Wall clock time and date at job start Tue Mar 31 2020 13:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.42227 * 2 1 4 4 C 1.54479 * 110.37286 * 237.69445 * 2 1 3 5 5 C 1.54505 * 104.06508 * 217.18957 * 4 2 1 6 6 H 1.09003 * 110.51086 * 241.21907 * 5 4 2 7 7 C 1.52996 * 110.51520 * 118.64558 * 5 4 2 8 8 C 1.54479 * 104.06220 * 359.97438 * 5 4 2 9 9 H 1.08995 * 110.37458 * 265.15061 * 8 5 4 10 10 C 1.50702 * 110.37334 * 142.91997 * 8 5 4 11 11 O 1.21279 * 120.00099 * 245.00317 * 10 8 5 12 12 N 1.34778 * 119.99786 * 65.00392 * 10 8 5 13 13 C 1.39270 * 119.99947 * 175.75522 * 12 10 8 14 14 C 1.39468 * 119.83552 * 34.72419 * 13 12 10 15 15 C 1.36377 * 120.17293 * 179.71671 * 14 13 12 16 16 C 1.40884 * 119.85369 * 0.53326 * 15 14 13 17 17 C 1.41148 * 120.16364 * 179.76413 * 16 15 14 18 18 H 1.08003 * 120.00006 * 34.74683 * 17 16 15 19 19 C 1.39899 * 120.00322 * 214.75568 * 17 16 15 20 20 N 1.30880 * 119.99947 * 355.58339 * 19 17 16 21 21 Si 1.86794 * 120.00253 * 175.58590 * 19 17 16 22 22 H 1.48504 * 109.47039 * 60.00026 * 21 19 17 23 23 H 1.48498 * 109.47209 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47095 * 299.99961 * 21 19 17 25 25 C 1.40846 * 119.67998 * 359.74229 * 16 15 14 26 26 C 1.36477 * 119.82061 * 359.97438 * 25 16 15 27 27 Cl 1.73598 * 119.92792 * 180.02562 * 26 25 16 28 28 O 1.44424 * 110.37643 * 122.31112 * 2 1 3 29 29 H 1.09002 * 109.46957 * 182.30782 * 1 2 3 30 30 H 1.08997 * 109.47088 * 302.30846 * 1 2 3 31 31 H 1.09006 * 109.47404 * 62.30770 * 1 2 3 32 32 H 1.09006 * 110.51285 * 98.54059 * 4 2 1 33 33 H 1.08995 * 110.51387 * 335.83488 * 4 2 1 34 34 H 1.08993 * 109.47477 * 61.44848 * 7 5 4 35 35 H 1.08994 * 109.47447 * 181.46084 * 7 5 4 36 36 H 1.09011 * 109.46708 * 301.45662 * 7 5 4 37 37 H 0.97004 * 120.00197 * 355.75258 * 12 10 8 38 38 H 1.08003 * 119.91331 * 0.02562 * 14 13 12 39 39 H 1.08010 * 120.07041 * 180.27017 * 15 14 13 40 40 H 0.96997 * 120.00292 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.08900 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7739 -1.2240 5 6 3.3177 -1.5056 -0.6861 6 1 4.2105 -1.1789 -1.2193 7 6 3.1462 -3.0210 -0.8087 8 6 3.3877 -1.0867 0.7992 9 1 4.0529 -0.2320 0.9214 10 6 3.8560 -2.2403 1.6482 11 8 3.1121 -2.7274 2.4730 12 7 5.1015 -2.7308 1.4910 13 6 5.5652 -3.7373 2.3345 14 6 4.6838 -4.7122 2.8013 15 6 5.1317 -5.7042 3.6230 16 6 6.4861 -5.7368 4.0094 17 6 6.9556 -6.7577 4.8636 18 1 6.5429 -7.7533 4.7928 19 6 7.9553 -6.4800 5.8020 20 7 8.5162 -5.2978 5.8302 21 14 8.4897 -7.7965 7.0147 22 1 9.0116 -8.9715 6.2715 23 1 9.5558 -7.2549 7.8952 24 1 7.3270 -8.2098 7.8409 25 6 7.3696 -4.7459 3.5390 26 6 6.9085 -3.7625 2.7126 27 17 7.9951 -2.5401 2.1305 28 8 2.0328 -0.7237 1.1442 29 1 -0.3633 -1.0269 0.0414 30 1 -0.3633 0.5492 0.8685 31 1 -0.3634 0.4776 -0.9100 32 1 2.3429 -0.0838 -2.0216 33 1 1.3276 -1.4918 -1.5774 34 1 3.0296 -3.2897 -1.8585 35 1 4.0252 -3.5203 -0.4012 36 1 2.2614 -3.3326 -0.2534 37 1 5.6749 -2.3827 0.7903 38 1 3.6449 -4.6842 2.5074 39 1 4.4486 -6.4609 3.9801 40 1 9.2096 -5.1054 6.4806 41 1 8.4092 -4.7647 3.8307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452646627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:01 Heat of formation + Delta-G solvation = -73.747593 kcal Electronic energy + Delta-G solvation = -25084.666937 eV Core-core repulsion = 21375.824727 eV Total energy + Delta-G solvation = -3708.842210 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63227 -38.94792 -37.30377 -35.53949 -34.56296 -33.70738 -32.87898 -32.19796 -29.46917 -29.18991 -27.11421 -26.98286 -24.81114 -22.14869 -21.43683 -21.26424 -20.72505 -19.43354 -17.60187 -17.19077 -17.02667 -16.30866 -15.67908 -15.28952 -14.94572 -14.52376 -14.27402 -14.10931 -13.67131 -13.30117 -13.00020 -12.77979 -12.68200 -12.57243 -12.45775 -12.29954 -12.26367 -11.68483 -11.51746 -11.41631 -11.28082 -11.13438 -10.94901 -10.93518 -10.84633 -10.58421 -10.35237 -10.02535 -9.86168 -9.78087 -9.48724 -9.12453 -8.94297 -7.56627 -7.03244 -6.73223 -4.48282 2.35183 2.82166 2.96279 3.05201 3.06577 3.09327 3.14344 3.36290 3.90239 4.01027 4.27845 4.51794 4.54986 4.63515 4.83093 4.92160 5.13630 5.17207 5.23418 5.37268 5.44551 5.44644 5.53626 5.65166 5.75197 5.81323 5.95238 5.96837 6.17259 6.22076 6.50114 6.59729 6.72561 6.86639 6.98554 7.13642 7.30692 7.56053 7.65057 7.85433 8.05887 8.11535 8.41393 8.64802 8.77083 8.80013 10.17064 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.003151 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.581603 B = 8883.194949 C = 9456.683425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.116 4.116 6 H 0.091 0.909 7 C -0.156 4.156 8 C 0.061 3.939 9 H 0.092 0.908 10 C 0.514 3.486 11 O -0.509 6.509 12 N -0.648 5.648 13 C 0.013 3.987 14 C -0.074 4.074 15 C -0.202 4.202 16 C 0.109 3.891 17 C -0.455 4.455 18 H 0.081 0.919 19 C 0.069 3.931 20 N -0.804 5.804 21 Si 0.919 3.081 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.136 4.136 26 C -0.021 4.021 27 Cl -0.120 7.120 28 O -0.338 6.338 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.282 0.718 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 8.558 -13.080 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.087 0.913 4 C -0.183 4.183 5 C -0.135 4.135 6 H 0.109 0.891 7 C -0.214 4.214 8 C 0.000 4.000 9 H 0.109 0.891 10 C 0.299 3.701 11 O -0.383 6.383 12 N -0.294 5.294 13 C -0.080 4.080 14 C -0.094 4.094 15 C -0.222 4.222 16 C 0.106 3.894 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.430 5.430 21 Si 0.744 3.256 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.156 4.156 26 C -0.049 4.049 27 Cl -0.092 7.092 28 O -0.257 6.257 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.994 8.434 -12.191 16.391 hybrid contribution 0.853 0.042 0.101 0.860 sum -6.141 8.475 -12.089 15.991 Atomic orbital electron populations 1.21781 0.92985 1.03210 1.02268 1.23049 0.95636 0.95361 0.85225 0.91279 1.23113 0.97301 0.99667 0.98203 1.22493 0.99302 0.97652 0.94020 0.89118 1.22020 1.03646 0.93556 1.02153 1.22920 0.86933 0.96579 0.93609 0.89076 1.19952 0.82412 0.83920 0.83796 1.90703 1.53755 1.59010 1.34856 1.42875 1.14783 1.37758 1.33966 1.16873 0.91685 0.94141 1.05319 1.20396 0.98162 0.92679 0.98188 1.20903 0.95500 1.00756 1.05002 1.17599 0.89921 0.92146 0.89768 1.19477 1.16998 0.97343 1.14719 0.90124 1.25934 0.94383 0.96189 0.98231 1.69727 1.20495 1.20736 1.32036 0.86184 0.78846 0.80761 0.79853 1.18925 1.20315 1.18952 1.21204 1.01862 0.95523 0.97061 1.20419 0.88512 0.93729 1.02248 1.98249 1.65577 1.56807 1.88533 1.89303 1.24982 1.74107 1.37265 0.91570 0.91781 0.91202 0.90334 0.90060 0.92032 0.91154 0.91737 0.76767 0.86401 0.87866 0.90690 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.52 37.16 0.35 -0.93 16 2 C 0.07 0.67 3.92 -25.96 -0.10 0.57 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.15 -1.26 6.28 -25.17 -0.16 -1.42 16 5 C -0.12 -1.20 3.61 -89.06 -0.32 -1.52 16 6 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.16 -1.84 8.00 37.16 0.30 -1.54 16 8 C 0.06 0.84 3.63 -27.11 -0.10 0.74 16 9 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 10 C 0.51 9.25 5.37 -10.98 -0.06 9.19 16 11 O -0.51 -11.43 13.94 -13.61 -0.19 -11.62 16 12 N -0.65 -11.44 3.82 -9.71 -0.04 -11.48 16 13 C 0.01 0.29 6.32 -83.52 -0.53 -0.24 16 14 C -0.07 -1.71 8.61 -39.79 -0.34 -2.05 16 15 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 16 C 0.11 2.80 5.55 -106.81 -0.59 2.21 16 17 C -0.46 -11.64 9.02 -37.86 -0.34 -11.99 16 18 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 19 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 20 N -0.80 -20.38 10.59 55.55 0.59 -19.79 16 21 Si 0.92 18.45 29.56 -169.99 -5.03 13.42 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.14 -3.41 8.38 -39.23 -0.33 -3.73 16 26 C -0.02 -0.47 6.30 -39.72 -0.25 -0.72 16 27 Cl -0.12 -2.27 27.92 -51.86 -1.45 -3.72 16 28 O -0.34 -5.13 10.61 -54.40 -0.58 -5.70 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.70 7.46 -51.93 -0.39 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.93 6.34 -51.93 -0.33 0.61 16 36 H 0.06 0.89 8.09 -51.92 -0.42 0.47 16 37 H 0.40 5.87 8.05 -40.82 -0.33 5.54 16 38 H 0.12 2.69 6.18 -52.48 -0.32 2.37 16 39 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.14 3.76 6.13 -52.49 -0.32 3.44 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -29.43 349.04 -9.84 -39.27 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.46 Total: 9.47 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.95 Total: -15.11 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.55 Total: -31.27 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.77 Total: -17.32 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.45 Total: -3.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.43 -9.84 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.477 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds