: -30.01 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -1.31 Total: -65.22 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.58 Total: -31.34 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.08 Total: -3.25 kcal Total: -59.81 3.15 -56.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334533657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.680 kcal (2) G-P(sol) polarization free energy of solvation -59.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds