Wall clock time and date at job start Tue Mar 31 2020 13:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.82004 * 2 1 4 4 C 1.54380 * 109.83399 * 239.11438 * 2 1 3 5 5 C 1.55299 * 102.25189 * 219.03958 * 4 2 1 6 6 H 1.09005 * 111.12879 * 152.05101 * 5 4 2 7 7 C 1.53005 * 111.12573 * 276.16344 * 5 4 2 8 8 C 1.54947 * 100.94542 * 34.12871 * 5 4 2 9 9 H 1.08997 * 110.30674 * 82.47707 * 8 5 4 10 10 C 1.50703 * 110.30814 * 204.63972 * 8 5 4 11 11 O 1.21282 * 119.99910 * 114.99985 * 10 8 5 12 12 N 1.34778 * 120.00439 * 294.99942 * 10 8 5 13 13 C 1.37131 * 119.99565 * 354.80872 * 12 10 8 14 14 H 1.07997 * 120.00051 * 345.10315 * 13 12 10 15 15 C 1.38887 * 120.00028 * 165.10794 * 13 12 10 16 16 N 1.31432 * 119.99778 * 343.98045 * 15 13 12 17 17 Si 1.86793 * 120.00076 * 163.97628 * 15 13 12 18 18 H 1.48500 * 109.47180 * 60.00250 * 17 15 13 19 19 H 1.48509 * 109.46822 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47590 * 299.99857 * 17 15 13 21 21 C 1.39802 * 120.00122 * 174.80628 * 12 10 8 22 22 C 1.38960 * 120.06433 * 101.95752 * 21 12 10 23 23 C 1.38074 * 119.93123 * 179.72321 * 22 21 12 24 24 C 1.38414 * 120.06952 * 0.54784 * 23 22 21 25 25 Cl 1.73596 * 119.94097 * 179.70187 * 24 23 22 26 26 C 1.38427 * 120.12715 * 359.72653 * 24 23 22 27 27 C 1.38065 * 120.06448 * 359.97438 * 26 24 23 28 28 O 1.43241 * 109.90956 * 120.92997 * 2 1 3 29 29 H 1.09007 * 109.46813 * 180.88966 * 1 2 3 30 30 H 1.08997 * 109.47368 * 300.88550 * 1 2 3 31 31 H 1.08995 * 109.47350 * 60.88950 * 1 2 3 32 32 H 1.08999 * 110.85045 * 100.84356 * 4 2 1 33 33 H 1.09003 * 110.84198 * 337.22453 * 4 2 1 34 34 H 1.09007 * 109.46352 * 55.10668 * 7 5 4 35 35 H 1.08993 * 109.47301 * 175.10238 * 7 5 4 36 36 H 1.09001 * 109.47000 * 295.11141 * 7 5 4 37 37 H 0.96994 * 119.99880 * 185.01957 * 16 15 13 38 38 H 1.07993 * 120.03210 * 359.96820 * 22 21 12 39 39 H 1.08007 * 119.96410 * 180.27248 * 23 22 21 40 40 H 1.07997 * 119.96873 * 180.02562 * 26 24 23 41 41 H 1.08004 * 120.03749 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0255 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2744 -1.5196 -0.6784 6 1 3.4595 -2.4320 -1.2454 7 6 4.5216 -0.6339 -0.6435 8 6 2.7777 -1.8429 0.7532 9 1 2.1443 -2.7299 0.7425 10 6 3.9487 -2.0463 1.6797 11 8 4.1369 -1.2759 2.5973 12 7 4.7870 -3.0843 1.4887 13 6 4.5157 -4.0150 0.5189 14 1 3.5321 -4.0619 0.0754 15 6 5.5059 -4.8976 0.1070 16 7 6.7646 -4.6549 0.3971 17 14 5.0486 -6.4295 -0.8592 18 1 4.3720 -6.0353 -2.1209 19 1 6.2780 -7.2001 -1.1760 20 1 4.1326 -7.2712 -0.0483 21 6 5.9330 -3.2119 2.2792 22 6 5.9554 -4.1196 3.3311 23 6 7.0907 -4.2475 4.1065 24 6 8.2017 -3.4648 3.8440 25 17 9.6246 -3.6230 4.8258 26 6 8.1803 -2.5558 2.8003 27 6 7.0501 -2.4278 2.0176 28 8 2.0178 -0.6922 1.1553 29 1 -0.3633 -1.0276 0.0160 30 1 -0.3634 0.5275 0.8819 31 1 -0.3634 0.4999 -0.8978 32 1 2.3657 -0.0409 -2.0172 33 1 1.3018 -1.4348 -1.6304 34 1 4.3058 0.2752 -0.0821 35 1 5.3370 -1.1734 -0.1619 36 1 4.8101 -0.3724 -1.6616 37 1 7.4625 -5.2311 0.0482 38 1 5.0872 -4.7271 3.5395 39 1 7.1103 -4.9560 4.9215 40 1 9.0487 -1.9466 2.5975 41 1 7.0339 -1.7186 1.2032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592650833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:36 Heat of formation + Delta-G solvation = -53.465134 kcal Electronic energy + Delta-G solvation = -26248.212913 eV Core-core repulsion = 22540.250216 eV Total energy + Delta-G solvation = -3707.962697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17149 -38.87317 -37.23418 -35.81321 -34.73431 -32.90754 -31.77933 -31.68437 -30.20696 -28.98558 -26.54094 -26.27693 -25.04377 -22.21825 -21.93090 -20.76454 -20.44337 -19.12962 -17.98588 -16.69401 -16.20912 -15.53345 -15.32434 -15.00285 -14.81847 -14.45939 -14.16138 -13.89114 -13.50089 -12.92494 -12.79455 -12.68420 -12.61564 -12.39338 -12.31228 -12.05436 -11.78307 -11.69680 -11.47536 -11.27741 -11.09515 -10.97160 -10.78106 -10.70161 -10.56697 -10.50427 -10.47157 -10.21877 -10.09727 -9.50201 -9.26802 -8.45254 -8.22400 -8.12081 -7.61467 -6.36453 -4.12988 2.10861 2.26307 2.79466 3.00993 3.11664 3.12947 3.62075 3.76994 4.05797 4.59022 4.64580 4.84028 4.93005 4.99882 5.27628 5.39430 5.46249 5.53724 5.62406 5.64861 5.74161 5.89429 5.94053 5.99339 6.03679 6.17067 6.18437 6.24901 6.28963 6.33031 6.37630 6.46535 6.63039 6.75931 6.84173 6.90318 7.05276 7.19418 7.40494 7.46687 7.52495 7.72868 8.29130 8.89305 9.22743 9.66951 10.50131 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004881 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.816285 B = 5735.317677 C = 7065.031404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.074 3.926 3 H 0.074 0.926 4 C -0.150 4.150 5 C -0.103 4.103 6 H 0.105 0.895 7 C -0.139 4.139 8 C 0.088 3.912 9 H 0.084 0.916 10 C 0.475 3.525 11 O -0.574 6.574 12 N -0.415 5.415 13 C -0.353 4.353 14 H 0.102 0.898 15 C 0.047 3.953 16 N -0.849 5.849 17 Si 0.918 3.082 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.253 3.747 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.052 4.052 25 Cl -0.105 7.105 26 C -0.108 4.108 27 C -0.060 4.060 28 O -0.354 6.354 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.275 0.725 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.397 2.755 -2.996 5.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.092 0.908 4 C -0.187 4.187 5 C -0.122 4.122 6 H 0.123 0.877 7 C -0.196 4.196 8 C 0.027 3.973 9 H 0.101 0.899 10 C 0.264 3.736 11 O -0.456 6.456 12 N -0.134 5.134 13 C -0.478 4.478 14 H 0.120 0.880 15 C -0.161 4.161 16 N -0.485 5.485 17 Si 0.744 3.256 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.197 1.197 21 C 0.162 3.838 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.079 4.079 25 Cl -0.076 7.076 26 C -0.127 4.127 27 C -0.079 4.079 28 O -0.272 6.272 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.033 3.063 -2.235 4.855 hybrid contribution 0.057 -1.183 -0.897 1.486 sum -2.976 1.880 -3.132 4.712 Atomic orbital electron populations 1.22133 0.95434 1.02383 1.01776 1.22672 0.93710 0.96419 0.85580 0.90836 1.23299 0.98003 0.99642 0.97803 1.22650 0.94774 1.00108 0.94676 0.87706 1.21700 0.97484 0.99380 1.01073 1.22566 0.91952 0.89486 0.93250 0.89886 1.19870 0.85389 0.81402 0.86906 1.90608 1.75402 1.46057 1.33578 1.41246 1.19267 1.22156 1.30724 1.19515 0.98805 1.11313 1.18201 0.87991 1.25211 0.94656 0.98958 0.97239 1.69846 0.99043 1.37554 1.42017 0.86126 0.78190 0.81601 0.79634 1.19787 1.20768 1.19736 1.17127 0.86493 0.92128 0.88041 1.20965 0.97514 0.99477 0.95314 1.20554 0.92090 0.99603 1.00481 1.20569 0.88179 1.02300 0.96831 1.98289 1.41001 1.97555 1.70797 1.20568 0.98437 0.98660 0.95069 1.20771 0.91404 0.98684 0.97071 1.88502 1.69444 1.40369 1.28930 0.92278 0.92175 0.91923 0.90298 0.90598 0.92955 0.91061 0.92958 0.91397 0.86421 0.86411 0.86402 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.44 37.16 0.35 -1.56 16 2 C 0.07 1.09 3.82 -26.01 -0.10 0.99 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.15 -1.98 6.05 -24.79 -0.15 -2.13 16 5 C -0.10 -1.72 2.82 -88.37 -0.25 -1.97 16 6 H 0.10 1.77 6.89 -51.93 -0.36 1.41 16 7 C -0.14 -2.42 8.55 37.16 0.32 -2.10 16 8 C 0.09 1.72 2.75 -26.85 -0.07 1.65 16 9 H 0.08 1.56 7.40 -51.93 -0.38 1.17 16 10 C 0.48 11.07 5.35 -10.98 -0.06 11.01 16 11 O -0.57 -15.25 16.53 -13.79 -0.23 -15.48 16 12 N -0.42 -9.65 2.34 -58.97 -0.14 -9.79 16 13 C -0.35 -7.97 8.10 -14.94 -0.12 -8.09 16 14 H 0.10 2.15 5.71 -52.49 -0.30 1.85 16 15 C 0.05 1.07 5.25 -17.48 -0.09 0.98 16 16 N -0.85 -20.26 10.33 55.49 0.57 -19.68 16 17 Si 0.92 18.11 29.58 -169.99 -5.03 13.08 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 C 0.25 5.90 2.26 -83.68 -0.19 5.71 16 22 C -0.11 -2.48 9.90 -39.37 -0.39 -2.87 16 23 C -0.11 -2.13 9.82 -39.58 -0.39 -2.52 16 24 C -0.05 -1.02 6.32 -39.45 -0.25 -1.27 16 25 Cl -0.10 -1.75 28.95 -51.86 -1.50 -3.25 16 26 C -0.11 -2.16 9.82 -39.57 -0.39 -2.54 16 27 C -0.06 -1.33 8.73 -39.37 -0.34 -1.67 16 28 O -0.35 -6.92 10.27 -54.58 -0.56 -7.48 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 33 H 0.08 0.89 7.85 -51.93 -0.41 0.49 16 34 H 0.05 0.93 7.87 -51.92 -0.41 0.52 16 35 H 0.07 1.45 6.37 -51.93 -0.33 1.11 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.27 6.44 8.32 -40.82 -0.34 6.10 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 40 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.11 2.54 7.47 -52.48 -0.39 2.15 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -27.26 349.13 -9.26 -36.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.52 Total: 7.20 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.13 Total: -6.38 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.44 Total: -29.47 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.79 Total: -22.96 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -1.50 Total: -3.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.26 -9.26 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.942 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds