Wall clock time and date at job start Tue Mar 31 2020 14:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.50702 * 109.47251 * 240.00748 * 2 1 3 5 5 H 1.07998 * 119.99610 * 239.99621 * 4 2 1 6 6 C 1.37873 * 120.00039 * 59.99015 * 4 2 1 7 7 N 1.31509 * 120.00525 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46962 * 120.00331 * 8 6 4 11 11 H 1.48501 * 109.47256 * 240.00481 * 8 6 4 12 12 C 1.50697 * 109.47427 * 120.00065 * 2 1 3 13 13 O 1.21285 * 119.99744 * 120.00306 * 12 2 1 14 14 N 1.34778 * 120.00382 * 300.00652 * 12 2 1 15 15 C 1.46491 * 120.00172 * 180.02562 * 14 12 2 16 16 H 1.09004 * 109.47117 * 327.20174 * 15 14 12 17 17 C 1.52996 * 109.47397 * 87.20565 * 15 14 12 18 18 C 1.50705 * 109.47026 * 207.20661 * 15 14 12 19 19 C 1.37971 * 119.86961 * 332.68589 * 18 15 14 20 20 C 1.38340 * 120.33752 * 180.02562 * 19 18 15 21 21 Cl 1.73606 * 120.12806 * 180.13082 * 20 19 18 22 22 C 1.38489 * 119.74121 * 0.15005 * 20 19 18 23 23 C 1.37701 * 119.96605 * 359.97438 * 22 20 19 24 24 C 1.38923 * 120.80178 * 359.70636 * 23 22 20 25 25 O 1.36152 * 111.23628 * 180.48883 * 24 23 22 26 26 C 1.43766 * 109.28193 * 341.36591 * 25 24 23 27 27 C 1.51648 * 132.16697 * 179.51052 * 23 22 20 28 28 H 1.08998 * 109.47457 * 299.99251 * 1 2 3 29 29 H 1.08995 * 109.47656 * 60.00044 * 1 2 3 30 30 H 1.09009 * 109.46925 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00607 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99572 * 359.97438 * 14 12 2 33 33 H 1.09007 * 109.46894 * 179.97438 * 17 15 14 34 34 H 1.09001 * 109.47166 * 299.99977 * 17 15 14 35 35 H 1.09006 * 109.47273 * 60.00269 * 17 15 14 36 36 H 1.08002 * 119.82991 * 0.02743 * 19 18 15 37 37 H 1.07996 * 120.01702 * 179.97438 * 22 20 19 38 38 H 1.09000 * 110.74450 * 145.90536 * 26 25 24 39 39 H 1.08999 * 110.75124 * 269.24950 * 26 25 24 40 40 H 1.09001 * 110.94016 * 314.01585 * 27 23 22 41 41 H 1.09003 * 110.93686 * 77.66710 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3225 -1.1192 -4.0081 9 1 3.1476 -2.2859 -3.6040 10 1 1.1678 -1.5863 -4.8166 11 1 3.1472 -0.1853 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4546 15 6 2.1957 -0.9404 3.6506 16 1 2.2700 -2.0089 3.4485 17 6 3.5749 -0.3952 4.0262 18 6 1.2370 -0.7103 4.7905 19 6 0.4648 0.4327 4.8188 20 6 -0.4179 0.6540 5.8607 21 17 -1.3895 2.0925 5.8891 22 6 -0.5232 -0.2762 6.8812 23 6 0.2490 -1.4161 6.8553 24 6 1.1340 -1.6521 5.8108 25 8 1.7869 -2.8355 5.9755 26 6 1.6888 -3.2445 7.3502 27 6 0.3647 -2.5892 7.8092 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 0.7092 1.1619 -3.4843 32 1 1.1493 0.5387 2.5436 33 1 3.9384 -0.9085 4.9165 34 1 4.2683 -0.5616 3.2018 35 1 3.5006 0.6734 4.2284 36 1 0.5498 1.1584 4.0234 37 1 -1.2105 -0.1078 7.6970 38 1 1.6292 -4.3301 7.4268 39 1 2.5298 -2.8613 7.9281 40 1 0.4369 -2.2464 8.8414 41 1 -0.4734 -3.2753 7.6863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886700206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:07 Heat of formation + Delta-G solvation = -55.574478 kcal Electronic energy + Delta-G solvation = -24975.007331 eV Core-core repulsion = 21266.953166 eV Total energy + Delta-G solvation = -3708.054165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50263 -39.12520 -37.97576 -36.51804 -35.21349 -33.68637 -32.58279 -31.19131 -30.02833 -29.46107 -28.82581 -25.09322 -24.39215 -23.56767 -22.49121 -22.30435 -20.37930 -19.42737 -17.63494 -17.10541 -16.82616 -16.41416 -16.11403 -15.63809 -15.14438 -14.44523 -14.30933 -14.19562 -13.82083 -13.66928 -13.51835 -13.26022 -13.03720 -12.73333 -12.57091 -12.27166 -12.16262 -12.03257 -11.93766 -11.58500 -11.40527 -11.18926 -10.98967 -10.76193 -10.69956 -10.66538 -10.59140 -10.20980 -9.92200 -9.12648 -8.92021 -8.58782 -8.48889 -8.29450 -8.23561 -5.99380 -4.02164 0.88005 0.92477 1.93092 2.95654 3.25818 3.35131 3.42537 3.51031 3.77012 3.85518 4.02392 4.21547 4.42539 4.51058 4.63055 4.76430 4.88586 5.03445 5.10505 5.31179 5.31372 5.34005 5.38418 5.51863 5.63584 5.69264 5.82376 5.90409 6.00105 6.08558 6.14254 6.36154 6.44150 6.66537 6.81834 6.87570 6.97067 7.11455 7.51854 7.79771 8.02685 8.18013 8.47602 9.07420 9.27732 9.63372 11.08330 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003391 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.136876 B = 8255.183513 C = 9526.912166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.522 3.478 13 O -0.543 6.543 14 N -0.743 5.743 15 C 0.185 3.815 16 H 0.100 0.900 17 C -0.153 4.153 18 C -0.086 4.086 19 C -0.070 4.070 20 C -0.058 4.058 21 Cl -0.064 7.064 22 C -0.065 4.065 23 C -0.164 4.164 24 C 0.122 3.878 25 O -0.294 6.294 26 C 0.050 3.950 27 C -0.107 4.107 28 H 0.011 0.989 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.393 0.607 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -1.044 24.466 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.312 3.688 13 O -0.418 6.418 14 N -0.399 5.399 15 C 0.080 3.920 16 H 0.118 0.882 17 C -0.212 4.212 18 C -0.087 4.087 19 C -0.089 4.089 20 C -0.084 4.084 21 Cl -0.036 7.036 22 C -0.084 4.084 23 C -0.165 4.165 24 C 0.076 3.924 25 O -0.207 6.207 26 C -0.025 4.025 27 C -0.144 4.144 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.229 0.771 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.731 -1.691 24.062 24.275 hybrid contribution -0.277 0.176 -0.537 0.629 sum -3.008 -1.515 23.524 23.764 Atomic orbital electron populations 1.21740 0.96531 0.99836 1.00894 1.18887 0.94151 0.96860 0.89341 0.92961 1.21192 1.30784 1.12759 0.88968 0.90706 1.24946 0.95154 0.95081 0.99095 1.69876 1.37257 1.23140 1.23379 0.86416 0.78611 0.79798 0.82540 1.19558 1.21091 1.21083 1.21992 0.78318 0.84185 0.84334 1.90533 1.37860 1.26795 1.86660 1.46513 1.55566 1.32538 1.05312 1.19541 0.90907 0.99324 0.82256 0.88244 1.22128 0.96312 1.00872 1.01865 1.19236 1.00259 0.92393 0.96840 1.20583 0.94177 0.96744 0.97385 1.20551 0.98807 0.91170 0.97914 1.98375 1.69871 1.36884 1.98425 1.20045 0.98806 0.91589 0.97931 1.20611 0.99862 0.97335 0.98725 1.19294 0.91981 0.86114 0.95040 1.86916 1.72180 1.33091 1.28550 1.23885 0.97112 1.01288 0.80181 1.21804 0.98719 0.94579 0.99323 0.96972 0.88835 0.95007 0.93063 0.77094 0.92184 0.91208 0.92521 0.83935 0.84742 0.87322 0.90258 0.88793 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.87 37.16 0.33 -2.75 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.76 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 12.04 7.13 -10.99 -0.08 11.96 16 13 O -0.54 -14.30 15.08 5.55 0.08 -14.21 16 14 N -0.74 -13.28 4.87 -54.94 -0.27 -13.55 16 15 C 0.19 2.95 2.78 -69.09 -0.19 2.76 16 16 H 0.10 1.84 7.43 -51.93 -0.39 1.46 16 17 C -0.15 -2.20 9.49 37.16 0.35 -1.84 16 18 C -0.09 -1.16 5.07 -104.35 -0.53 -1.69 16 19 C -0.07 -0.86 8.99 -39.64 -0.36 -1.22 16 20 C -0.06 -0.64 6.33 -39.45 -0.25 -0.89 16 21 Cl -0.06 -0.68 28.97 -51.86 -1.50 -2.18 16 22 C -0.06 -0.64 9.82 -39.69 -0.39 -1.03 16 23 C -0.16 -1.67 6.27 -104.10 -0.65 -2.33 16 24 C 0.12 1.53 6.74 -38.96 -0.26 1.27 16 25 O -0.29 -3.60 11.01 -20.22 -0.22 -3.82 16 26 C 0.05 0.37 8.01 38.05 0.30 0.68 16 27 C -0.11 -0.73 7.12 -26.52 -0.19 -0.92 16 28 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.39 6.14 5.71 -40.82 -0.23 5.91 16 33 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.14 1.66 6.14 -52.49 -0.32 1.34 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -32.39 354.35 -8.87 -41.26 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.37 Total: 3.50 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.54 Total: -8.60 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.36 Total: -38.30 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.14 Total: -18.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.39 -8.87 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886700206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.314 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds