Wall clock time and date at job start Tue Mar 31 2020 13:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 N 1.46902 * 109.46871 * 120.00339 * 2 1 3 5 5 C 1.46900 * 110.99439 * 274.99544 * 4 2 1 6 6 C 1.53006 * 109.46703 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46837 * 180.02562 * 6 5 4 8 8 S 1.80998 * 109.47030 * 180.02562 * 7 6 5 9 9 C 1.76204 * 100.00297 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99987 * 180.02562 * 9 8 7 12 12 N 1.31625 * 120.00130 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99746 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47205 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47252 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47190 * 239.99962 * 13 11 9 17 17 C 1.50699 * 109.47137 * 240.00088 * 2 1 3 18 18 C 1.34008 * 124.93068 * 99.99588 * 17 2 1 19 19 C 1.46778 * 106.19195 * 180.02562 * 18 17 2 20 20 C 1.39469 * 134.35126 * 180.02562 * 19 18 17 21 21 C 1.36714 * 119.76123 * 179.97438 * 20 19 18 22 22 C 1.38740 * 120.44102 * 0.02562 * 21 20 19 23 23 C 1.38045 * 120.65278 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.11240 * 179.97438 * 23 22 21 25 25 C 1.39136 * 119.77270 * 0.02562 * 23 22 21 26 26 O 1.34441 * 124.92886 * 280.02764 * 17 2 1 27 27 H 1.09000 * 109.47215 * 60.00050 * 1 2 3 28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47008 * 299.99524 * 1 2 3 30 30 H 1.00902 * 110.99497 * 151.05280 * 4 2 1 31 31 H 1.08994 * 109.47725 * 300.00081 * 5 4 2 32 32 H 1.09002 * 109.46978 * 60.00526 * 5 4 2 33 33 H 1.08989 * 109.47429 * 300.00549 * 6 5 4 34 34 H 1.09002 * 109.47072 * 60.00464 * 6 5 4 35 35 H 1.09002 * 109.47824 * 300.00278 * 7 6 5 36 36 H 1.08995 * 109.47290 * 60.00369 * 7 6 5 37 37 H 0.97001 * 119.99956 * 180.02562 * 12 11 9 38 38 H 1.08000 * 126.90035 * 0.04712 * 18 17 2 39 39 H 1.07994 * 120.11774 * 359.97438 * 20 19 18 40 40 H 1.08006 * 119.77991 * 180.02562 * 21 20 19 41 41 H 1.08004 * 119.67851 * 180.27314 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5330 3.5741 7 6 2.6611 0.4200 4.7693 8 16 3.2695 -0.4735 6.2211 9 6 3.2434 0.8244 7.4125 10 1 2.9133 1.8124 7.1274 11 6 3.6471 0.5770 8.7172 12 7 4.0489 -0.6273 9.0647 13 14 3.6187 1.9528 9.9804 14 1 3.1294 3.2011 9.3419 15 1 2.7143 1.5804 11.0978 16 1 4.9905 2.1710 10.5055 17 6 2.0324 -0.7104 -1.2305 18 6 2.4680 -0.1033 -2.3429 19 6 2.8535 -1.1743 -3.2695 20 6 3.3715 -1.2039 -4.5641 21 6 3.6292 -2.4048 -5.1646 22 6 3.3783 -3.5937 -4.4950 23 6 2.8657 -3.5850 -3.2133 24 9 2.6250 -4.7493 -2.5716 25 6 2.5968 -2.3731 -2.5850 26 8 2.1080 -2.0452 -1.3717 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6163 2.5525 33 1 1.9203 -1.3568 3.8029 34 1 3.5917 -0.9264 3.3682 35 1 3.3369 1.2441 4.5409 36 1 1.6655 0.8130 4.9751 37 1 4.3307 -0.8003 9.9766 38 1 2.5243 0.9604 -2.5215 39 1 3.5684 -0.2816 -5.0902 40 1 4.0307 -2.4281 -6.1670 41 1 3.5905 -4.5354 -4.9795 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355770258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:38 Heat of formation + Delta-G solvation = -49.882282 kcal Electronic energy + Delta-G solvation = -23165.049720 eV Core-core repulsion = 19471.658883 eV Total energy + Delta-G solvation = -3693.390837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01938 -43.58874 -39.06305 -38.21233 -35.08458 -34.60081 -33.47855 -31.30369 -31.08344 -29.60247 -27.86381 -26.47716 -24.48470 -24.03172 -22.67078 -22.27343 -21.71812 -19.57597 -18.92191 -18.52090 -17.63733 -17.55457 -16.90459 -16.84332 -16.58606 -16.39957 -16.26923 -15.88579 -15.66995 -15.07884 -14.89687 -14.51305 -14.25252 -14.01330 -13.78531 -13.59463 -13.35853 -13.13818 -13.04526 -12.95030 -12.85765 -12.82356 -12.54944 -12.47958 -12.33014 -12.25023 -11.76850 -11.38384 -11.16050 -11.04639 -10.31512 -9.75853 -9.53556 -9.17642 -8.67782 -8.37872 -6.14546 -0.31077 0.15298 1.15592 1.31210 1.38261 1.48799 1.49537 1.74226 2.27868 2.52608 2.90698 2.96350 3.02790 3.24064 3.33700 3.71995 3.85557 3.95250 4.01799 4.05622 4.09951 4.22199 4.29909 4.33816 4.36126 4.50917 4.60218 4.67913 4.71250 4.76296 4.84266 4.89584 4.99954 5.09226 5.16726 5.26768 5.29437 5.31721 5.35443 5.39452 5.58903 5.89328 6.06782 6.17882 6.24941 7.04203 8.71857 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.001887 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.397365 B =14837.209782 C =15338.396889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.162 3.838 3 H 0.103 0.897 4 N -0.695 5.695 5 C 0.076 3.924 6 C -0.086 4.086 7 C -0.085 4.085 8 S -0.206 6.206 9 C -0.536 4.536 10 H 0.075 0.925 11 C 0.012 3.988 12 N -0.909 5.909 13 Si 0.997 3.003 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.272 1.272 17 C 0.028 3.972 18 C -0.196 4.196 19 C -0.116 4.116 20 C -0.077 4.077 21 C -0.102 4.102 22 C -0.120 4.120 23 C 0.077 3.923 24 F -0.150 7.150 25 C -0.018 4.018 26 O -0.199 6.199 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.344 0.656 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.271 0.729 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.180 0.820 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 2.396 -33.188 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.053 3.947 3 H 0.120 0.880 4 N -0.327 5.327 5 C -0.054 4.054 6 C -0.125 4.125 7 C -0.235 4.235 8 S 0.023 5.977 9 C -0.683 4.683 10 H 0.093 0.907 11 C -0.193 4.193 12 N -0.545 5.545 13 Si 0.819 3.181 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.020 4.020 18 C -0.215 4.215 19 C -0.118 4.118 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.139 4.139 23 C 0.058 3.942 24 F -0.129 7.129 25 C -0.066 4.066 26 O -0.100 6.100 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.163 0.837 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.210 0.790 39 H 0.184 0.816 40 H 0.197 0.803 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.466 0.704 -32.523 32.715 hybrid contribution 0.387 1.674 1.089 2.034 sum -3.079 2.378 -31.435 31.674 Atomic orbital electron populations 1.21854 0.92113 1.02460 1.03262 1.20411 0.97089 0.94965 0.82256 0.87959 1.60515 1.34257 1.33758 1.04165 1.21929 1.01572 0.93260 0.88681 1.21126 1.01503 0.97621 0.92245 1.23130 1.02566 1.01053 0.96718 1.84744 1.86301 1.21364 1.05297 1.23078 1.51178 0.97067 0.97023 0.90707 1.26121 0.93845 0.99251 1.00070 1.70173 1.42196 1.22375 1.19778 0.84929 0.78320 0.77649 0.77229 1.18449 1.19734 1.19710 1.22833 1.00813 0.79669 0.98676 1.22623 1.06172 1.00745 0.91936 1.20161 1.03582 0.91023 0.96991 1.20827 0.96486 1.00740 0.91416 1.21128 0.99190 0.89807 1.01852 1.21391 0.99288 1.02653 0.90553 1.17092 1.07024 0.77090 0.93010 1.91483 1.92764 1.46629 1.81990 1.20052 1.04372 0.96009 0.86157 1.84056 1.69007 1.25122 1.31856 0.90180 0.93367 0.90750 0.83734 0.93518 0.89780 0.91895 0.92214 0.91628 0.91581 0.92001 0.79006 0.81636 0.80285 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.40 71.98 0.68 -1.72 16 2 C 0.16 2.97 3.05 44.17 0.13 3.10 16 3 H 0.10 1.41 7.78 -2.39 -0.02 1.39 16 4 N -0.69 -16.29 6.28 -495.43 -3.11 -19.40 16 5 C 0.08 1.83 5.48 86.31 0.47 2.30 16 6 C -0.09 -2.79 5.48 30.60 0.17 -2.62 16 7 C -0.09 -3.41 5.67 71.98 0.41 -3.00 16 8 S -0.21 -11.17 21.44 -56.49 -1.21 -12.38 16 9 C -0.54 -31.25 9.50 67.95 0.65 -30.61 16 10 H 0.07 4.18 7.80 -2.91 -0.02 4.15 16 11 C 0.01 0.68 5.49 84.86 0.47 1.14 16 12 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 13 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 14 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 C 0.03 0.58 5.73 24.72 0.14 0.72 16 18 C -0.20 -3.20 10.99 23.54 0.26 -2.94 16 19 C -0.12 -2.12 6.40 -20.22 -0.13 -2.25 16 20 C -0.08 -0.86 10.05 22.21 0.22 -0.64 16 21 C -0.10 -0.90 9.98 22.03 0.22 -0.68 16 22 C -0.12 -1.61 9.99 22.34 0.22 -1.38 16 23 C 0.08 1.70 7.32 22.44 0.16 1.87 16 24 F -0.15 -3.91 17.27 44.97 0.78 -3.13 16 25 C -0.02 -0.43 7.40 23.01 0.17 -0.26 16 26 O -0.20 -5.38 10.56 -9.27 -0.10 -5.47 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 30 H 0.34 8.45 8.35 -89.69 -0.75 7.70 16 31 H 0.05 1.01 8.05 -2.39 -0.02 0.99 16 32 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 41 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -74.72 367.84 3.21 -71.51 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.29 Total: 15.00 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.24 Total: -36.98 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.83 Total: -74.82 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.10 Total: -5.47 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -11.17 SS G_CDS: -1.21 Total: -12.38 kcal Total: -74.72 3.21 -71.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355770258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.631 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds