Wall clock time and date at job start Tue Mar 31 2020 14:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30094 * 124.95340 * 2 1 4 4 C 1.35835 * 109.65432 * 180.27023 * 3 2 1 5 5 C 1.39786 * 133.50623 * 179.74888 * 4 3 2 6 6 C 1.37729 * 119.78478 * 180.02562 * 5 4 3 7 7 F 1.35099 * 119.77039 * 179.97438 * 6 5 4 8 8 C 1.39184 * 120.45420 * 359.96120 * 6 5 4 9 9 F 1.35090 * 119.80638 * 180.02562 * 8 6 5 10 10 C 1.37982 * 120.38506 * 359.97438 * 8 6 5 11 11 C 1.38832 * 119.84088 * 0.02590 * 10 8 6 12 12 N 1.36075 * 124.95527 * 179.78142 * 2 1 3 13 13 C 1.46500 * 126.35022 * 0.02562 * 12 2 1 14 14 C 1.50703 * 109.47014 * 269.68672 * 13 12 2 15 15 O 1.21290 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00516 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00694 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.46342 * 324.99575 * 17 16 14 19 19 C 1.52998 * 109.47185 * 84.99510 * 17 16 14 20 20 C 1.50701 * 109.47260 * 204.99997 * 17 16 14 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99694 * 180.27562 * 20 17 16 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 17 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 17 25 25 H 1.48504 * 109.47266 * 60.00049 * 24 22 20 26 26 H 1.48504 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47383 * 299.99456 * 24 22 20 28 28 H 1.09007 * 109.46966 * 270.21283 * 1 2 3 29 29 H 1.08993 * 109.46989 * 30.21726 * 1 2 3 30 30 H 1.09008 * 109.47009 * 150.21870 * 1 2 3 31 31 H 1.07999 * 120.10462 * 0.03078 * 5 4 3 32 32 H 1.07997 * 120.07899 * 180.02562 * 10 8 6 33 33 H 1.09003 * 109.47256 * 149.69126 * 13 12 2 34 34 H 1.08994 * 109.47582 * 29.68058 * 13 12 2 35 35 H 0.97006 * 119.99365 * 359.97438 * 16 14 13 36 36 H 1.08998 * 109.47156 * 60.00179 * 19 17 16 37 37 H 1.09004 * 109.46783 * 180.02562 * 19 17 16 38 38 H 1.09005 * 109.46870 * 300.00240 * 19 17 16 39 39 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0663 0.0000 4 6 3.5625 0.7079 -0.0060 5 6 4.7582 1.4319 -0.0131 6 6 5.9626 0.7637 -0.0187 7 9 7.1180 1.4638 -0.0261 8 6 5.9974 -0.6277 -0.0165 9 9 7.1861 -1.2696 -0.0215 10 6 4.8250 -1.3551 -0.0081 11 6 3.6031 -0.6961 -0.0025 12 7 2.2866 -1.1153 0.0043 13 6 1.8171 -2.5030 0.0090 14 6 1.6629 -2.9762 1.4315 15 8 1.9204 -2.2281 2.3508 16 7 1.2399 -4.2310 1.6822 17 6 1.0895 -4.6909 3.0650 18 1 1.8659 -4.2411 3.6839 19 6 -0.2861 -4.2786 3.5928 20 6 1.2164 -6.1918 3.1118 21 1 1.3912 -6.7476 2.2024 22 6 1.1032 -6.8559 4.3147 23 7 0.8900 -6.1792 5.4221 24 14 1.2527 -8.7171 4.3717 25 1 2.5875 -9.1223 3.8624 26 1 1.0955 -9.1836 5.7728 27 1 0.1946 -9.3249 3.5255 28 1 -0.3633 0.0038 1.0277 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8920 -0.5105 31 1 4.7377 2.5117 -0.0142 32 1 4.8578 -2.4346 -0.0060 33 1 2.5412 -3.1334 -0.5071 34 1 0.8551 -2.5629 -0.4999 35 1 1.0343 -4.8295 0.9469 36 1 -1.0625 -4.7283 2.9739 37 1 -0.3978 -4.6204 4.6218 38 1 -0.3778 -3.1930 3.5589 39 1 0.8100 -6.6465 6.2683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279799300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:53 Heat of formation + Delta-G solvation = -53.009908 kcal Electronic energy + Delta-G solvation = -26800.572191 eV Core-core repulsion = 22573.125305 eV Total energy + Delta-G solvation = -4227.446886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.48659 -48.56322 -42.43676 -39.14834 -37.11764 -35.13255 -34.22245 -32.59949 -31.39522 -30.70518 -29.44735 -27.56981 -27.21717 -25.39122 -22.99329 -22.57970 -21.77014 -20.29080 -19.72864 -18.42167 -18.06192 -17.59475 -17.10401 -16.46397 -16.23600 -15.88207 -15.49966 -15.22453 -15.08310 -14.98976 -14.82804 -14.28326 -14.14725 -13.72839 -13.68844 -13.26723 -13.07482 -12.99750 -12.68760 -12.56153 -12.38221 -11.83628 -11.77111 -11.23438 -11.11246 -11.06717 -10.90931 -10.77830 -10.47281 -10.36324 -10.19266 -9.42356 -9.22242 -8.69680 -8.38088 -8.25443 -8.18553 -6.24596 -4.35497 0.50644 0.97592 2.17529 2.50054 2.92890 3.17269 3.23498 3.23941 3.39558 3.57333 3.73012 3.91952 4.09178 4.24888 4.34812 4.48148 4.75696 4.80024 4.91420 4.95965 5.07598 5.12523 5.25328 5.31877 5.40560 5.55118 5.64082 5.69968 6.03774 6.20067 6.56475 6.64493 6.76365 6.83318 6.96675 7.19267 7.34196 7.52796 7.65593 7.73306 7.99336 8.36660 8.57849 8.81258 9.32356 10.81187 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.003256 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.349154 B = 8597.881612 C = 9860.736523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.313 3.687 3 N -0.493 5.493 4 C 0.070 3.930 5 C -0.075 4.075 6 C 0.061 3.939 7 F -0.128 7.128 8 C 0.081 3.919 9 F -0.125 7.125 10 C -0.108 4.108 11 C 0.073 3.927 12 N -0.464 5.464 13 C 0.082 3.918 14 C 0.481 3.519 15 O -0.534 6.534 16 N -0.701 5.701 17 C 0.266 3.734 18 H 0.049 0.951 19 C -0.147 4.147 20 C -0.539 4.539 21 H 0.062 0.938 22 C 0.068 3.932 23 N -0.882 5.882 24 Si 0.903 3.097 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.391 0.609 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.014 0.986 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 9.551 -14.742 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.213 5.213 4 C -0.049 4.049 5 C -0.095 4.095 6 C 0.039 3.961 7 F -0.107 7.107 8 C 0.059 3.941 9 F -0.104 7.104 10 C -0.130 4.130 11 C -0.037 4.037 12 N -0.152 5.152 13 C -0.044 4.044 14 C 0.262 3.738 15 O -0.411 6.411 16 N -0.349 5.349 17 C 0.165 3.835 18 H 0.067 0.933 19 C -0.205 4.205 20 C -0.578 4.578 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.519 5.519 24 Si 0.730 3.270 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.223 0.777 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.033 0.967 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.176 10.743 -13.823 17.547 hybrid contribution 0.680 -2.340 -0.127 2.440 sum 1.856 8.403 -13.951 16.391 Atomic orbital electron populations 1.20476 0.83890 1.04559 1.05049 1.23703 0.95910 0.80080 0.95493 1.70452 1.00033 1.26940 1.23855 1.18571 0.92062 0.89563 1.04707 1.19864 0.87376 1.00810 1.01455 1.17033 0.82437 0.87587 1.09081 1.91520 1.46351 1.78453 1.94385 1.16958 0.81379 0.88345 1.07381 1.91530 1.43226 1.81522 1.94117 1.19592 0.87800 1.00676 1.04896 1.18306 0.85147 0.94676 1.05565 1.44768 1.04178 1.06759 1.59518 1.21870 1.03716 0.80474 0.98351 1.20485 0.79477 0.83813 0.89984 1.90762 1.50354 1.54543 1.45459 1.46534 1.64843 1.11503 1.12049 1.18807 0.94769 0.94093 0.75868 0.93318 1.22082 0.97771 0.96496 1.04201 1.21132 1.51772 0.90637 0.94219 0.92025 1.24885 0.94434 0.98948 0.95315 1.69877 1.47545 1.35832 0.98610 0.86484 0.78726 0.84466 0.77299 1.20108 1.21031 1.20085 0.88572 0.88289 0.90024 0.83005 0.83699 0.86392 0.85930 0.77671 0.95313 0.88964 0.96713 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.18 36.01 0.37 -0.36 16 2 C 0.31 4.11 7.86 -154.80 -1.22 2.90 16 3 N -0.49 -7.35 11.27 -8.22 -0.09 -7.45 16 4 C 0.07 1.04 7.23 -84.68 -0.61 0.43 16 5 C -0.07 -0.97 10.07 -39.19 -0.39 -1.36 16 6 C 0.06 0.81 7.29 -39.42 -0.29 0.52 16 7 F -0.13 -1.71 17.16 2.25 0.04 -1.67 16 8 C 0.08 1.11 7.30 -39.32 -0.29 0.82 16 9 F -0.13 -1.75 17.16 2.25 0.04 -1.72 16 10 C -0.11 -1.45 10.01 -39.46 -0.40 -1.85 16 11 C 0.07 1.06 6.87 -83.96 -0.58 0.48 16 12 N -0.46 -6.20 2.30 -112.41 -0.26 -6.46 16 13 C 0.08 0.91 6.41 -5.19 -0.03 0.88 16 14 C 0.48 8.13 7.86 -10.99 -0.09 8.04 16 15 O -0.53 -11.77 16.09 5.55 0.09 -11.69 16 16 N -0.70 -12.50 5.07 -54.93 -0.28 -12.78 16 17 C 0.27 6.26 2.56 -69.08 -0.18 6.08 16 18 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 19 C -0.15 -3.39 9.26 37.16 0.34 -3.05 16 20 C -0.54 -13.40 8.73 -34.44 -0.30 -13.70 16 21 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 22 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.88 -23.95 11.31 55.43 0.63 -23.32 16 24 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.53 7.01 -51.92 -0.36 0.16 16 31 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.12 0.89 6.99 -51.93 -0.36 0.53 16 35 H 0.39 5.63 8.54 -40.82 -0.35 5.28 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -32.34 347.19 -7.66 -39.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.28 Total: 3.61 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.75 Total: 1.49 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.00 Total: -50.01 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.34 -7.66 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279799300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.016 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds