Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.46501 * 120.00252 * 274.44034 * 3 2 1 5 5 C 1.50697 * 109.47117 * 264.03000 * 4 3 2 6 6 H 1.08007 * 120.00228 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00164 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46946 * 89.99835 * 9 7 5 11 11 H 1.48501 * 109.47007 * 209.99621 * 9 7 5 12 12 H 1.48493 * 109.47181 * 330.00191 * 9 7 5 13 13 C 1.34775 * 120.00035 * 94.44422 * 3 2 1 14 14 O 1.21365 * 120.00117 * 354.75673 * 13 3 2 15 15 C 1.49319 * 120.00031 * 174.76208 * 13 3 2 16 16 O 1.21398 * 120.00175 * 354.45815 * 15 13 3 17 17 N 1.34779 * 120.00186 * 174.45957 * 15 13 3 18 18 C 1.39907 * 120.00204 * 174.21528 * 17 15 13 19 19 C 1.38545 * 120.53376 * 340.87398 * 18 17 15 20 20 N 1.31983 * 120.74083 * 180.02562 * 19 18 17 21 21 C 1.32002 * 121.98008 * 0.02562 * 20 19 18 22 22 C 1.37966 * 120.99967 * 0.02562 * 21 20 19 23 23 C 1.39370 * 119.13802 * 359.68122 * 22 21 20 24 24 S 1.76201 * 120.89265 * 180.29637 * 23 22 21 25 25 C 1.81395 * 103.00286 * 0.28732 * 24 23 22 26 26 H 1.08994 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47470 * 300.00099 * 1 2 3 28 28 H 1.09003 * 109.47577 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47049 * 240.00027 * 2 1 3 30 30 H 1.08999 * 109.47123 * 119.99863 * 2 1 3 31 31 H 1.09002 * 109.46948 * 24.02126 * 4 3 2 32 32 H 1.08996 * 109.47309 * 144.02611 * 4 3 2 33 33 H 0.96994 * 120.00279 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99680 * 353.93423 * 17 15 13 35 35 H 1.07998 * 119.63306 * 0.03856 * 19 18 17 36 36 H 1.07997 * 119.49741 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.42919 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47554 * 60.00060 * 25 24 23 39 39 H 1.08995 * 109.47601 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47314 * 300.00059 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1698 2.1047 -1.2649 5 6 3.5981 2.0019 -1.7343 6 1 4.3209 1.4530 -1.1488 7 6 3.9826 2.6095 -2.9108 8 7 3.1027 3.2783 -3.6236 9 14 5.7533 2.4826 -3.4923 10 1 5.9070 1.2818 -4.3523 11 1 6.1070 3.6971 -4.2703 12 1 6.6534 2.3681 -2.3169 13 6 2.3282 1.9865 1.1637 14 8 2.1135 1.4228 2.2168 15 6 2.9354 3.3506 1.1572 16 8 3.2429 3.8732 0.1055 17 7 3.1423 4.0017 2.3190 18 6 3.8203 5.2255 2.3240 19 6 4.6167 5.5933 1.2517 20 7 5.2585 6.7466 1.2523 21 6 5.1738 7.5932 2.2615 22 6 4.4033 7.3041 3.3688 23 6 3.7016 6.1007 3.4119 24 16 2.6975 5.6881 4.7998 25 6 2.8924 7.1272 5.8867 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5090 1.6688 -2.0142 32 1 1.9104 3.1530 -1.1173 33 1 3.3730 3.7054 -4.4514 34 1 2.8175 3.6237 3.1513 35 1 4.7133 4.9290 0.4057 36 1 5.7166 8.5260 2.2201 37 1 4.3409 8.0034 4.1895 38 1 2.5458 8.0223 5.3703 39 1 2.3054 6.9801 6.7932 40 1 3.9437 7.2439 6.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615079824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = -8.082807 kcal Electronic energy + Delta-G solvation = -25330.951089 eV Core-core repulsion = 21659.292775 eV Total energy + Delta-G solvation = -3671.658314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88419 -39.60069 -37.97611 -35.89025 -34.64585 -32.65882 -32.36902 -30.56467 -30.01505 -29.21773 -27.10352 -25.20229 -24.02463 -23.17839 -23.02871 -21.36471 -19.44429 -18.19653 -17.45130 -17.12834 -16.56413 -16.11273 -15.89078 -15.49550 -15.16126 -14.87731 -14.38403 -14.26632 -14.18474 -13.87018 -13.75099 -13.61967 -13.22071 -13.01708 -12.86083 -12.52268 -12.34066 -12.02571 -11.69230 -11.49730 -11.12430 -10.93398 -10.80785 -10.70078 -10.63890 -10.48720 -10.24474 -9.98551 -9.69759 -9.39502 -8.77586 -8.46964 -8.29492 -7.92522 -7.58046 -6.02601 -4.04727 0.99266 1.12112 1.17305 2.06073 2.10065 2.71983 3.33175 3.41123 3.44158 3.67201 3.94240 3.98014 4.46516 4.63581 4.68515 4.71984 4.73531 4.86643 4.97121 5.17274 5.31127 5.34419 5.49280 5.55836 5.66518 5.69176 5.77771 6.05434 6.13504 6.22584 6.26945 6.53474 6.64628 6.88571 7.23510 7.31574 7.43105 7.85253 8.00240 8.08848 8.17083 8.24123 8.57912 8.94239 9.58058 11.06339 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.004824 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.195242 B = 5803.126166 C = 7774.814699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.556 5.556 4 C 0.231 3.769 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.509 3.491 14 O -0.557 6.557 15 C 0.487 3.513 16 O -0.419 6.419 17 N -0.648 5.648 18 C 0.134 3.866 19 C 0.101 3.899 20 N -0.461 5.461 21 C 0.084 3.916 22 C -0.167 4.167 23 C -0.091 4.091 24 S -0.100 6.100 25 C -0.143 4.143 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.418 0.582 35 H 0.197 0.803 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 5.497 16.030 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.112 3.888 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.439 6.439 15 C 0.269 3.731 16 O -0.286 6.286 17 N -0.296 5.296 18 C 0.029 3.971 19 C -0.060 4.060 20 N -0.171 5.171 21 C -0.075 4.075 22 C -0.193 4.193 23 C -0.215 4.215 24 S 0.140 5.860 25 C -0.312 4.312 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.213 0.787 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.862 4.843 15.103 15.969 hybrid contribution 1.090 0.866 0.514 1.484 sum -0.773 5.709 15.616 16.645 Atomic orbital electron populations 1.22105 0.96148 1.01656 1.02315 1.21453 0.94018 0.82590 1.03136 1.48311 1.58643 1.13569 1.08122 1.19891 0.97884 0.93055 0.77954 1.21165 0.94333 1.33298 1.06503 0.92711 1.24784 0.97258 0.94731 0.96398 1.69904 1.33955 1.34030 1.14971 0.86586 0.85142 0.77432 0.78787 1.20841 1.21052 1.19921 1.19558 0.80391 0.86233 0.84727 1.90670 1.55652 1.66560 1.30992 1.20598 0.81397 0.87710 0.83412 1.90941 1.43561 1.65208 1.28911 1.43292 1.55689 1.19149 1.11434 1.18479 0.95986 0.86884 0.95759 1.23853 0.90264 0.93985 0.97930 1.67924 1.19778 1.02886 1.26524 1.22631 0.96892 0.99022 0.88965 1.21862 1.00253 0.95986 1.01197 1.21899 1.03398 0.97325 0.98841 1.85511 1.58717 1.28005 1.13783 1.23695 1.06305 0.99346 1.01865 0.91975 0.92672 0.92180 0.89779 0.90494 0.94697 0.92321 0.92785 0.74357 0.78671 0.82657 0.84723 0.89497 0.87149 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.92 6.11 -4.04 -0.02 1.89 16 3 N -0.56 -11.60 2.47 -175.62 -0.43 -12.03 16 4 C 0.23 5.60 4.78 -5.19 -0.02 5.58 16 5 C -0.51 -13.70 7.64 -34.44 -0.26 -13.96 16 6 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 8 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.50 7.67 -11.65 -0.09 10.41 16 14 O -0.56 -11.47 16.07 5.48 0.09 -11.38 16 15 C 0.49 9.87 7.54 -11.65 -0.09 9.78 16 16 O -0.42 -9.70 9.03 5.45 0.05 -9.65 16 17 N -0.65 -11.17 5.24 -10.06 -0.05 -11.22 16 18 C 0.13 2.24 6.54 -83.35 -0.55 1.70 16 19 C 0.10 1.87 9.97 -17.37 -0.17 1.70 16 20 N -0.46 -7.96 10.36 -13.18 -0.14 -8.10 16 21 C 0.08 1.10 11.17 -17.58 -0.20 0.91 16 22 C -0.17 -1.95 9.43 -39.26 -0.37 -2.32 16 23 C -0.09 -1.25 6.18 -38.45 -0.24 -1.49 16 24 S -0.10 -1.11 21.37 -107.50 -2.30 -3.41 16 25 C -0.14 -0.95 9.19 101.05 0.93 -0.02 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.08 1.29 7.37 -51.93 -0.38 0.91 16 31 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 32 H 0.06 1.55 5.98 -51.93 -0.31 1.24 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.42 6.60 7.13 -40.82 -0.29 6.31 16 35 H 0.20 4.17 5.40 -52.49 -0.28 3.89 16 36 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.10 6.07 -52.49 -0.32 0.78 16 38 H 0.09 0.51 7.81 -51.92 -0.41 0.11 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.49 7.78 -51.92 -0.40 0.08 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -31.12 351.02 -7.47 -38.59 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.89 Total: 6.13 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: -0.80 Total: 13.98 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.11 Total: -56.12 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.14 Total: -21.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.30 Total: -3.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.12 -7.47 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615079824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.506 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds