Wall clock time and date at job start Tue Mar 31 2020 13:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.55724 * 2 1 4 4 C 1.54999 * 110.62019 * 237.11777 * 2 1 3 5 5 C 1.54807 * 102.09225 * 204.47903 * 4 2 1 6 6 H 1.09002 * 110.49162 * 139.55484 * 5 4 2 7 7 C 1.52998 * 110.48944 * 262.20261 * 5 4 2 8 8 C 1.54098 * 104.19134 * 20.87824 * 5 4 2 9 9 H 1.09002 * 109.87709 * 121.60399 * 8 5 4 10 10 C 1.50697 * 109.88222 * 242.60608 * 8 5 4 11 11 O 1.21282 * 120.00015 * 114.99484 * 10 8 5 12 12 N 1.34770 * 120.00083 * 295.27511 * 10 8 5 13 13 C 1.39266 * 120.00236 * 174.11392 * 12 10 8 14 14 C 1.39461 * 119.83969 * 335.09140 * 13 12 10 15 15 C 1.36377 * 120.18176 * 179.71418 * 14 13 12 16 16 C 1.40889 * 119.84692 * 0.53095 * 15 14 13 17 17 C 1.41150 * 120.15934 * 179.76502 * 16 15 14 18 18 H 1.08001 * 120.00036 * 34.90711 * 17 16 15 19 19 C 1.39906 * 119.99913 * 214.91098 * 17 16 15 20 20 N 1.30873 * 119.99894 * 355.17650 * 19 17 16 21 21 Si 1.86797 * 119.99902 * 175.17833 * 19 17 16 22 22 H 1.48500 * 109.47155 * 89.99541 * 21 19 17 23 23 H 1.48501 * 109.47266 * 209.99710 * 21 19 17 24 24 H 1.48501 * 109.46959 * 329.99869 * 21 19 17 25 25 C 1.40846 * 119.68396 * 359.74052 * 16 15 14 26 26 C 1.36478 * 119.81842 * 0.02562 * 25 16 15 27 27 Cl 1.73600 * 119.92661 * 179.97438 * 26 25 16 28 28 O 1.43743 * 107.29246 * 2.03300 * 8 5 4 29 29 H 1.09003 * 109.47133 * 182.87831 * 1 2 3 30 30 H 1.08997 * 109.46995 * 302.88194 * 1 2 3 31 31 H 1.08998 * 109.46491 * 62.88225 * 1 2 3 32 32 H 1.08990 * 110.90806 * 86.27747 * 4 2 1 33 33 H 1.09005 * 110.90722 * 322.67104 * 4 2 1 34 34 H 1.08994 * 109.47740 * 174.76977 * 7 5 4 35 35 H 1.09007 * 109.46908 * 294.77053 * 7 5 4 36 36 H 1.09005 * 109.47180 * 54.76756 * 7 5 4 37 37 H 0.97004 * 120.00218 * 354.11647 * 12 10 8 38 38 H 1.08006 * 119.90930 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.08027 * 180.27383 * 15 14 13 40 40 H 0.97004 * 119.99494 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.09254 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0205 0.0000 4 6 2.0759 -0.7876 -1.2183 5 6 3.4795 -1.2157 -0.7252 6 1 3.6975 -2.2377 -1.0352 7 6 4.5480 -0.2556 -1.2518 8 6 3.3839 -1.1266 0.8102 9 1 3.6070 -2.0976 1.2524 10 6 4.3537 -0.0944 1.3250 11 8 3.9405 0.9088 1.8670 12 7 5.6800 -0.2834 1.1782 13 6 6.5713 0.7230 1.5419 14 6 6.1493 2.0521 1.5554 15 6 7.0146 3.0426 1.9160 16 6 8.3414 2.7219 2.2649 17 6 9.2439 3.7423 2.6343 18 1 8.8911 4.6023 3.1842 19 6 10.5956 3.6398 2.2881 20 7 11.0414 2.5560 1.7055 21 14 11.7639 5.0497 2.6575 22 1 12.3519 4.8643 4.0085 23 1 12.8491 5.0718 1.6441 24 1 11.0194 6.3338 2.6137 25 6 8.7628 1.3781 2.2437 26 6 7.8844 0.3970 1.8853 27 17 8.4009 -1.2601 1.8576 28 8 2.0384 -0.7370 1.1327 29 1 -0.3633 -1.0264 0.0516 30 1 -0.3633 0.5579 0.8630 31 1 -0.3632 0.4684 -0.9147 32 1 2.1510 -0.1447 -2.0951 33 1 1.4550 -1.6586 -1.4282 34 1 5.5147 -0.5161 -0.8211 35 1 4.6016 -0.3320 -2.3379 36 1 4.2888 0.7655 -0.9717 37 1 6.0138 -1.1204 0.8192 38 1 5.1332 2.2973 1.2835 39 1 6.6848 4.0709 1.9301 40 1 11.9787 2.4848 1.4658 41 1 9.7782 1.1248 2.5103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452646630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:07 Heat of formation + Delta-G solvation = -65.985810 kcal Electronic energy + Delta-G solvation = -25358.086780 eV Core-core repulsion = 21649.581146 eV Total energy + Delta-G solvation = -3708.505634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88353 -38.85089 -37.23268 -35.56806 -34.75655 -33.73001 -32.83866 -32.12693 -29.47802 -29.17201 -26.96602 -26.88753 -24.87889 -22.46681 -21.65161 -20.97451 -20.68351 -19.50504 -17.63456 -17.12248 -16.84607 -16.25910 -15.86253 -15.32606 -14.94546 -14.62546 -14.27584 -13.90316 -13.56241 -13.37607 -12.97655 -12.78899 -12.67859 -12.62504 -12.46011 -12.21423 -12.07945 -11.82743 -11.57417 -11.40312 -11.20387 -11.08530 -11.03336 -10.93096 -10.82005 -10.46246 -10.36852 -10.22598 -10.04476 -9.85179 -9.44359 -9.10823 -8.72312 -7.58435 -6.98321 -6.73958 -4.46782 2.30335 2.80154 2.94829 3.05031 3.08401 3.10493 3.23015 3.47108 3.81950 3.90126 4.27476 4.48042 4.55073 4.75737 4.81345 5.02080 5.19364 5.20140 5.35065 5.39577 5.44431 5.49849 5.58417 5.63058 5.80031 5.92723 5.94865 6.01803 6.14552 6.25637 6.48096 6.56923 6.75537 6.85439 6.97564 7.12962 7.29451 7.54269 7.63593 7.85640 8.05224 8.12003 8.41482 8.62051 8.76486 8.79701 10.16714 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.003372 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.280068 B = 8302.669436 C = 9005.554977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.115 4.115 6 H 0.093 0.907 7 C -0.163 4.163 8 C 0.065 3.935 9 H 0.115 0.885 10 C 0.488 3.512 11 O -0.516 6.516 12 N -0.647 5.647 13 C 0.020 3.980 14 C -0.085 4.085 15 C -0.198 4.198 16 C 0.106 3.894 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.069 3.931 20 N -0.806 5.806 21 Si 0.918 3.082 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.132 4.132 26 C -0.027 4.027 27 Cl -0.120 7.120 28 O -0.342 6.342 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.399 0.601 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.281 0.719 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -7.943 -6.936 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.134 4.134 6 H 0.111 0.889 7 C -0.220 4.220 8 C 0.003 3.997 9 H 0.133 0.867 10 C 0.274 3.726 11 O -0.391 6.391 12 N -0.293 5.293 13 C -0.074 4.074 14 C -0.105 4.105 15 C -0.218 4.218 16 C 0.102 3.898 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.147 4.147 20 N -0.433 5.433 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.153 4.153 26 C -0.056 4.056 27 Cl -0.092 7.092 28 O -0.260 6.260 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.235 0.765 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.354 -7.522 -6.465 15.076 hybrid contribution 1.080 -0.005 -0.259 1.110 sum -10.274 -7.527 -6.724 14.402 Atomic orbital electron populations 1.21744 0.93058 1.02760 1.02506 1.23205 0.95119 0.96058 0.84507 0.90653 1.23276 0.95323 1.00845 0.98863 1.22466 0.96587 1.01525 0.92839 0.88867 1.22283 0.99062 0.99328 1.01377 1.22743 0.84091 0.97307 0.95586 0.86699 1.20967 0.83038 0.88697 0.79850 1.90658 1.77918 1.29076 1.41494 1.43267 1.05332 1.18022 1.62683 1.16952 0.88219 0.88045 1.14169 1.20491 0.99546 0.89994 1.00450 1.20927 0.95326 0.97559 1.08015 1.17598 0.91246 0.91648 0.89261 1.19500 0.92129 1.05106 1.31924 0.90156 1.25917 0.98876 0.96882 0.92976 1.69736 1.16576 1.26033 1.30914 0.86146 0.79356 0.81367 0.78883 1.19403 1.20204 1.18613 1.21220 0.99908 0.90861 1.03301 1.20395 0.93746 0.83129 1.08287 1.98250 1.91213 1.22154 1.97603 1.88954 1.24301 1.72911 1.39791 0.91878 0.91709 0.91145 0.89867 0.90250 0.90443 0.91996 0.91983 0.76466 0.85868 0.87920 0.90822 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.66 37.16 0.36 -0.99 16 2 C 0.07 0.82 3.88 -25.67 -0.10 0.72 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.15 -1.37 6.15 -24.72 -0.15 -1.52 16 5 C -0.12 -1.19 3.64 -89.10 -0.32 -1.52 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.16 -1.93 7.84 37.16 0.29 -1.64 16 8 C 0.06 0.86 3.89 -27.31 -0.11 0.75 16 9 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 10 C 0.49 8.44 5.33 -10.99 -0.06 8.38 16 11 O -0.52 -10.99 13.62 -14.02 -0.19 -11.18 16 12 N -0.65 -11.21 3.28 -9.71 -0.03 -11.24 16 13 C 0.02 0.43 6.44 -83.52 -0.54 -0.11 16 14 C -0.08 -1.94 8.63 -39.80 -0.34 -2.28 16 15 C -0.20 -4.77 9.74 -39.25 -0.38 -5.16 16 16 C 0.11 2.71 5.55 -106.80 -0.59 2.12 16 17 C -0.46 -11.68 9.02 -37.85 -0.34 -12.02 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 20 N -0.81 -20.13 10.59 55.55 0.59 -19.54 16 21 Si 0.92 18.35 29.56 -169.99 -5.03 13.32 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.13 -3.31 8.38 -39.23 -0.33 -3.63 16 26 C -0.03 -0.61 6.30 -39.71 -0.25 -0.86 16 27 Cl -0.12 -2.26 27.74 -51.86 -1.44 -3.70 16 28 O -0.34 -5.04 10.45 -54.81 -0.57 -5.61 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 34 H 0.08 1.00 5.24 -51.93 -0.27 0.73 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.06 0.87 7.49 -51.93 -0.39 0.49 16 37 H 0.40 5.91 6.73 -40.82 -0.27 5.63 16 38 H 0.12 2.78 5.77 -52.48 -0.30 2.48 16 39 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 41 H 0.14 3.76 6.13 -52.49 -0.32 3.44 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -28.64 344.91 -9.75 -38.39 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.32 Total: 10.51 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.96 Total: -16.15 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.56 Total: -30.78 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.76 Total: -16.79 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.44 Total: -3.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.64 -9.75 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452646630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.592 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds