Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.00185 * 2 1 4 4 C 1.54327 * 109.88163 * 121.09674 * 2 1 3 5 5 H 1.08999 * 110.71922 * 259.97394 * 4 2 1 6 6 N 1.46505 * 110.87231 * 23.17565 * 4 2 1 7 7 C 1.36932 * 119.99974 * 202.45685 * 6 4 2 8 8 H 1.08009 * 119.99919 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00033 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99917 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99941 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47292 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47325 * 120.00179 * 11 9 7 14 14 H 1.48507 * 109.46792 * 240.00074 * 11 9 7 15 15 C 1.55161 * 102.94264 * 141.60988 * 4 2 1 16 16 C 1.54903 * 101.58146 * 324.49570 * 15 4 2 17 17 N 1.47025 * 109.88254 * 238.90101 * 2 1 3 18 18 C 1.34778 * 125.64820 * 61.60913 * 17 2 1 19 19 O 1.21681 * 119.99788 * 356.69491 * 18 17 2 20 20 C 1.46733 * 120.00193 * 176.69167 * 18 17 2 21 21 C 1.34871 * 125.05833 * 186.65769 * 20 18 17 22 22 C 1.38935 * 113.65448 * 179.97438 * 21 20 18 23 23 C 1.47340 * 122.96351 * 179.97438 * 22 21 20 24 24 N 1.34776 * 120.00373 * 180.02562 * 23 22 21 25 25 O 1.21621 * 119.99541 * 0.02562 * 23 22 21 26 26 C 1.36658 * 114.08080 * 359.97438 * 22 21 20 27 27 S 1.70605 * 110.52826 * 359.72597 * 26 22 21 28 28 H 1.08993 * 109.47322 * 298.90773 * 1 2 3 29 29 H 1.09001 * 109.47149 * 58.90701 * 1 2 3 30 30 H 1.08997 * 109.47038 * 178.90007 * 1 2 3 31 31 H 0.97000 * 119.99960 * 22.45404 * 6 4 2 32 32 H 0.96999 * 119.99842 * 180.02562 * 10 9 7 33 33 H 1.08995 * 111.00116 * 82.57484 * 15 4 2 34 34 H 1.09004 * 110.99892 * 206.42091 * 15 4 2 35 35 H 1.09004 * 110.36453 * 155.84889 * 16 15 4 36 36 H 1.08996 * 110.37080 * 278.06184 * 16 15 4 37 37 H 1.07998 * 123.17295 * 0.02562 * 21 20 18 38 38 H 0.96993 * 119.99355 * 359.97438 * 24 23 22 39 39 H 0.96997 * 120.00186 * 179.97438 * 24 23 22 40 40 H 1.07994 * 124.73994 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.3529 -0.0460 2.0201 6 7 1.0489 -1.6854 1.7513 7 6 1.0970 -2.1003 3.0554 8 1 1.8767 -1.7378 3.7090 9 6 0.1435 -2.9866 3.5374 10 7 -0.8069 -3.4279 2.7410 11 14 0.2087 -3.5519 5.3166 12 1 1.3649 -2.9146 5.9965 13 1 -1.0476 -3.1627 6.0060 14 1 0.3611 -5.0284 5.3615 15 6 3.2876 -1.5143 0.6924 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.0918 0.5885 -2.7201 20 6 2.4281 -1.1252 -3.5545 21 6 2.3806 -0.7906 -4.8602 22 6 3.0506 -1.6821 -5.6888 23 6 3.1280 -1.5145 -7.1506 24 7 3.7940 -2.4168 -7.8981 25 8 2.5910 -0.5618 -7.6827 26 6 3.6314 -2.7282 -5.0287 27 16 3.3517 -2.6058 -3.3502 28 1 -0.3633 0.4967 0.8995 29 1 -0.3633 0.5307 -0.8800 30 1 -0.3633 -1.0274 -0.0197 31 1 0.3488 -2.0112 1.1642 32 1 -1.4734 -4.0469 3.0779 33 1 4.1654 -0.8689 0.6605 34 1 3.4851 -2.4111 1.2797 35 1 3.6717 -2.0339 -1.3922 36 1 2.1902 -2.7726 -0.7130 37 1 1.8707 0.0880 -5.2269 38 1 4.2226 -3.1764 -7.4736 39 1 3.8447 -2.3067 -8.8605 40 1 4.1934 -3.5192 -5.5027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987587715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -15.476708 kcal Electronic energy + Delta-G solvation = -24820.723960 eV Core-core repulsion = 21148.745022 eV Total energy + Delta-G solvation = -3671.978938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27276 -39.86864 -37.84536 -36.67586 -34.11372 -34.03986 -31.89857 -30.98450 -30.02950 -28.72695 -25.79552 -25.34858 -24.03666 -23.44909 -21.90933 -20.22527 -19.37743 -19.07247 -18.17227 -17.55755 -17.25489 -16.98347 -16.30713 -15.64898 -15.22219 -14.97961 -14.75563 -14.34493 -14.03594 -13.90065 -13.54469 -13.29556 -13.08841 -12.94893 -12.66896 -12.55120 -12.37690 -11.79422 -11.71932 -11.24022 -11.02569 -10.96579 -10.81476 -10.72411 -10.33352 -10.19550 -10.08399 -10.04590 -9.77934 -9.66265 -9.20833 -9.03031 -8.84688 -8.41881 -7.09603 -5.87336 -3.17495 0.18659 1.19125 1.50622 1.58529 2.98471 2.98945 3.28999 3.32156 3.36772 3.43013 3.45240 4.41383 4.49521 4.60806 4.73712 4.87645 4.97617 5.15674 5.30005 5.47546 5.52193 5.54804 5.61824 5.70332 5.81804 5.88704 5.98539 6.03085 6.22321 6.35709 6.43125 6.43500 6.54893 6.62304 6.79048 6.97291 6.97771 7.61727 7.64631 7.94809 8.23273 8.30670 9.42605 9.96731 10.31770 11.34737 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025041 B = 0.002954 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.889754 B = 9475.055152 C = 9922.132560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 H 0.075 0.925 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.154 4.154 16 C 0.096 3.904 17 N -0.604 5.604 18 C 0.599 3.401 19 O -0.528 6.528 20 C -0.259 4.259 21 C -0.018 4.018 22 C -0.166 4.166 23 C 0.583 3.417 24 N -0.852 5.852 25 O -0.537 6.537 26 C -0.233 4.233 27 S 0.278 5.722 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.389 0.611 32 H 0.256 0.744 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.162 0.838 38 H 0.399 0.601 39 H 0.405 0.595 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 -1.282 -15.398 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.093 0.907 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.196 4.196 16 C -0.028 4.028 17 N -0.337 5.337 18 C 0.387 3.613 19 O -0.406 6.406 20 C -0.380 4.380 21 C -0.049 4.049 22 C -0.184 4.184 23 C 0.367 3.633 24 N -0.415 5.415 25 O -0.414 6.414 26 C -0.372 4.372 27 S 0.548 5.452 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.180 0.820 38 H 0.228 0.772 39 H 0.236 0.764 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 12.879 -1.014 -14.327 19.291 hybrid contribution -0.219 -0.316 -0.847 0.930 sum 12.660 -1.329 -15.174 19.806 Atomic orbital electron populations 1.21945 0.93924 1.03079 1.01992 1.22048 0.95714 0.95626 0.83998 0.90714 1.21206 0.89046 0.91686 0.92067 0.90961 1.42591 1.30916 1.51528 1.10597 1.19266 1.09802 1.21235 0.87280 0.90913 1.24755 0.97663 1.00112 0.98026 1.69668 1.16956 1.36265 1.34755 0.86127 0.77285 0.78149 0.84622 1.20507 1.21848 1.21892 1.23523 0.99583 1.02725 0.93760 1.22518 0.94218 0.89414 0.96665 1.48507 1.51854 1.28558 1.04798 1.16518 0.80841 0.83491 0.80470 1.90821 1.38032 1.28880 1.82907 1.24253 1.12100 1.03408 0.98200 1.20259 0.95342 0.99264 0.90063 1.18966 1.06794 0.98221 0.94393 1.17698 0.77562 0.81882 0.86149 1.43660 1.57679 1.28727 1.11468 1.90856 1.46007 1.30858 1.73704 1.26635 1.04724 1.02379 1.03446 1.83803 1.44031 1.18671 0.98738 0.91239 0.92406 0.91525 0.77452 0.93411 0.91677 0.88941 0.91799 0.89990 0.82041 0.77176 0.76379 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.47 37.16 0.31 -2.50 16 2 C 0.13 2.19 3.45 -66.95 -0.23 1.96 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.17 3.06 3.46 -66.09 -0.23 2.83 16 5 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 6 N -0.71 -16.09 4.62 -51.64 -0.24 -16.32 16 7 C -0.24 -6.21 9.97 -15.06 -0.15 -6.36 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16 11 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 C -0.15 -2.28 6.77 -24.58 -0.17 -2.44 16 16 C 0.10 1.34 5.56 -2.53 -0.01 1.33 16 17 N -0.60 -9.61 3.07 -164.53 -0.50 -10.11 16 18 C 0.60 10.03 7.62 -12.83 -0.10 9.94 16 19 O -0.53 -10.44 15.74 5.21 0.08 -10.35 16 20 C -0.26 -3.56 6.30 -37.35 -0.24 -3.80 16 21 C -0.02 -0.25 9.47 -40.52 -0.38 -0.63 16 22 C -0.17 -1.83 5.82 -106.51 -0.62 -2.45 16 23 C 0.58 6.53 8.06 -12.56 -0.10 6.43 16 24 N -0.85 -5.29 8.84 30.41 0.27 -5.02 16 25 O -0.54 -8.32 17.53 5.26 0.09 -8.23 16 26 C -0.23 -1.88 10.41 30.16 0.31 -1.56 16 27 S 0.28 2.68 18.46 -107.50 -1.98 0.69 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.09 6.80 -51.93 -0.35 0.74 16 30 H 0.07 1.37 6.22 -51.93 -0.32 1.05 16 31 H 0.39 9.50 5.59 -40.82 -0.23 9.27 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.06 0.73 4.90 -27.64 -0.14 0.59 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.16 2.41 7.96 -52.49 -0.42 1.99 16 38 H 0.40 1.25 7.29 -40.82 -0.30 0.95 16 39 H 0.41 1.98 8.93 -40.82 -0.36 1.62 16 40 H 0.17 0.69 6.98 -52.49 -0.37 0.32 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -33.25 342.66 -7.68 -40.93 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.57 Total: 10.49 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.70 Total: 2.41 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.25 Total: -57.28 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.17 Total: -18.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.98 Total: 0.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.25 -7.68 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987587715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.455 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds