Wall clock time and date at job start Tue Mar 31 2020 13:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.82004 * 2 1 4 4 C 1.54380 * 109.83399 * 239.11438 * 2 1 3 5 5 C 1.55299 * 102.25189 * 219.03958 * 4 2 1 6 6 H 1.09005 * 111.12879 * 152.05101 * 5 4 2 7 7 C 1.53005 * 111.12573 * 276.16344 * 5 4 2 8 8 C 1.54947 * 100.94542 * 34.12871 * 5 4 2 9 9 H 1.08997 * 110.30674 * 82.47707 * 8 5 4 10 10 C 1.50703 * 110.30814 * 204.63972 * 8 5 4 11 11 O 1.21282 * 119.99910 * 114.99985 * 10 8 5 12 12 N 1.34778 * 120.00439 * 294.99942 * 10 8 5 13 13 C 1.37131 * 119.99565 * 354.80872 * 12 10 8 14 14 H 1.07997 * 120.00051 * 345.10315 * 13 12 10 15 15 C 1.38887 * 120.00028 * 165.10794 * 13 12 10 16 16 N 1.31432 * 119.99778 * 343.98045 * 15 13 12 17 17 Si 1.86793 * 120.00076 * 163.97628 * 15 13 12 18 18 H 1.48500 * 109.47180 * 60.00250 * 17 15 13 19 19 H 1.48509 * 109.46822 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47590 * 299.99857 * 17 15 13 21 21 C 1.39802 * 120.00122 * 174.80628 * 12 10 8 22 22 C 1.38960 * 120.06433 * 101.95752 * 21 12 10 23 23 C 1.38074 * 119.93123 * 179.72321 * 22 21 12 24 24 C 1.38414 * 120.06952 * 0.54784 * 23 22 21 25 25 Cl 1.73596 * 119.94097 * 179.70187 * 24 23 22 26 26 C 1.38427 * 120.12715 * 359.72653 * 24 23 22 27 27 C 1.38065 * 120.06448 * 359.97438 * 26 24 23 28 28 O 1.43241 * 109.90956 * 120.92997 * 2 1 3 29 29 H 1.09007 * 109.46813 * 180.88966 * 1 2 3 30 30 H 1.08997 * 109.47368 * 300.88550 * 1 2 3 31 31 H 1.08995 * 109.47350 * 60.88950 * 1 2 3 32 32 H 1.08999 * 110.85045 * 100.84356 * 4 2 1 33 33 H 1.09003 * 110.84198 * 337.22453 * 4 2 1 34 34 H 1.09007 * 109.46352 * 55.10668 * 7 5 4 35 35 H 1.08993 * 109.47301 * 175.10238 * 7 5 4 36 36 H 1.09001 * 109.47000 * 295.11141 * 7 5 4 37 37 H 0.96994 * 119.99880 * 185.01957 * 16 15 13 38 38 H 1.07993 * 120.03210 * 359.96820 * 22 21 12 39 39 H 1.08007 * 119.96410 * 180.27248 * 23 22 21 40 40 H 1.07997 * 119.96873 * 180.02562 * 26 24 23 41 41 H 1.08004 * 120.03749 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0255 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2744 -1.5196 -0.6784 6 1 3.4595 -2.4320 -1.2454 7 6 4.5216 -0.6339 -0.6435 8 6 2.7777 -1.8429 0.7532 9 1 2.1443 -2.7299 0.7425 10 6 3.9487 -2.0463 1.6797 11 8 4.1369 -1.2759 2.5973 12 7 4.7870 -3.0843 1.4887 13 6 4.5157 -4.0150 0.5189 14 1 3.5321 -4.0619 0.0754 15 6 5.5059 -4.8976 0.1070 16 7 6.7646 -4.6549 0.3971 17 14 5.0486 -6.4295 -0.8592 18 1 4.3720 -6.0353 -2.1209 19 1 6.2780 -7.2001 -1.1760 20 1 4.1326 -7.2712 -0.0483 21 6 5.9330 -3.2119 2.2792 22 6 5.9554 -4.1196 3.3311 23 6 7.0907 -4.2475 4.1065 24 6 8.2017 -3.4648 3.8440 25 17 9.6246 -3.6230 4.8258 26 6 8.1803 -2.5558 2.8003 27 6 7.0501 -2.4278 2.0176 28 8 2.0178 -0.6922 1.1553 29 1 -0.3633 -1.0276 0.0160 30 1 -0.3634 0.5275 0.8819 31 1 -0.3634 0.4999 -0.8978 32 1 2.3657 -0.0409 -2.0172 33 1 1.3018 -1.4348 -1.6304 34 1 4.3058 0.2752 -0.0821 35 1 5.3370 -1.1734 -0.1619 36 1 4.8101 -0.3724 -1.6616 37 1 7.4625 -5.2311 0.0482 38 1 5.0872 -4.7271 3.5395 39 1 7.1103 -4.9560 4.9215 40 1 9.0487 -1.9466 2.5975 41 1 7.0339 -1.7186 1.2032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592650833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:36 Heat of formation + Delta-G solvation = -65.634567 kcal Electronic energy + Delta-G solvation = -26248.740619 eV Core-core repulsion = 22540.250216 eV Total energy + Delta-G solvation = -3708.490403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73516 -40.38055 -38.86152 -37.36222 -36.45910 -34.29810 -33.48986 -32.92451 -31.84861 -30.59544 -27.93747 -27.56256 -26.77666 -23.76108 -23.56899 -22.17123 -21.71241 -20.81212 -19.63423 -18.23333 -17.77748 -17.01721 -16.81589 -16.66391 -16.46511 -16.01710 -15.53170 -15.43472 -15.03913 -14.45448 -14.30375 -14.15156 -14.12783 -13.74465 -13.63530 -13.39550 -13.27969 -13.11087 -12.88731 -12.77279 -12.56516 -12.44164 -12.34458 -12.16386 -12.10751 -11.98273 -11.72505 -11.69265 -11.39382 -11.21073 -10.69546 -10.14547 -9.97885 -9.77343 -9.28528 -8.09836 -5.92314 0.46746 0.60261 1.26280 1.43000 1.51320 1.57695 1.89865 2.19930 2.50769 2.92208 3.18587 3.25134 3.55219 3.85630 3.96081 4.01785 4.06344 4.10230 4.29968 4.41974 4.44735 4.49956 4.64312 4.66916 4.74192 4.77567 4.82331 4.85941 4.97073 5.06511 5.12392 5.18741 5.23354 5.27586 5.35562 5.39885 5.42983 5.46161 5.71645 5.83855 6.02062 6.14249 6.54109 7.11775 7.47459 7.91064 8.74711 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004881 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.816285 B = 5735.317677 C = 7065.031404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 H 0.074 0.926 4 C -0.134 4.134 5 C -0.101 4.101 6 H 0.105 0.895 7 C -0.132 4.132 8 C 0.090 3.910 9 H 0.089 0.911 10 C 0.462 3.538 11 O -0.621 6.621 12 N -0.415 5.415 13 C -0.361 4.361 14 H 0.115 0.885 15 C 0.013 3.987 16 N -0.870 5.870 17 Si 0.978 3.022 18 H -0.258 1.258 19 H -0.290 1.290 20 H -0.273 1.273 21 C 0.228 3.772 22 C -0.133 4.133 23 C -0.104 4.104 24 C -0.055 4.055 25 Cl -0.074 7.074 26 C -0.107 4.107 27 C -0.078 4.078 28 O -0.385 6.385 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.270 0.730 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 2.242 -4.398 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 H 0.092 0.908 4 C -0.171 4.171 5 C -0.120 4.120 6 H 0.123 0.877 7 C -0.189 4.189 8 C 0.029 3.971 9 H 0.107 0.893 10 C 0.252 3.748 11 O -0.507 6.507 12 N -0.132 5.132 13 C -0.487 4.487 14 H 0.132 0.868 15 C -0.193 4.193 16 N -0.505 5.505 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.216 1.216 20 H -0.198 1.198 21 C 0.137 3.863 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.082 4.082 25 Cl -0.045 7.045 26 C -0.126 4.126 27 C -0.097 4.097 28 O -0.305 6.305 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.627 2.546 -3.654 5.743 hybrid contribution 0.343 -0.989 -0.380 1.113 sum -3.284 1.557 -4.033 5.429 Atomic orbital electron populations 1.22097 0.93100 1.02779 1.03062 1.23008 0.95563 0.96134 0.84889 0.90760 1.23283 0.96500 0.99852 0.97473 1.22635 0.95817 1.00478 0.93065 0.87698 1.21615 0.96822 0.98493 1.02002 1.22530 0.90698 0.90048 0.93790 0.89318 1.20609 0.86368 0.80784 0.86990 1.90549 1.76897 1.47612 1.35673 1.41430 1.19129 1.22109 1.30580 1.19859 0.99439 1.11152 1.18210 0.86752 1.25911 0.94465 1.00878 0.98039 1.70002 0.99712 1.38044 1.42738 0.85203 0.77438 0.78222 0.78930 1.18236 1.21617 1.19839 1.17443 0.86948 0.93031 0.88898 1.21084 0.98498 0.99822 0.95932 1.20830 0.91355 0.99673 1.00450 1.20660 0.89203 1.01531 0.96773 1.98296 1.39066 1.97413 1.69773 1.20813 0.98337 0.98758 0.94674 1.20769 0.92319 0.98975 0.97677 1.88474 1.69597 1.40620 1.31789 0.92239 0.92781 0.88820 0.87760 0.88355 0.94082 0.94744 0.90219 0.91919 0.86704 0.83746 0.84190 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.44 71.98 0.68 -2.61 16 2 C 0.06 1.70 3.82 31.06 0.12 1.82 16 3 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 4 C -0.13 -3.16 6.05 31.85 0.19 -2.97 16 5 C -0.10 -3.28 2.82 -9.34 -0.03 -3.31 16 6 H 0.10 3.40 6.89 -2.38 -0.02 3.38 16 7 C -0.13 -4.62 8.55 71.98 0.62 -4.00 16 8 C 0.09 3.55 2.75 30.51 0.08 3.63 16 9 H 0.09 3.33 7.40 -2.39 -0.02 3.31 16 10 C 0.46 22.41 5.35 87.66 0.47 22.88 16 11 O -0.62 -34.83 16.53 15.47 0.26 -34.57 16 12 N -0.42 -19.98 2.34 -458.88 -1.08 -21.06 16 13 C -0.36 -16.49 8.10 84.02 0.68 -15.81 16 14 H 0.11 4.79 5.71 -2.91 -0.02 4.78 16 15 C 0.01 0.57 5.25 84.91 0.45 1.01 16 16 N -0.87 -42.00 10.33 21.65 0.22 -41.77 16 17 Si 0.98 36.55 29.58 68.60 2.03 38.58 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 H -0.29 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 21 C 0.23 10.99 2.26 38.22 0.09 11.08 16 22 C -0.13 -6.01 9.90 22.40 0.22 -5.79 16 23 C -0.10 -4.07 9.82 22.27 0.22 -3.85 16 24 C -0.06 -2.10 6.32 22.36 0.14 -1.96 16 25 Cl -0.07 -2.33 28.95 -2.72 -0.08 -2.41 16 26 C -0.11 -4.28 9.82 22.27 0.22 -4.06 16 27 C -0.08 -3.59 8.73 22.40 0.20 -3.39 16 28 O -0.39 -15.21 10.27 -130.48 -1.34 -16.55 16 29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.97 8.04 -2.39 -0.02 1.95 16 33 H 0.10 1.92 7.85 -2.39 -0.02 1.90 16 34 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16 35 H 0.03 1.44 6.37 -2.39 -0.02 1.43 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.27 12.79 8.32 -92.71 -0.77 12.02 16 38 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 39 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.10 4.81 7.47 -2.91 -0.02 4.79 16 Total: -1.00 -61.00 349.13 5.39 -55.60 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.04 Total: 29.49 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.34 Total: -7.32 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.85 Total: -62.83 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -1.08 Total: -51.12 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -61.00 5.39 -55.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.032 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds