Wall clock time and date at job start Tue Mar 31 2020 13:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41477 * 2 1 4 4 C 1.54914 * 110.36609 * 237.70440 * 2 1 3 5 5 C 1.55405 * 101.66697 * 204.23699 * 4 2 1 6 6 H 1.09000 * 110.69068 * 277.04987 * 5 4 2 7 7 N 1.46495 * 110.85076 * 153.69955 * 5 4 2 8 8 C 1.36934 * 119.99717 * 160.08604 * 7 5 4 9 9 H 1.08002 * 120.00471 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99836 * 180.02562 * 8 7 5 11 11 N 1.31613 * 120.00160 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99860 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47550 * 89.99710 * 12 10 8 14 14 H 1.48503 * 109.46790 * 209.99816 * 12 10 8 15 15 H 1.48504 * 109.47100 * 329.99312 * 12 10 8 16 16 C 1.54325 * 102.82616 * 35.33729 * 5 4 2 17 17 N 1.47018 * 107.40412 * 337.97548 * 16 5 4 18 18 C 1.34775 * 125.64993 * 178.90064 * 17 16 5 19 19 O 1.21626 * 120.00252 * 179.97438 * 18 17 16 20 20 C 1.47167 * 119.99739 * 359.97362 * 18 17 16 21 21 C 1.36619 * 125.16220 * 179.72337 * 20 18 17 22 22 C 1.36798 * 114.74541 * 179.78672 * 21 20 18 23 23 C 1.36604 * 114.74377 * 0.50046 * 22 21 20 24 24 C 1.47178 * 125.16287 * 179.70236 * 23 22 21 25 25 N 1.34771 * 120.00465 * 180.02562 * 24 23 22 26 26 O 1.21623 * 119.99631 * 0.02562 * 24 23 22 27 27 S 1.75833 * 125.16387 * 0.02562 * 20 18 17 28 28 H 1.09004 * 109.46570 * 299.15794 * 1 2 3 29 29 H 1.09003 * 109.47239 * 59.15236 * 1 2 3 30 30 H 1.08991 * 109.47514 * 179.16119 * 1 2 3 31 31 H 1.09000 * 111.00339 * 322.23129 * 4 2 1 32 32 H 1.09001 * 111.00161 * 86.07723 * 4 2 1 33 33 H 0.96997 * 120.00433 * 340.08762 * 7 5 4 34 34 H 0.97005 * 120.00291 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.88192 * 218.47989 * 16 5 4 36 36 H 1.09000 * 109.88128 * 97.46841 * 16 5 4 37 37 H 1.08006 * 122.62544 * 0.02562 * 21 20 18 38 38 H 1.08003 * 122.62310 * 180.25177 * 22 21 20 39 39 H 0.97004 * 119.99804 * 0.02562 * 25 24 23 40 40 H 0.96997 * 120.00733 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4795 -1.2034 -0.7346 6 1 4.1975 -0.3952 -0.8738 7 7 3.9254 -2.4187 -1.4204 8 6 5.2569 -2.7372 -1.4528 9 1 5.9783 -2.0922 -0.9731 10 6 5.6795 -3.8885 -2.1031 11 7 4.8005 -4.6742 -2.6881 12 14 7.4957 -4.3233 -2.1467 13 1 7.8320 -5.1633 -0.9692 14 1 7.7950 -5.0743 -3.3923 15 1 8.3038 -3.0778 -2.1134 16 6 3.2493 -1.4769 0.7667 17 7 2.0431 -0.7384 1.1683 18 6 1.4973 -0.7363 2.4005 19 8 0.4938 -0.0851 2.6200 20 6 2.1156 -1.5219 3.4805 21 6 1.6560 -1.5914 4.7652 22 6 2.3936 -2.3909 5.5948 23 6 3.4759 -2.9812 5.0064 24 6 4.4259 -3.8772 5.6851 25 7 5.4616 -4.4035 5.0020 26 8 4.2763 -4.1427 6.8626 27 16 3.5622 -2.5076 3.3152 28 1 -0.3632 0.5007 0.8975 29 1 -0.3634 0.5270 -0.8823 30 1 -0.3634 -1.0274 -0.0150 31 1 1.4510 -1.6480 -1.4409 32 1 2.1398 -0.1264 -2.1001 33 1 3.2777 -2.9978 -1.8516 34 1 5.0958 -5.4789 -3.1422 35 1 4.1065 -1.1281 1.3427 36 1 3.1022 -2.5444 0.9308 37 1 0.7768 -1.0600 5.0987 38 1 2.1422 -2.5402 6.6345 39 1 5.5812 -4.1915 4.0630 40 1 6.0876 -4.9943 5.4492 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989555607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:48 Heat of formation + Delta-G solvation = -21.572657 kcal Electronic energy + Delta-G solvation = -24926.262957 eV Core-core repulsion = 21254.019679 eV Total energy + Delta-G solvation = -3672.243278 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.18289 -39.64603 -37.88342 -36.75516 -34.33057 -33.91787 -32.20104 -31.54592 -29.69618 -28.57623 -26.05781 -25.43254 -24.02509 -22.50470 -21.80150 -20.59984 -20.04568 -19.16851 -17.85558 -17.39315 -17.11734 -16.80177 -16.29644 -15.67648 -15.32384 -15.04191 -14.72661 -14.58628 -14.06178 -13.84431 -13.58940 -13.46314 -13.06757 -12.85920 -12.70171 -12.53220 -12.24972 -12.03227 -11.92261 -11.45786 -11.26620 -11.04789 -10.84369 -10.78017 -10.47873 -10.33129 -10.18184 -9.96752 -9.89240 -9.71131 -9.14178 -9.03788 -8.80872 -8.43836 -7.25275 -5.97976 -3.30080 -0.00041 1.24540 1.63049 1.95803 2.93879 2.95681 3.18984 3.25208 3.28681 3.35561 3.37519 4.35471 4.45869 4.70196 4.90661 5.00114 5.06482 5.10163 5.22076 5.34139 5.42169 5.47858 5.69969 5.73467 5.75552 5.86482 5.93107 5.96061 6.03362 6.11455 6.26192 6.31338 6.33301 6.51488 6.54828 6.68518 7.03441 7.49659 7.55153 7.96159 8.12026 8.18867 9.31122 9.83209 10.18255 11.23541 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.005299 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.362024 B = 5282.251428 C = 8147.934060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.254 4.254 9 H 0.074 0.926 10 C -0.004 4.004 11 N -0.926 5.926 12 Si 0.907 3.093 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.055 3.945 17 N -0.603 5.603 18 C 0.598 3.402 19 O -0.532 6.532 20 C -0.223 4.223 21 C -0.080 4.080 22 C -0.069 4.069 23 C -0.271 4.271 24 C 0.597 3.403 25 N -0.848 5.848 26 O -0.535 6.535 27 S 0.240 5.760 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.388 0.612 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.404 0.596 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 6.069 9.862 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.066 3.934 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.385 4.385 9 H 0.092 0.908 10 C -0.201 4.201 11 N -0.573 5.573 12 Si 0.737 3.263 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.206 1.206 16 C -0.073 4.073 17 N -0.336 5.336 18 C 0.386 3.614 19 O -0.412 6.412 20 C -0.345 4.345 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.393 4.393 24 C 0.382 3.618 25 N -0.411 5.411 26 O -0.413 6.413 27 S 0.510 5.490 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.233 0.767 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.971 5.948 9.532 11.622 hybrid contribution 0.315 -0.525 0.710 0.938 sum -2.657 5.424 10.242 11.890 Atomic orbital electron populations 1.22178 0.93992 1.02724 1.03329 1.21920 0.95046 0.95350 0.84042 0.90464 1.23219 0.97526 1.00501 0.96321 1.21153 0.93468 0.91270 0.87524 0.91211 1.42393 1.06214 1.23565 1.62867 1.19230 0.83823 1.05423 1.30042 0.90843 1.24775 0.97743 0.97505 1.00118 1.69652 1.32662 1.15188 1.39783 0.86217 0.84669 0.78169 0.77243 1.21533 1.21640 1.20561 1.23607 0.85330 0.96806 1.01518 1.48496 1.28499 1.47950 1.08650 1.16686 0.83348 0.80884 0.80473 1.90733 1.24807 1.43960 1.81697 1.24985 1.02801 1.07619 0.99090 1.20489 1.01171 0.98965 0.90699 1.20484 0.92757 0.95312 1.01633 1.25277 1.03762 1.08981 1.01251 1.17081 0.80136 0.78866 0.85743 1.43717 1.29885 1.52127 1.15403 1.90838 1.74240 1.60905 1.15339 1.84988 1.22184 1.39179 1.02645 0.89731 0.92026 0.92639 0.90275 0.89726 0.77708 0.93183 0.91606 0.90007 0.82511 0.82873 0.76728 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.71 37.16 0.32 -1.82 16 2 C 0.14 1.88 3.77 -66.41 -0.25 1.63 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -1.94 6.12 -24.44 -0.15 -2.09 16 5 C 0.18 3.01 3.60 -65.96 -0.24 2.77 16 6 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -15.39 5.18 -51.52 -0.27 -15.66 16 8 C -0.25 -6.17 9.98 -15.06 -0.15 -6.33 16 9 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 10 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 11 N -0.93 -25.54 13.06 55.49 0.72 -24.81 16 12 Si 0.91 20.27 29.55 -169.99 -5.02 15.24 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 C 0.06 0.85 4.92 -3.07 -0.02 0.84 16 17 N -0.60 -8.96 3.24 -164.40 -0.53 -9.49 16 18 C 0.60 9.31 7.61 -12.64 -0.10 9.22 16 19 O -0.53 -9.17 14.47 5.25 0.08 -9.10 16 20 C -0.22 -3.10 6.39 -36.54 -0.23 -3.33 16 21 C -0.08 -0.99 9.88 -40.69 -0.40 -1.39 16 22 C -0.07 -0.83 9.88 -40.69 -0.40 -1.23 16 23 C -0.27 -3.44 6.46 -36.54 -0.24 -3.68 16 24 C 0.60 7.80 8.08 -12.63 -0.10 7.70 16 25 N -0.85 -8.35 8.87 30.37 0.27 -8.08 16 26 O -0.54 -8.59 17.65 5.26 0.09 -8.50 16 27 S 0.24 3.01 17.65 -107.50 -1.90 1.11 16 28 H 0.08 1.23 5.88 -51.93 -0.31 0.92 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.19 7.92 -51.93 -0.41 0.78 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.39 9.12 7.72 -40.82 -0.32 8.80 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.07 0.96 6.98 -51.93 -0.36 0.60 16 36 H 0.08 1.38 6.69 -51.93 -0.35 1.03 16 37 H 0.16 1.75 8.04 -52.48 -0.42 1.33 16 38 H 0.15 1.65 8.04 -52.48 -0.42 1.23 16 39 H 0.40 3.55 7.93 -40.82 -0.32 3.23 16 40 H 0.41 3.27 8.93 -40.82 -0.36 2.90 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -30.33 346.87 -8.31 -38.64 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.93 Total: 13.33 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.05 Total: 2.09 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.19 Total: -58.04 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.17 Total: -17.60 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.90 Total: 1.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.33 -8.31 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989555607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds