Wall clock time and date at job start Tue Mar 31 2020 13:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 N 1.46902 * 109.46871 * 120.00339 * 2 1 3 5 5 C 1.46900 * 110.99439 * 274.99544 * 4 2 1 6 6 C 1.53006 * 109.46703 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46837 * 180.02562 * 6 5 4 8 8 S 1.80998 * 109.47030 * 180.02562 * 7 6 5 9 9 C 1.76204 * 100.00297 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99987 * 180.02562 * 9 8 7 12 12 N 1.31625 * 120.00130 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99746 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47205 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47252 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47190 * 239.99962 * 13 11 9 17 17 C 1.50699 * 109.47137 * 240.00088 * 2 1 3 18 18 C 1.34008 * 124.93068 * 99.99588 * 17 2 1 19 19 C 1.46778 * 106.19195 * 180.02562 * 18 17 2 20 20 C 1.39469 * 134.35126 * 180.02562 * 19 18 17 21 21 C 1.36714 * 119.76123 * 179.97438 * 20 19 18 22 22 C 1.38740 * 120.44102 * 0.02562 * 21 20 19 23 23 C 1.38045 * 120.65278 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.11240 * 179.97438 * 23 22 21 25 25 C 1.39136 * 119.77270 * 0.02562 * 23 22 21 26 26 O 1.34441 * 124.92886 * 280.02764 * 17 2 1 27 27 H 1.09000 * 109.47215 * 60.00050 * 1 2 3 28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47008 * 299.99524 * 1 2 3 30 30 H 1.00902 * 110.99497 * 151.05280 * 4 2 1 31 31 H 1.08994 * 109.47725 * 300.00081 * 5 4 2 32 32 H 1.09002 * 109.46978 * 60.00526 * 5 4 2 33 33 H 1.08989 * 109.47429 * 300.00549 * 6 5 4 34 34 H 1.09002 * 109.47072 * 60.00464 * 6 5 4 35 35 H 1.09002 * 109.47824 * 300.00278 * 7 6 5 36 36 H 1.08995 * 109.47290 * 60.00369 * 7 6 5 37 37 H 0.97001 * 119.99956 * 180.02562 * 12 11 9 38 38 H 1.08000 * 126.90035 * 0.04712 * 18 17 2 39 39 H 1.07994 * 120.11774 * 359.97438 * 20 19 18 40 40 H 1.08006 * 119.77991 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.67851 * 180.27314 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5330 3.5741 7 6 2.6611 0.4200 4.7693 8 16 3.2695 -0.4735 6.2211 9 6 3.2434 0.8244 7.4125 10 1 2.9133 1.8124 7.1274 11 6 3.6471 0.5770 8.7172 12 7 4.0489 -0.6273 9.0647 13 14 3.6187 1.9528 9.9804 14 1 3.1294 3.2011 9.3419 15 1 2.7143 1.5804 11.0978 16 1 4.9905 2.1710 10.5055 17 6 2.0324 -0.7104 -1.2305 18 6 2.4680 -0.1033 -2.3429 19 6 2.8535 -1.1743 -3.2695 20 6 3.3715 -1.2039 -4.5641 21 6 3.6292 -2.4048 -5.1646 22 6 3.3783 -3.5937 -4.4950 23 6 2.8657 -3.5850 -3.2133 24 9 2.6250 -4.7493 -2.5716 25 6 2.5968 -2.3731 -2.5850 26 8 2.1080 -2.0452 -1.3717 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6163 2.5525 33 1 1.9203 -1.3568 3.8029 34 1 3.5917 -0.9264 3.3682 35 1 3.3369 1.2441 4.5409 36 1 1.6655 0.8130 4.9751 37 1 4.3307 -0.8003 9.9766 38 1 2.5243 0.9604 -2.5215 39 1 3.5684 -0.2816 -5.0902 40 1 4.0307 -2.4281 -6.1670 41 1 3.5905 -4.5354 -4.9795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355770258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:38 Heat of formation + Delta-G solvation = -30.536728 kcal Electronic energy + Delta-G solvation = -23164.210834 eV Core-core repulsion = 19471.658883 eV Total energy + Delta-G solvation = -3692.551951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.21585 -42.87567 -38.40436 -37.33206 -33.98619 -32.69876 -32.41835 -30.56529 -30.22115 -28.89937 -25.85467 -25.21491 -23.62643 -23.35576 -21.83429 -21.19538 -20.90844 -18.20356 -17.85196 -17.42878 -16.85531 -16.75117 -16.08886 -15.57211 -15.52451 -15.39851 -14.90267 -14.79926 -14.31770 -13.90333 -13.83474 -13.62352 -13.33635 -13.05560 -12.59907 -12.51255 -12.36848 -12.31072 -12.26889 -11.88728 -11.61706 -11.51844 -11.31762 -11.08128 -10.79112 -10.62264 -10.44049 -10.37198 -9.53731 -9.08747 -9.06188 -8.64300 -8.52300 -8.28627 -6.51904 -6.22209 -3.92367 0.33037 0.79188 1.83965 2.15670 3.12494 3.21132 3.21902 3.30074 3.51281 3.68146 3.76307 4.04209 4.23033 4.28927 4.47711 4.61505 4.70297 4.73549 4.88489 4.96698 5.13684 5.17621 5.23482 5.32720 5.35174 5.39778 5.51319 5.52877 5.58489 5.65816 5.70676 5.86766 5.88716 5.94573 5.98846 6.07536 6.15937 6.31889 6.58206 6.64419 6.75274 6.90472 7.18033 7.61245 8.37335 9.24051 10.86012 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.001887 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.397365 B =14837.209782 C =15338.396889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.159 3.841 3 H 0.080 0.920 4 N -0.682 5.682 5 C 0.062 3.938 6 C -0.096 4.096 7 C -0.112 4.112 8 S -0.132 6.132 9 C -0.516 4.516 10 H 0.073 0.927 11 C 0.070 3.930 12 N -0.869 5.869 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.053 3.947 18 C -0.209 4.209 19 C -0.100 4.100 20 C -0.083 4.083 21 C -0.109 4.109 22 C -0.133 4.133 23 C 0.118 3.882 24 F -0.130 7.130 25 C 0.015 3.985 26 O -0.166 6.166 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.348 0.652 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.267 0.733 38 H 0.163 0.837 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -0.125 -30.747 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 H 0.097 0.903 4 N -0.315 5.315 5 C -0.068 4.068 6 C -0.135 4.135 7 C -0.261 4.261 8 S 0.096 5.904 9 C -0.664 4.664 10 H 0.091 0.909 11 C -0.139 4.139 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.004 3.996 18 C -0.229 4.229 19 C -0.101 4.101 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.152 4.152 23 C 0.098 3.902 24 F -0.109 7.109 25 C -0.034 4.034 26 O -0.067 6.067 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.181 0.819 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.678 -1.818 -30.062 30.340 hybrid contribution 0.441 2.511 0.526 2.603 sum -3.237 0.693 -29.536 29.720 Atomic orbital electron populations 1.21866 0.92370 1.03545 1.02214 1.20327 0.96962 0.94285 0.83506 0.90258 1.60577 1.34300 1.33301 1.03278 1.22143 1.01058 0.93543 0.90054 1.21242 1.01773 0.98429 0.92026 1.23214 1.02866 1.01114 0.98939 1.84678 1.85317 1.18830 1.01580 1.22734 1.50846 0.96774 0.96057 0.90923 1.25025 0.94660 0.96431 0.97775 1.70033 1.41399 1.20029 1.19018 0.86110 0.77921 0.81049 0.80415 1.19628 1.20556 1.20596 1.22631 0.99133 0.80171 0.97696 1.22246 1.08100 0.99599 0.92933 1.19796 1.02789 0.91702 0.95783 1.20353 0.98265 0.98917 0.92550 1.20622 1.00629 0.90930 1.00533 1.20952 1.01505 1.00704 0.92019 1.16553 1.04409 0.77713 0.91496 1.91547 1.92259 1.45714 1.81360 1.19599 1.03172 0.94692 0.85926 1.84118 1.68038 1.23709 1.30795 0.92071 0.91223 0.91033 0.83356 0.94991 0.90620 0.90546 0.91743 0.92328 0.92054 0.92359 0.81932 0.84776 0.84264 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.40 37.16 0.35 -0.94 16 2 C 0.16 1.54 3.05 -68.86 -0.21 1.33 16 3 H 0.08 0.65 7.78 -51.93 -0.40 0.25 16 4 N -0.68 -8.10 6.28 -107.95 -0.68 -8.77 16 5 C 0.06 0.79 5.48 -3.82 -0.02 0.77 16 6 C -0.10 -1.56 5.48 -26.73 -0.15 -1.70 16 7 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 8 S -0.13 -3.50 21.44 -107.50 -2.30 -5.80 16 9 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 10 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 11 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 12 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 13 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.05 0.55 5.73 -35.80 -0.21 0.35 16 18 C -0.21 -1.89 10.99 -37.62 -0.41 -2.31 16 19 C -0.10 -0.97 6.40 -105.17 -0.67 -1.64 16 20 C -0.08 -0.59 10.05 -39.67 -0.40 -0.99 16 21 C -0.11 -0.67 9.98 -39.95 -0.40 -1.07 16 22 C -0.13 -0.99 9.99 -39.47 -0.39 -1.39 16 23 C 0.12 1.26 7.32 -39.32 -0.29 0.97 16 24 F -0.13 -1.57 17.27 2.25 0.04 -1.53 16 25 C 0.01 0.17 7.40 -38.43 -0.28 -0.11 16 26 O -0.17 -2.13 10.56 3.81 0.04 -2.09 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.63 7.45 -51.93 -0.39 0.25 16 30 H 0.35 4.19 8.35 -39.29 -0.33 3.86 16 31 H 0.03 0.38 8.05 -51.93 -0.42 -0.04 16 32 H 0.08 0.93 7.44 -51.93 -0.39 0.54 16 33 H 0.08 1.31 8.14 -51.94 -0.42 0.89 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.15 8.14 -51.91 -0.42 0.73 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.80 367.84 -10.02 -42.82 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.70 Total: 0.12 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.67 Total: -21.45 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.06 Total: -34.22 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.80 -10.02 -42.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355770258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds