Wall clock time and date at job start Tue Mar 31 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47277 * 2 1 4 4 N 1.46499 * 109.47037 * 120.00551 * 2 1 3 5 5 C 1.34778 * 119.99742 * 274.99289 * 4 2 1 6 6 O 1.21282 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99987 * 179.97438 * 5 4 2 8 8 H 1.08995 * 109.47353 * 300.00130 * 7 5 4 9 9 C 1.53002 * 109.47163 * 60.00889 * 7 5 4 10 10 C 1.50705 * 109.47151 * 180.02562 * 7 5 4 11 11 H 1.08005 * 119.99998 * 0.02562 * 10 7 5 12 12 C 1.37874 * 120.00103 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00044 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00011 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47249 * 120.00223 * 14 12 10 17 17 H 1.48502 * 109.47396 * 240.00344 * 14 12 10 18 18 C 1.50706 * 109.47030 * 240.00005 * 2 1 3 19 19 C 1.37971 * 119.87252 * 264.98203 * 18 2 1 20 20 C 1.38341 * 120.33644 * 180.02562 * 19 18 2 21 21 Cl 1.73598 * 120.12726 * 180.19387 * 20 19 18 22 22 C 1.38486 * 119.73935 * 0.17491 * 20 19 18 23 23 C 1.37626 * 119.99615 * 0.02562 * 22 20 19 24 24 C 1.39007 * 120.78537 * 359.62172 * 23 22 20 25 25 O 1.36157 * 111.25056 * 180.61911 * 24 23 22 26 26 C 1.43763 * 109.28708 * 341.40492 * 25 24 23 27 27 C 1.51649 * 132.23226 * 179.65428 * 23 22 20 28 28 H 1.08994 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46632 * 299.99746 * 1 2 3 30 30 H 1.09003 * 109.46781 * 59.99957 * 1 2 3 31 31 H 0.96998 * 120.00229 * 95.00136 * 4 2 1 32 32 H 1.08999 * 109.47478 * 179.97438 * 9 7 5 33 33 H 1.09000 * 109.46303 * 300.00144 * 9 7 5 34 34 H 1.09003 * 109.47271 * 59.99355 * 9 7 5 35 35 H 0.97004 * 120.00502 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.82712 * 0.05624 * 19 18 2 37 37 H 1.08005 * 120.01677 * 180.02562 * 22 20 19 38 38 H 1.08996 * 110.74903 * 269.23367 * 26 25 24 39 39 H 1.09001 * 110.90078 * 145.95843 * 26 25 24 40 40 H 1.09002 * 110.94508 * 77.51581 * 27 23 22 41 41 H 1.08997 * 110.93949 * 313.85905 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0184 2.3571 6 8 1.8585 1.1583 2.4117 7 6 2.6490 -0.7290 3.5876 8 1 1.9760 -1.5507 3.8325 9 6 4.0514 -1.2800 3.3222 10 6 2.6993 0.2392 4.7414 11 1 2.3977 1.2664 4.5980 12 6 3.1304 -0.1861 5.9800 13 7 3.4982 -1.4367 6.1545 14 14 3.1935 1.0142 7.4099 15 1 2.7314 2.3503 6.9555 16 1 2.3105 0.5305 8.5016 17 1 4.5882 1.1159 7.9098 18 6 2.0324 -0.7104 -1.2305 19 6 2.3601 -2.0491 -1.1655 20 6 2.8227 -2.7106 -2.2890 21 17 3.2287 -4.3962 -2.2023 22 6 2.9601 -2.0229 -3.4832 23 6 2.6376 -0.6866 -3.5487 24 6 2.1650 -0.0130 -2.4283 25 8 1.8952 1.2907 -2.7136 26 6 2.5766 1.6629 -3.9236 27 6 2.6856 0.3192 -4.6827 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.2491 -1.6319 1.1525 32 1 4.4146 -1.7936 4.2124 33 1 4.0146 -1.9803 2.4877 34 1 4.7244 -0.4582 3.0773 35 1 3.8018 -1.7359 7.0259 36 1 2.2545 -2.5833 -0.2328 37 1 3.3204 -2.5350 -4.3632 38 1 3.5661 2.0627 -3.7022 39 1 1.9898 2.3824 -4.4948 40 1 1.8417 0.1843 -5.3592 41 1 3.6300 0.2525 -5.2228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886700205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:04 Heat of formation + Delta-G solvation = -55.089928 kcal Electronic energy + Delta-G solvation = -24978.355541 eV Core-core repulsion = 21270.322387 eV Total energy + Delta-G solvation = -3708.033153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49976 -39.13367 -37.97769 -36.51961 -35.21503 -33.69118 -32.58195 -31.19706 -30.03477 -29.46193 -28.80994 -25.09878 -24.40988 -23.55276 -22.48191 -22.30582 -20.39965 -19.42871 -17.62475 -17.10926 -16.80721 -16.42535 -16.11945 -15.62931 -15.15047 -14.47799 -14.38621 -14.16675 -13.83588 -13.60029 -13.45100 -13.25648 -13.12171 -12.75264 -12.55955 -12.26088 -12.12875 -11.97770 -11.92616 -11.60612 -11.43436 -11.20076 -10.99269 -10.76258 -10.68601 -10.65683 -10.60491 -10.21520 -9.92580 -9.13157 -8.92487 -8.58993 -8.50128 -8.29298 -8.23283 -5.99794 -4.02594 0.87516 0.92491 1.92932 2.95345 3.26507 3.34784 3.42224 3.50627 3.76729 3.84136 4.02024 4.21707 4.42074 4.50636 4.64489 4.75957 4.88819 5.03876 5.10773 5.31306 5.31856 5.33618 5.38380 5.52632 5.63954 5.70061 5.83949 5.90622 6.00971 6.09016 6.13687 6.38628 6.44171 6.65785 6.81345 6.86868 6.96443 7.11156 7.51318 7.79235 8.02223 8.17537 8.47092 9.06941 9.27248 9.62942 11.07884 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.003394 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.039725 B = 8247.376772 C = 9503.206962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.187 3.813 3 H 0.098 0.902 4 N -0.744 5.744 5 C 0.522 3.478 6 O -0.543 6.543 7 C 0.028 3.972 8 H 0.053 0.947 9 C -0.132 4.132 10 C -0.499 4.499 11 H 0.075 0.925 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.086 4.086 19 C -0.070 4.070 20 C -0.057 4.057 21 Cl -0.064 7.064 22 C -0.065 4.065 23 C -0.164 4.164 24 C 0.122 3.878 25 O -0.294 6.294 26 C 0.050 3.950 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.393 0.607 32 H 0.093 0.907 33 H 0.011 0.989 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -2.644 -24.170 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 H 0.116 0.884 4 N -0.400 5.400 5 C 0.312 3.688 6 O -0.418 6.418 7 C 0.007 3.993 8 H 0.070 0.930 9 C -0.190 4.190 10 C -0.537 4.537 11 H 0.093 0.907 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.087 4.087 19 C -0.089 4.089 20 C -0.084 4.084 21 Cl -0.035 7.035 22 C -0.084 4.084 23 C -0.165 4.165 24 C 0.075 3.925 25 O -0.207 6.207 26 C -0.025 4.025 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.112 0.888 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.534 -1.849 -23.837 23.958 hybrid contribution 0.353 -0.198 0.523 0.661 sum -1.181 -2.047 -23.314 23.434 Atomic orbital electron populations 1.22135 0.94412 1.02065 1.02651 1.19532 0.94034 0.96923 0.81389 0.88435 1.46534 1.69990 1.13895 1.09584 1.21986 0.75027 0.87514 0.84297 1.90532 1.49541 1.16875 1.84891 1.18888 0.94677 0.96618 0.89072 0.92957 1.21741 0.97827 0.98693 1.00742 1.21192 1.42935 0.97047 0.92528 0.90707 1.24947 0.95259 0.95325 0.98751 1.69880 1.45121 1.15194 1.23450 0.86414 0.77495 0.81521 0.81925 1.19560 1.21085 1.21089 1.19216 1.03357 0.93182 0.92957 1.20585 0.97581 0.92750 0.98027 1.20547 1.06287 0.86293 0.95293 1.98375 1.92446 1.14124 1.98584 1.20024 0.99307 0.92174 0.96875 1.20610 1.06005 0.94738 0.95150 1.19305 0.95464 0.84468 0.93225 1.86904 1.66540 1.23757 1.43541 1.23884 0.98305 0.96951 0.83387 1.21797 1.04249 0.91815 0.96526 0.92543 0.91171 0.92052 0.77075 0.88819 0.96980 0.95018 0.93063 0.83913 0.84744 0.90200 0.87303 0.88855 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.47 37.16 0.35 -1.91 16 2 C 0.19 2.98 2.75 -69.08 -0.19 2.79 16 3 H 0.10 1.79 7.55 -51.93 -0.39 1.40 16 4 N -0.74 -13.26 4.89 -54.93 -0.27 -13.53 16 5 C 0.52 12.00 7.11 -10.99 -0.08 11.92 16 6 O -0.54 -14.24 15.12 5.56 0.08 -14.15 16 7 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 8 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 9 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 10 C -0.50 -14.26 8.38 -34.44 -0.29 -14.55 16 11 H 0.07 2.27 6.75 -52.48 -0.35 1.91 16 12 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 13 N -0.90 -25.33 11.32 55.43 0.63 -24.71 16 14 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.09 -1.16 5.08 -104.35 -0.53 -1.69 16 19 C -0.07 -0.87 9.00 -39.64 -0.36 -1.23 16 20 C -0.06 -0.64 6.33 -39.45 -0.25 -0.89 16 21 Cl -0.06 -0.67 28.97 -51.86 -1.50 -2.18 16 22 C -0.07 -0.64 9.82 -39.71 -0.39 -1.03 16 23 C -0.16 -1.66 6.27 -104.09 -0.65 -2.32 16 24 C 0.12 1.52 6.75 -38.92 -0.26 1.26 16 25 O -0.29 -3.57 11.05 -20.24 -0.22 -3.79 16 26 C 0.05 0.38 8.01 38.06 0.30 0.68 16 27 C -0.11 -0.72 7.11 -26.52 -0.19 -0.91 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.39 6.14 5.61 -40.82 -0.23 5.91 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.14 1.68 6.04 -52.49 -0.32 1.36 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -32.21 354.31 -8.87 -41.07 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.36 Total: 3.60 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.54 Total: -8.63 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.36 Total: -38.23 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.14 Total: -17.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.21 -8.87 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886700205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.017 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds