Wall clock time and date at job start Tue Mar 31 2020 14:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46621 * 2 1 4 4 C 1.50702 * 109.47251 * 240.00748 * 2 1 3 5 5 H 1.07998 * 119.99610 * 239.99621 * 4 2 1 6 6 C 1.37873 * 120.00039 * 59.99015 * 4 2 1 7 7 N 1.31509 * 120.00525 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46859 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46962 * 120.00331 * 8 6 4 11 11 H 1.48501 * 109.47256 * 240.00481 * 8 6 4 12 12 C 1.50697 * 109.47427 * 120.00065 * 2 1 3 13 13 O 1.21285 * 119.99744 * 120.00306 * 12 2 1 14 14 N 1.34778 * 120.00382 * 300.00652 * 12 2 1 15 15 C 1.46491 * 120.00172 * 180.02562 * 14 12 2 16 16 H 1.09004 * 109.47117 * 327.20174 * 15 14 12 17 17 C 1.52996 * 109.47397 * 87.20565 * 15 14 12 18 18 C 1.50705 * 109.47026 * 207.20661 * 15 14 12 19 19 C 1.37971 * 119.86961 * 332.68589 * 18 15 14 20 20 C 1.38340 * 120.33752 * 180.02562 * 19 18 15 21 21 Cl 1.73606 * 120.12806 * 180.13082 * 20 19 18 22 22 C 1.38489 * 119.74121 * 0.15005 * 20 19 18 23 23 C 1.37701 * 119.96605 * 359.97438 * 22 20 19 24 24 C 1.38923 * 120.80178 * 359.70636 * 23 22 20 25 25 O 1.36152 * 111.23628 * 180.48883 * 24 23 22 26 26 C 1.43766 * 109.28193 * 341.36591 * 25 24 23 27 27 C 1.51648 * 132.16697 * 179.51052 * 23 22 20 28 28 H 1.08998 * 109.47457 * 299.99251 * 1 2 3 29 29 H 1.08995 * 109.47656 * 60.00044 * 1 2 3 30 30 H 1.09009 * 109.46925 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00607 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99572 * 359.97438 * 14 12 2 33 33 H 1.09007 * 109.46894 * 179.97438 * 17 15 14 34 34 H 1.09001 * 109.47166 * 299.99977 * 17 15 14 35 35 H 1.09006 * 109.47273 * 60.00269 * 17 15 14 36 36 H 1.08002 * 119.82991 * 0.02743 * 19 18 15 37 37 H 1.07996 * 120.01702 * 179.97438 * 22 20 19 38 38 H 1.09000 * 110.74450 * 145.90536 * 26 25 24 39 39 H 1.08999 * 110.75124 * 269.24950 * 26 25 24 40 40 H 1.09001 * 110.94016 * 314.01585 * 27 23 22 41 41 H 1.09003 * 110.93686 * 77.66710 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3225 -1.1192 -4.0081 9 1 3.1476 -2.2859 -3.6040 10 1 1.1678 -1.5863 -4.8166 11 1 3.1472 -0.1853 -4.8161 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4546 15 6 2.1957 -0.9404 3.6506 16 1 2.2700 -2.0089 3.4485 17 6 3.5749 -0.3952 4.0262 18 6 1.2370 -0.7103 4.7905 19 6 0.4648 0.4327 4.8188 20 6 -0.4179 0.6540 5.8607 21 17 -1.3895 2.0925 5.8891 22 6 -0.5232 -0.2762 6.8812 23 6 0.2490 -1.4161 6.8553 24 6 1.1340 -1.6521 5.8108 25 8 1.7869 -2.8355 5.9755 26 6 1.6888 -3.2445 7.3502 27 6 0.3647 -2.5892 7.8092 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 0.7092 1.1619 -3.4843 32 1 1.1493 0.5387 2.5436 33 1 3.9384 -0.9085 4.9165 34 1 4.2683 -0.5616 3.2018 35 1 3.5006 0.6734 4.2284 36 1 0.5498 1.1584 4.0234 37 1 -1.2105 -0.1078 7.6970 38 1 1.6292 -4.3301 7.4268 39 1 2.5298 -2.8613 7.9281 40 1 0.4369 -2.2464 8.8414 41 1 -0.4734 -3.2753 7.6863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886700206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:06 Heat of formation + Delta-G solvation = -75.159681 kcal Electronic energy + Delta-G solvation = -24975.856609 eV Core-core repulsion = 21266.953166 eV Total energy + Delta-G solvation = -3708.903443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32733 -40.73629 -38.98368 -37.49859 -36.43592 -35.75434 -33.66678 -32.73737 -31.49562 -30.24375 -29.95923 -27.20315 -25.56708 -24.65742 -23.67318 -23.33410 -21.57683 -21.03971 -18.61384 -18.36410 -18.12694 -17.75956 -17.23470 -16.96366 -16.65455 -16.21154 -15.84370 -15.19418 -14.98037 -14.87629 -14.67739 -14.48567 -14.21722 -13.83866 -13.79562 -13.49686 -13.40148 -13.24888 -12.97224 -12.78855 -12.66858 -12.59574 -12.58177 -12.44740 -12.24583 -12.18583 -12.02555 -11.68864 -11.43391 -11.03419 -10.61440 -10.33285 -10.14036 -9.89950 -9.10947 -8.14771 -6.24995 0.02521 0.04929 1.09205 1.39487 1.41316 1.55036 1.91345 2.20706 2.26986 2.43403 2.52087 3.14735 3.32056 3.38557 3.72516 3.90946 4.04830 4.09402 4.17798 4.20881 4.30158 4.39162 4.53023 4.68569 4.71457 4.74319 4.78643 4.84022 4.92751 4.93582 4.98437 5.05228 5.08755 5.13820 5.19329 5.34224 5.49278 5.60106 5.74992 5.93338 6.02253 6.20699 6.69965 6.85305 7.39876 7.52270 8.91373 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003391 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.136876 B = 8255.183513 C = 9526.912166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.044 0.956 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.584 6.584 14 N -0.723 5.723 15 C 0.188 3.812 16 H 0.068 0.932 17 C -0.146 4.146 18 C -0.105 4.105 19 C -0.078 4.078 20 C -0.062 4.062 21 Cl -0.059 7.059 22 C -0.058 4.058 23 C -0.160 4.160 24 C 0.107 3.893 25 O -0.323 6.323 26 C 0.041 3.959 27 C -0.100 4.100 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -0.810 26.762 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.062 0.938 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.314 3.686 13 O -0.463 6.463 14 N -0.378 5.378 15 C 0.084 3.916 16 H 0.086 0.914 17 C -0.204 4.204 18 C -0.106 4.106 19 C -0.097 4.097 20 C -0.089 4.089 21 Cl -0.030 7.030 22 C -0.076 4.076 23 C -0.161 4.161 24 C 0.060 3.940 25 O -0.238 6.238 26 C -0.033 4.033 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.146 0.854 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.857 -1.419 26.401 26.719 hybrid contribution 0.041 0.101 -1.140 1.146 sum -3.816 -1.318 25.261 25.582 Atomic orbital electron populations 1.21553 0.95104 0.99325 1.01693 1.18824 0.95280 0.96055 0.89534 0.93830 1.21307 1.31539 1.12705 0.91097 0.93382 1.25586 0.95184 0.95748 1.01380 1.69947 1.37239 1.23550 1.24256 0.85547 0.78355 0.78593 0.79411 1.20514 1.19919 1.19870 1.21579 0.78057 0.83588 0.85415 1.90509 1.39812 1.28549 1.87410 1.46227 1.54503 1.32424 1.04598 1.19509 0.92692 0.97263 0.82160 0.91388 1.22046 0.94750 1.02083 1.01501 1.18993 1.01051 0.93948 0.96633 1.20576 0.94620 0.96450 0.98086 1.20631 0.98622 0.91708 0.97966 1.98378 1.69590 1.36618 1.98406 1.20367 0.98505 0.90763 0.97978 1.21008 0.98491 0.98092 0.98491 1.19488 0.92835 0.86169 0.95478 1.86889 1.72398 1.33006 1.31459 1.24255 0.98201 1.02715 0.78139 1.21920 0.98603 0.93180 0.99979 0.93186 0.90884 0.96033 0.92586 0.75572 0.90422 0.93778 0.90856 0.83909 0.81995 0.85361 0.88838 0.85846 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.87 71.98 0.64 -4.94 16 2 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16 3 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.53 -31.29 8.37 25.60 0.21 -31.07 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.73 11.32 21.44 0.24 -51.49 16 8 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 9 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.52 25.04 7.13 87.66 0.63 25.66 16 13 O -0.58 -32.30 15.08 -3.05 -0.05 -32.34 16 14 N -0.72 -26.27 4.87 -446.11 -2.17 -28.44 16 15 C 0.19 6.15 2.78 44.25 0.12 6.27 16 16 H 0.07 2.66 7.43 -2.39 -0.02 2.64 16 17 C -0.15 -4.23 9.49 71.98 0.68 -3.54 16 18 C -0.10 -2.79 5.07 -19.69 -0.10 -2.89 16 19 C -0.08 -1.84 8.99 22.23 0.20 -1.64 16 20 C -0.06 -1.26 6.33 22.35 0.14 -1.12 16 21 Cl -0.06 -1.11 28.97 -2.72 -0.08 -1.19 16 22 C -0.06 -0.97 9.82 22.20 0.22 -0.75 16 23 C -0.16 -2.83 6.27 -19.52 -0.12 -2.95 16 24 C 0.11 2.56 6.74 22.67 0.15 2.72 16 25 O -0.32 -7.66 11.01 -95.28 -1.05 -8.71 16 26 C 0.04 0.50 8.01 72.56 0.58 1.08 16 27 C -0.10 -1.01 7.12 30.73 0.22 -0.79 16 28 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 29 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 30 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.41 12.58 5.71 -92.71 -0.53 12.05 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 36 H 0.14 3.19 6.14 -2.91 -0.02 3.17 16 37 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -72.26 354.35 3.45 -68.81 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.53 Total: 16.79 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 3.99 Total: -11.14 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.93 Total: -79.93 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.10 Total: -41.06 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -72.26 3.45 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886700206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.351 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds