Wall clock time and date at job start Tue Mar 31 2020 15:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47624 * 2 1 4 4 S 1.80999 * 109.46844 * 120.00414 * 2 1 3 5 5 C 1.76196 * 99.99964 * 294.99812 * 4 2 1 6 6 N 1.31549 * 126.45357 * 0.18324 * 5 4 2 7 7 N 1.28423 * 110.50053 * 180.28441 * 6 5 4 8 8 N 1.28901 * 110.34272 * 359.72575 * 7 6 5 9 9 N 1.35403 * 126.45547 * 180.02562 * 5 4 2 10 10 C 1.46502 * 127.38217 * 359.97438 * 9 5 4 11 11 C 1.52994 * 117.49807 * 239.71255 * 10 9 5 12 12 C 1.52994 * 60.03118 * 252.50089 * 11 10 9 13 13 C 1.50702 * 109.46802 * 239.99934 * 2 1 3 14 14 O 1.21292 * 120.00345 * 264.99660 * 13 2 1 15 15 N 1.34773 * 119.99765 * 85.00504 * 13 2 1 16 16 C 1.37099 * 119.99934 * 179.97438 * 15 13 2 17 17 H 1.08002 * 120.00442 * 222.61335 * 16 15 13 18 18 C 1.38952 * 119.99743 * 42.61514 * 16 15 13 19 19 N 1.31405 * 120.00115 * 19.23262 * 18 16 15 20 20 Si 1.86797 * 119.99877 * 199.22880 * 18 16 15 21 21 H 1.48504 * 109.47082 * 90.00180 * 20 18 16 22 22 H 1.48500 * 109.47262 * 209.99824 * 20 18 16 23 23 H 1.48500 * 109.47526 * 329.99999 * 20 18 16 24 24 C 1.46498 * 120.00334 * 359.97438 * 15 13 2 25 25 C 1.52994 * 117.50141 * 183.34291 * 24 15 13 26 26 C 1.52995 * 60.00208 * 252.50824 * 25 24 15 27 27 H 1.08999 * 109.47075 * 300.00284 * 1 2 3 28 28 H 1.09001 * 109.46660 * 59.99691 * 1 2 3 29 29 H 1.08994 * 109.46999 * 179.97438 * 1 2 3 30 30 H 1.08999 * 115.54776 * 25.37777 * 10 9 5 31 31 H 1.09006 * 117.49947 * 359.97438 * 11 10 9 32 32 H 1.08995 * 117.50066 * 144.99946 * 11 10 9 33 33 H 1.09003 * 117.50261 * 107.50076 * 12 11 10 34 34 H 1.09004 * 117.50078 * 252.52661 * 12 11 10 35 35 H 0.97001 * 120.00254 * 174.84153 * 19 18 16 36 36 H 1.09000 * 115.54957 * 329.04803 * 24 15 13 37 37 H 1.09007 * 117.50036 * 359.97438 * 25 24 15 38 38 H 1.08999 * 117.50227 * 145.01791 * 25 24 15 39 39 H 1.08999 * 117.50153 * 252.51220 * 26 25 24 40 40 H 1.09006 * 117.52146 * 107.47616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 16 2.1333 -0.8534 1.4778 5 6 1.5439 0.2421 2.7257 6 7 0.8591 1.3488 2.5343 7 7 0.5924 1.9125 3.6570 8 7 1.0723 1.2190 4.6318 9 7 1.7080 0.1018 4.0624 10 6 2.4037 -0.9796 4.7644 11 6 1.5938 -1.8100 5.7620 12 6 2.6368 -0.8115 6.2679 13 6 2.0323 -0.7104 -1.2305 14 8 2.3208 -1.8873 -1.1761 15 7 2.1611 -0.0381 -2.3914 16 6 2.6185 -0.6842 -3.5107 17 1 3.3367 -0.2018 -4.1572 18 6 2.1580 -1.9598 -3.8134 19 7 1.0408 -2.3991 -3.2790 20 14 3.1271 -3.0501 -4.9803 21 1 4.1053 -3.8564 -4.2068 22 1 2.1961 -3.9570 -5.6985 23 1 3.8503 -2.2037 -5.9630 24 6 1.8123 1.3833 -2.4573 25 6 1.9055 2.0711 -3.8207 26 6 2.9424 2.3758 -2.7378 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1740 -1.4940 4.1898 31 1 0.5434 -1.5515 5.8964 32 1 1.8313 -2.8706 5.8439 33 1 2.2726 0.1037 6.7347 34 1 3.5607 -1.2152 6.6821 35 1 0.6801 -3.2587 -3.5471 36 1 1.0164 1.7037 -1.7850 37 1 2.2267 1.4662 -4.6688 38 1 1.1707 2.8441 -4.0458 39 1 2.8898 3.3493 -2.2503 40 1 3.9455 1.9712 -2.8729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049425819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:23 Heat of formation + Delta-G solvation = 161.147550 kcal Electronic energy + Delta-G solvation = -25181.535433 eV Core-core repulsion = 21549.508249 eV Total energy + Delta-G solvation = -3632.027184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.116 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.78088 -38.86388 -37.92901 -36.22818 -33.24783 -33.11714 -32.72148 -31.76957 -30.69258 -25.55252 -25.33682 -23.61969 -23.37794 -22.81832 -21.76571 -21.68979 -21.19862 -19.65923 -18.33334 -17.02391 -16.50572 -16.39897 -16.08789 -15.48852 -15.22239 -14.69020 -14.29854 -13.88689 -13.80829 -13.54158 -13.29056 -13.03617 -12.63461 -12.32783 -12.13384 -12.02400 -11.94320 -11.69845 -11.53797 -11.17688 -11.10060 -10.98252 -10.93266 -10.84938 -10.67515 -10.64303 -10.25286 -10.14896 -10.03839 -10.02990 -9.82165 -8.84148 -8.23769 -7.76503 -7.18588 -6.21705 -3.97307 0.87787 0.91091 1.97988 2.13462 2.28446 3.19785 3.25578 3.32644 3.35755 3.88656 3.91647 4.18155 4.27055 4.38488 4.63219 4.67081 4.68500 5.07391 5.10589 5.16863 5.29682 5.36228 5.39079 5.45422 5.51541 5.54341 5.61249 5.63614 5.72106 5.90071 6.09402 6.15449 6.19279 6.24391 6.38016 6.60028 6.69833 6.87045 7.52099 8.12004 8.47238 8.89249 8.95524 9.50027 10.06618 10.86661 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.003880 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.430194 B = 7215.618980 C = 8230.369748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.112 0.888 4 S 0.099 5.901 5 C 0.215 3.785 6 N -0.335 5.335 7 N -0.036 5.036 8 N -0.097 5.097 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.165 4.165 12 C -0.157 4.157 13 C 0.498 3.502 14 O -0.520 6.520 15 N -0.411 5.411 16 C -0.352 4.352 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.826 5.826 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.065 3.935 25 C -0.170 4.170 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.266 0.734 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 3.140 12.741 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.233 4.233 3 H 0.130 0.870 4 S 0.325 5.675 5 C -0.168 4.168 6 N -0.192 5.192 7 N -0.032 5.032 8 N -0.084 5.084 9 N -0.140 5.140 10 C -0.042 4.042 11 C -0.204 4.204 12 C -0.195 4.195 13 C 0.282 3.718 14 O -0.398 6.398 15 N -0.131 5.131 16 C -0.478 4.478 17 H 0.101 0.899 18 C -0.137 4.137 19 N -0.458 5.458 20 Si 0.741 3.259 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.041 4.041 25 C -0.207 4.207 26 C -0.244 4.244 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.833 2.501 13.361 13.716 hybrid contribution 0.044 -0.036 -0.830 0.832 sum 1.877 2.465 12.531 12.908 Atomic orbital electron populations 1.21953 0.90708 1.03707 1.03272 1.23853 1.01754 1.03379 0.94311 0.87035 1.86356 1.65399 1.23246 0.92485 1.28413 0.99000 0.99587 0.89845 1.74979 1.18950 1.06491 1.18805 1.77811 1.12792 1.19374 0.93209 1.82343 1.13202 0.94062 1.18778 1.50878 1.40328 1.19077 1.03698 1.22183 1.00186 0.90355 0.91499 1.23516 0.98610 0.98339 0.99921 1.23406 1.01669 1.02333 0.92046 1.18745 0.83573 0.87335 0.82126 1.90577 1.51244 1.14792 1.83211 1.42577 1.57933 1.05231 1.07378 1.18922 1.25279 0.99652 1.03957 0.89937 1.25221 0.94382 0.98024 0.96059 1.69823 1.16806 1.19689 1.39529 0.86184 0.79860 0.80283 0.79565 1.20233 1.21226 1.19831 1.21832 0.98320 0.84046 0.99937 1.23076 1.01451 1.02216 0.94004 1.23326 0.96315 1.00070 1.04729 0.91035 0.90829 0.91145 0.82542 0.87654 0.86362 0.86853 0.86564 0.92372 0.87510 0.87368 0.89603 0.89569 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.82 37.16 0.33 -2.16 16 2 C -0.10 -1.90 1.87 -27.88 -0.05 -1.95 16 3 H 0.11 2.01 6.96 -51.92 -0.36 1.64 16 4 S 0.10 1.68 20.71 -107.50 -2.23 -0.55 16 5 C 0.21 3.45 7.84 -89.17 -0.70 2.76 16 6 N -0.34 -5.85 9.70 30.50 0.30 -5.55 16 7 N -0.04 -0.63 13.38 60.35 0.81 0.18 16 8 N -0.10 -1.51 13.45 60.35 0.81 -0.70 16 9 N -0.34 -4.83 4.01 -54.77 -0.22 -5.05 16 10 C 0.06 0.62 6.74 -67.90 -0.46 0.16 16 11 C -0.17 -1.28 10.45 -26.74 -0.28 -1.56 16 12 C -0.16 -1.15 10.23 -26.70 -0.27 -1.43 16 13 C 0.50 11.85 6.09 -10.99 -0.07 11.79 16 14 O -0.52 -14.28 13.77 5.55 0.08 -14.20 16 15 N -0.41 -9.76 2.85 -107.73 -0.31 -10.06 16 16 C -0.35 -9.11 7.99 -14.93 -0.12 -9.23 16 17 H 0.08 2.07 7.18 -52.49 -0.38 1.69 16 18 C 0.07 2.00 4.35 -17.47 -0.08 1.93 16 19 N -0.83 -23.25 11.66 55.50 0.65 -22.60 16 20 Si 0.91 21.04 29.60 -169.99 -5.03 16.01 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.06 1.25 5.46 -67.93 -0.37 0.87 16 25 C -0.17 -2.94 9.79 -26.74 -0.26 -3.21 16 26 C -0.21 -3.41 10.36 -26.73 -0.28 -3.69 16 27 H 0.07 1.22 5.90 -51.93 -0.31 0.91 16 28 H 0.07 1.32 6.96 -51.93 -0.36 0.96 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.16 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.27 7.21 8.32 -40.82 -0.34 6.87 16 36 H 0.11 1.89 5.82 -51.93 -0.30 1.59 16 37 H 0.11 2.06 6.69 -51.93 -0.35 1.71 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -31.87 351.24 -7.44 -39.31 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.98 Total: 3.65 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.61 Total: -5.71 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 2.04 Total: -43.79 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.23 Total: -0.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.87 -7.44 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.460 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds