Wall clock time and date at job start Tue Mar 31 2020 13:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.42227 * 2 1 4 4 C 1.54479 * 110.37286 * 237.69445 * 2 1 3 5 5 C 1.54505 * 104.06508 * 217.18957 * 4 2 1 6 6 H 1.09003 * 110.51086 * 241.21907 * 5 4 2 7 7 C 1.52996 * 110.51520 * 118.64558 * 5 4 2 8 8 C 1.54479 * 104.06220 * 359.97438 * 5 4 2 9 9 H 1.08995 * 110.37458 * 265.15061 * 8 5 4 10 10 C 1.50702 * 110.37334 * 142.91997 * 8 5 4 11 11 O 1.21279 * 120.00099 * 245.00317 * 10 8 5 12 12 N 1.34778 * 119.99786 * 65.00392 * 10 8 5 13 13 C 1.39270 * 119.99947 * 175.75522 * 12 10 8 14 14 C 1.39468 * 119.83552 * 34.72419 * 13 12 10 15 15 C 1.36377 * 120.17293 * 179.71671 * 14 13 12 16 16 C 1.40884 * 119.85369 * 0.53326 * 15 14 13 17 17 C 1.41148 * 120.16364 * 179.76413 * 16 15 14 18 18 H 1.08003 * 120.00006 * 34.74683 * 17 16 15 19 19 C 1.39899 * 120.00322 * 214.75568 * 17 16 15 20 20 N 1.30880 * 119.99947 * 355.58339 * 19 17 16 21 21 Si 1.86794 * 120.00253 * 175.58590 * 19 17 16 22 22 H 1.48504 * 109.47039 * 60.00026 * 21 19 17 23 23 H 1.48498 * 109.47209 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47095 * 299.99961 * 21 19 17 25 25 C 1.40846 * 119.67998 * 359.74229 * 16 15 14 26 26 C 1.36477 * 119.82061 * 359.97438 * 25 16 15 27 27 Cl 1.73598 * 119.92792 * 180.02562 * 26 25 16 28 28 O 1.44424 * 110.37643 * 122.31112 * 2 1 3 29 29 H 1.09002 * 109.46957 * 182.30782 * 1 2 3 30 30 H 1.08997 * 109.47088 * 302.30846 * 1 2 3 31 31 H 1.09006 * 109.47404 * 62.30770 * 1 2 3 32 32 H 1.09006 * 110.51285 * 98.54059 * 4 2 1 33 33 H 1.08995 * 110.51387 * 335.83488 * 4 2 1 34 34 H 1.08993 * 109.47477 * 61.44848 * 7 5 4 35 35 H 1.08994 * 109.47447 * 181.46084 * 7 5 4 36 36 H 1.09011 * 109.46708 * 301.45662 * 7 5 4 37 37 H 0.97004 * 120.00197 * 355.75258 * 12 10 8 38 38 H 1.08003 * 119.91331 * 0.02562 * 14 13 12 39 39 H 1.08010 * 120.07041 * 180.27017 * 15 14 13 40 40 H 0.96997 * 120.00292 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.08900 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7739 -1.2240 5 6 3.3177 -1.5056 -0.6861 6 1 4.2105 -1.1789 -1.2193 7 6 3.1462 -3.0210 -0.8087 8 6 3.3877 -1.0867 0.7992 9 1 4.0529 -0.2320 0.9214 10 6 3.8560 -2.2403 1.6482 11 8 3.1121 -2.7274 2.4730 12 7 5.1015 -2.7308 1.4910 13 6 5.5652 -3.7373 2.3345 14 6 4.6838 -4.7122 2.8013 15 6 5.1317 -5.7042 3.6230 16 6 6.4861 -5.7368 4.0094 17 6 6.9556 -6.7577 4.8636 18 1 6.5429 -7.7533 4.7928 19 6 7.9553 -6.4800 5.8020 20 7 8.5162 -5.2978 5.8302 21 14 8.4897 -7.7965 7.0147 22 1 9.0116 -8.9715 6.2715 23 1 9.5558 -7.2549 7.8952 24 1 7.3270 -8.2098 7.8409 25 6 7.3696 -4.7459 3.5390 26 6 6.9085 -3.7625 2.7126 27 17 7.9951 -2.5401 2.1305 28 8 2.0328 -0.7237 1.1442 29 1 -0.3633 -1.0269 0.0414 30 1 -0.3633 0.5492 0.8685 31 1 -0.3634 0.4776 -0.9100 32 1 2.3429 -0.0838 -2.0216 33 1 1.3276 -1.4918 -1.5774 34 1 3.0296 -3.2897 -1.8585 35 1 4.0252 -3.5203 -0.4012 36 1 2.2614 -3.3326 -0.2534 37 1 5.6749 -2.3827 0.7903 38 1 3.6449 -4.6842 2.5074 39 1 4.4486 -6.4609 3.9801 40 1 9.2096 -5.1054 6.4806 41 1 8.4092 -4.7647 3.8307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452646627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:00 Heat of formation + Delta-G solvation = -89.417239 kcal Electronic energy + Delta-G solvation = -25085.346424 eV Core-core repulsion = 21375.824727 eV Total energy + Delta-G solvation = -3709.521697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.87703 -40.30287 -38.96450 -37.24761 -36.21156 -35.06380 -34.25653 -33.07654 -31.32200 -30.93478 -28.28414 -27.91562 -26.44472 -23.75205 -22.91886 -22.20316 -22.11682 -20.81168 -19.42376 -18.69033 -18.03898 -17.66824 -17.20023 -16.67978 -16.30770 -15.95954 -15.70053 -15.28683 -15.00645 -14.73452 -14.49622 -14.22592 -14.09085 -13.87895 -13.53889 -13.45619 -13.33673 -13.21447 -13.02255 -12.80304 -12.68369 -12.40100 -12.20409 -12.16870 -11.98193 -11.76102 -11.68121 -11.61610 -11.59454 -11.24429 -10.89382 -10.75317 -10.51997 -9.41651 -8.84964 -8.55976 -6.40815 0.58086 0.93421 1.36864 1.40860 1.45261 1.52587 1.64891 1.97022 2.22603 2.71242 3.01027 3.39908 3.51148 3.56308 3.77228 3.95155 4.15668 4.22047 4.32774 4.37831 4.42956 4.59264 4.66881 4.74119 4.76369 4.88623 4.89466 4.97984 4.99292 5.04205 5.18442 5.19847 5.27265 5.28045 5.29153 5.43948 5.68715 5.80936 5.85990 6.02291 6.20927 6.50084 6.56787 6.84029 6.88293 7.25097 8.35951 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.003151 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.581603 B = 8883.194949 C = 9456.683425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.110 4.110 6 H 0.126 0.874 7 C -0.155 4.155 8 C 0.063 3.937 9 H 0.118 0.882 10 C 0.512 3.488 11 O -0.560 6.560 12 N -0.638 5.638 13 C 0.026 3.974 14 C -0.082 4.082 15 C -0.212 4.212 16 C 0.081 3.919 17 C -0.488 4.488 18 H 0.082 0.918 19 C 0.029 3.971 20 N -0.835 5.835 21 Si 0.990 3.010 22 H -0.256 1.256 23 H -0.270 1.270 24 H -0.264 1.264 25 C -0.152 4.152 26 C -0.027 4.027 27 Cl -0.084 7.084 28 O -0.380 6.380 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.287 0.713 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 10.229 -15.057 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 H 0.107 0.893 4 C -0.174 4.174 5 C -0.129 4.129 6 H 0.144 0.856 7 C -0.213 4.213 8 C 0.002 3.998 9 H 0.136 0.864 10 C 0.300 3.700 11 O -0.437 6.437 12 N -0.285 5.285 13 C -0.069 4.069 14 C -0.102 4.102 15 C -0.232 4.232 16 C 0.078 3.922 17 C -0.518 4.518 18 H 0.100 0.900 19 C -0.184 4.184 20 N -0.461 5.461 21 Si 0.811 3.189 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.189 1.189 25 C -0.173 4.173 26 C -0.055 4.055 27 Cl -0.056 7.056 28 O -0.299 6.299 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.252 0.748 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.701 10.138 -14.222 18.707 hybrid contribution 0.679 -0.343 0.601 0.970 sum -6.022 9.795 -13.620 17.825 Atomic orbital electron populations 1.21823 0.92443 1.02436 1.03487 1.23396 0.96245 0.96082 0.84467 0.89273 1.23119 0.96177 0.99890 0.98191 1.22586 1.01859 0.96532 0.91890 0.85599 1.21998 1.01290 0.94842 1.03123 1.23036 0.87097 0.95204 0.94483 0.86430 1.20881 0.81450 0.84339 0.83297 1.90678 1.54999 1.60854 1.37201 1.42805 1.15240 1.36750 1.33677 1.16919 0.91256 0.94207 1.04471 1.20474 0.98370 0.92981 0.98422 1.21038 0.95353 1.01374 1.05481 1.17894 0.90636 0.93098 0.90596 1.19734 1.18531 0.97570 1.16001 0.90003 1.26784 0.93866 0.98301 0.99481 1.69800 1.21034 1.22378 1.32934 0.85121 0.78419 0.78014 0.77380 1.18054 1.19413 1.18850 1.21114 1.01184 0.96671 0.98328 1.20427 0.89466 0.94035 1.01594 1.98246 1.64429 1.54969 1.87943 1.89280 1.25656 1.75023 1.39948 0.93166 0.92541 0.88173 0.86840 0.90133 0.89494 0.93075 0.94681 0.74758 0.86536 0.87447 0.90174 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.52 71.98 0.69 -1.62 16 2 C 0.05 0.98 3.92 31.10 0.12 1.11 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.14 -1.84 6.28 31.61 0.20 -1.64 16 5 C -0.11 -1.92 3.61 -9.78 -0.04 -1.95 16 6 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.16 -3.41 8.00 71.98 0.58 -2.83 16 8 C 0.06 1.59 3.63 30.35 0.11 1.70 16 9 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 10 C 0.51 18.24 5.37 87.66 0.47 18.71 16 11 O -0.56 -25.80 13.94 15.31 0.21 -25.58 16 12 N -0.64 -21.99 3.82 -303.02 -1.16 -23.15 16 13 C 0.03 1.14 6.32 38.58 0.24 1.39 16 14 C -0.08 -3.92 8.61 22.13 0.19 -3.73 16 15 C -0.21 -10.72 9.74 22.48 0.22 -10.50 16 16 C 0.08 4.32 5.55 -21.28 -0.12 4.21 16 17 C -0.49 -25.86 9.02 23.39 0.21 -25.65 16 18 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 19 C 0.03 1.44 5.42 85.24 0.46 1.90 16 20 N -0.83 -43.26 10.59 21.82 0.23 -43.02 16 21 Si 0.99 38.10 29.56 68.60 2.03 40.13 16 22 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 C -0.15 -7.85 8.38 22.50 0.19 -7.66 16 26 C -0.03 -1.21 6.30 22.18 0.14 -1.07 16 27 Cl -0.08 -3.09 27.92 -2.72 -0.08 -3.17 16 28 O -0.38 -11.11 10.61 -130.65 -1.39 -12.50 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 1.12 7.46 -2.39 -0.02 1.11 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.30 6.34 -2.39 -0.02 1.29 16 36 H 0.03 0.96 8.09 -2.38 -0.02 0.94 16 37 H 0.41 11.37 8.05 -92.71 -0.75 10.62 16 38 H 0.12 5.56 6.18 -2.91 -0.02 5.54 16 39 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 40 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 41 H 0.13 7.00 6.13 -2.91 -0.02 6.98 16 Total: -1.00 -67.54 349.04 3.83 -63.71 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.32 Total: 31.22 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.66 Total: -27.65 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.93 Total: -66.18 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.17 Total: -38.08 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.08 Total: -3.17 kcal Total: -67.54 3.83 -63.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.705 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds