Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.46501 * 120.00252 * 274.44034 * 3 2 1 5 5 C 1.50697 * 109.47117 * 264.03000 * 4 3 2 6 6 H 1.08007 * 120.00228 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00164 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46946 * 89.99835 * 9 7 5 11 11 H 1.48501 * 109.47007 * 209.99621 * 9 7 5 12 12 H 1.48493 * 109.47181 * 330.00191 * 9 7 5 13 13 C 1.34775 * 120.00035 * 94.44422 * 3 2 1 14 14 O 1.21365 * 120.00117 * 354.75673 * 13 3 2 15 15 C 1.49319 * 120.00031 * 174.76208 * 13 3 2 16 16 O 1.21398 * 120.00175 * 354.45815 * 15 13 3 17 17 N 1.34779 * 120.00186 * 174.45957 * 15 13 3 18 18 C 1.39907 * 120.00204 * 174.21528 * 17 15 13 19 19 C 1.38545 * 120.53376 * 340.87398 * 18 17 15 20 20 N 1.31983 * 120.74083 * 180.02562 * 19 18 17 21 21 C 1.32002 * 121.98008 * 0.02562 * 20 19 18 22 22 C 1.37966 * 120.99967 * 0.02562 * 21 20 19 23 23 C 1.39370 * 119.13802 * 359.68122 * 22 21 20 24 24 S 1.76201 * 120.89265 * 180.29637 * 23 22 21 25 25 C 1.81395 * 103.00286 * 0.28732 * 24 23 22 26 26 H 1.08994 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47470 * 300.00099 * 1 2 3 28 28 H 1.09003 * 109.47577 * 59.99950 * 1 2 3 29 29 H 1.08996 * 109.47049 * 240.00027 * 2 1 3 30 30 H 1.08999 * 109.47123 * 119.99863 * 2 1 3 31 31 H 1.09002 * 109.46948 * 24.02126 * 4 3 2 32 32 H 1.08996 * 109.47309 * 144.02611 * 4 3 2 33 33 H 0.96994 * 120.00279 * 180.02562 * 8 7 5 34 34 H 0.97006 * 119.99680 * 353.93423 * 17 15 13 35 35 H 1.07998 * 119.63306 * 0.03856 * 19 18 17 36 36 H 1.07997 * 119.49741 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.42919 * 179.97438 * 22 21 20 38 38 H 1.09003 * 109.47554 * 60.00060 * 25 24 23 39 39 H 1.08995 * 109.47601 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47314 * 300.00059 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1698 2.1047 -1.2649 5 6 3.5981 2.0019 -1.7343 6 1 4.3209 1.4530 -1.1488 7 6 3.9826 2.6095 -2.9108 8 7 3.1027 3.2783 -3.6236 9 14 5.7533 2.4826 -3.4923 10 1 5.9070 1.2818 -4.3523 11 1 6.1070 3.6971 -4.2703 12 1 6.6534 2.3681 -2.3169 13 6 2.3282 1.9865 1.1637 14 8 2.1135 1.4228 2.2168 15 6 2.9354 3.3506 1.1572 16 8 3.2429 3.8732 0.1055 17 7 3.1423 4.0017 2.3190 18 6 3.8203 5.2255 2.3240 19 6 4.6167 5.5933 1.2517 20 7 5.2585 6.7466 1.2523 21 6 5.1738 7.5932 2.2615 22 6 4.4033 7.3041 3.3688 23 6 3.7016 6.1007 3.4119 24 16 2.6975 5.6881 4.7998 25 6 2.8924 7.1272 5.8867 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5090 1.6688 -2.0142 32 1 1.9104 3.1530 -1.1173 33 1 3.3730 3.7054 -4.4514 34 1 2.8175 3.6237 3.1513 35 1 4.7133 4.9290 0.4057 36 1 5.7166 8.5260 2.2201 37 1 4.3409 8.0034 4.1895 38 1 2.5458 8.0223 5.3703 39 1 2.3054 6.9801 6.7932 40 1 3.9437 7.2439 6.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615079824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = -28.793524 kcal Electronic energy + Delta-G solvation = -25331.849173 eV Core-core repulsion = 21659.292775 eV Total energy + Delta-G solvation = -3672.556398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32484 -40.98660 -39.50004 -37.51749 -36.11235 -34.67396 -33.46907 -32.08421 -31.26857 -29.78566 -29.05361 -26.65612 -25.22251 -25.00965 -24.41015 -22.75813 -20.93172 -19.44396 -18.81753 -18.61595 -18.52476 -17.55995 -17.32563 -16.81693 -16.53545 -16.40486 -16.05835 -15.52891 -15.42179 -15.18620 -14.78015 -14.52050 -14.48488 -14.34817 -14.29133 -13.88816 -13.56157 -13.44437 -13.24486 -13.15790 -12.71914 -12.65573 -12.46231 -12.30169 -12.07786 -11.80730 -11.69054 -11.50409 -11.37773 -10.62960 -10.54187 -10.24670 -9.70902 -9.55470 -8.59016 -8.13844 -6.21121 -0.23106 -0.03145 0.28978 0.56957 1.24141 1.35270 1.38209 1.42144 1.49958 2.11849 2.38168 2.53010 2.70429 3.20954 3.27509 3.56978 3.61922 3.84507 4.08795 4.15201 4.29954 4.30317 4.34482 4.47637 4.51352 4.59872 4.74817 4.77941 4.88903 4.94191 5.01428 5.04248 5.24289 5.35367 5.51680 5.62449 5.75320 5.94236 6.10652 6.25331 6.61867 6.80357 6.93858 7.01211 7.44593 8.94573 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.004824 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.195242 B = 5803.126166 C = 7774.814699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.562 5.562 4 C 0.251 3.749 5 C -0.514 4.514 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.507 3.493 14 O -0.556 6.556 15 C 0.485 3.515 16 O -0.457 6.457 17 N -0.633 5.633 18 C 0.106 3.894 19 C 0.073 3.927 20 N -0.495 5.495 21 C 0.088 3.912 22 C -0.150 4.150 23 C -0.085 4.085 24 S -0.124 6.124 25 C -0.135 4.135 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.425 0.575 35 H 0.157 0.843 36 H 0.196 0.804 37 H 0.183 0.817 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 6.722 18.828 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.292 5.292 4 C 0.131 3.869 5 C -0.553 4.553 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.561 5.561 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.289 3.711 14 O -0.438 6.438 15 C 0.267 3.733 16 O -0.327 6.327 17 N -0.281 5.281 18 C 0.002 3.998 19 C -0.086 4.086 20 N -0.206 5.206 21 C -0.071 4.071 22 C -0.177 4.177 23 C -0.208 4.208 24 S 0.117 5.883 25 C -0.302 4.302 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.174 0.826 36 H 0.212 0.788 37 H 0.200 0.800 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.689 6.031 17.948 19.010 hybrid contribution 1.018 0.624 -0.102 1.199 sum -0.671 6.655 17.846 19.058 Atomic orbital electron populations 1.22032 0.93975 1.03637 1.01569 1.21726 0.95823 0.80653 1.03615 1.48293 1.59049 1.14796 1.07034 1.19387 0.96418 0.92092 0.79028 1.21324 0.95200 1.32547 1.06184 0.93661 1.25456 1.00584 0.94617 0.96757 1.70001 1.35540 1.35144 1.15427 0.85724 0.81007 0.77728 0.78187 1.19321 1.21107 1.20299 1.19680 0.80254 0.86482 0.84679 1.90651 1.55742 1.66681 1.30687 1.20618 0.81128 0.87677 0.83876 1.90949 1.45419 1.66021 1.30290 1.43067 1.55103 1.19370 1.10601 1.18488 0.96978 0.87398 0.96949 1.23250 0.92565 0.94730 0.98023 1.67850 1.20751 1.03137 1.28853 1.23361 0.96400 0.99231 0.88127 1.22382 0.98013 0.95530 1.01743 1.22198 1.02970 0.97058 0.98575 1.85710 1.57689 1.31418 1.13523 1.23913 1.08083 0.97048 1.01196 0.88599 0.93230 0.93029 0.89523 0.89729 0.95578 0.94722 0.92828 0.73579 0.82618 0.78754 0.79987 0.88021 0.84994 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.10 3.56 6.11 86.38 0.53 4.09 16 3 N -0.56 -24.13 2.47 -827.90 -2.05 -26.18 16 4 C 0.25 12.75 4.78 85.63 0.41 13.16 16 5 C -0.51 -28.44 7.64 25.60 0.20 -28.25 16 6 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 7 C 0.03 1.43 5.46 84.65 0.46 1.90 16 8 N -0.92 -54.61 13.29 21.45 0.28 -54.32 16 9 Si 0.95 45.55 29.54 68.60 2.03 47.57 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.51 21.58 7.67 87.23 0.67 22.25 16 14 O -0.56 -23.01 16.07 -3.29 -0.05 -23.06 16 15 C 0.48 20.79 7.54 87.23 0.66 21.44 16 16 O -0.46 -22.77 9.03 -3.40 -0.03 -22.80 16 17 N -0.63 -22.69 5.24 -304.08 -1.59 -24.28 16 18 C 0.11 3.63 6.54 38.38 0.25 3.88 16 19 C 0.07 2.90 9.97 84.74 0.84 3.74 16 20 N -0.50 -17.35 10.36 -195.60 -2.03 -19.37 16 21 C 0.09 2.12 11.17 84.60 0.94 3.06 16 22 C -0.15 -3.00 9.43 22.48 0.21 -2.79 16 23 C -0.08 -2.19 6.18 23.00 0.14 -2.04 16 24 S -0.12 -2.44 21.37 -56.49 -1.21 -3.65 16 25 C -0.13 -1.11 9.19 113.37 1.04 -0.07 16 26 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 30 H 0.08 2.79 7.37 -2.39 -0.02 2.77 16 31 H 0.03 1.36 8.03 -2.39 -0.02 1.35 16 32 H 0.03 1.96 5.98 -2.39 -0.01 1.94 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.42 13.66 7.13 -92.70 -0.66 12.99 16 35 H 0.16 7.36 5.40 -2.91 -0.02 7.34 16 36 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.18 1.86 6.07 -2.91 -0.02 1.84 16 38 H 0.10 0.63 7.81 -2.39 -0.02 0.61 16 39 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.58 7.78 -2.39 -0.02 0.56 16 Total: -1.00 -71.78 351.02 2.87 -68.91 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.42 Total: 20.50 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: 7.10 Total: 36.68 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.38 Total: -124.15 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.08 Total: -45.86 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -1.21 Total: -3.65 kcal Total: -71.78 2.87 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615079824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.116 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds