Wall clock time and date at job start Tue Mar 31 2020 15:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28780 * 125.86860 * 2 1 4 4 N 1.28697 * 111.75000 * 180.02562 * 3 2 1 5 5 C 1.34377 * 109.15685 * 0.02562 * 4 3 2 6 6 C 1.37209 * 125.86731 * 180.02562 * 2 1 3 7 7 N 1.32212 * 134.67611 * 359.97438 * 6 2 1 8 8 C 1.31597 * 121.87745 * 180.02562 * 7 6 2 9 9 C 1.38603 * 121.63972 * 359.97438 * 8 7 6 10 10 C 1.39492 * 119.36742 * 0.02562 * 9 8 7 11 11 C 1.47812 * 121.11254 * 179.97438 * 10 9 8 12 12 O 1.21561 * 119.99449 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00214 * 359.97438 * 11 10 9 14 14 C 1.38976 * 119.99693 * 175.80461 * 13 11 10 15 15 C 1.38689 * 120.29104 * 34.56217 * 14 13 11 16 16 C 1.38191 * 120.02982 * 179.97438 * 15 14 13 17 17 C 1.38885 * 120.62670 * 0.02562 * 16 15 14 18 18 C 1.36455 * 120.58416 * 0.02562 * 17 16 15 19 19 C 1.40750 * 119.94191 * 359.65217 * 18 17 16 20 20 C 1.41041 * 120.30343 * 180.32235 * 19 18 17 21 21 H 1.07995 * 120.00047 * 214.98320 * 20 19 18 22 22 C 1.39978 * 119.99700 * 34.97984 * 20 19 18 23 23 N 1.30844 * 120.00257 * 355.66239 * 22 20 19 24 24 Si 1.86804 * 119.99947 * 175.66896 * 22 20 19 25 25 H 1.48503 * 109.46956 * 59.99758 * 24 22 20 26 26 H 1.48496 * 109.47200 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46912 * 300.00108 * 24 22 20 28 28 H 1.09007 * 109.46817 * 269.97318 * 1 2 3 29 29 H 1.08998 * 109.47311 * 29.96876 * 1 2 3 30 30 H 1.08999 * 109.47241 * 149.97345 * 1 2 3 31 31 H 1.08002 * 119.18501 * 179.97438 * 8 7 6 32 32 H 1.08004 * 120.31366 * 179.75078 * 9 8 7 33 33 H 0.96995 * 120.00068 * 355.80062 * 13 11 10 34 34 H 1.08000 * 119.98344 * 0.02562 * 15 14 13 35 35 H 1.08005 * 119.68984 * 180.02562 * 16 15 14 36 36 H 1.07996 * 119.71267 * 179.97438 * 17 16 15 37 37 H 1.07991 * 120.02890 * 180.02562 * 18 17 16 38 38 H 0.96999 * 119.99904 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4676 0.7297 -0.0005 5 6 3.5856 -0.6089 -0.0015 6 6 2.2689 -1.1119 -0.0005 7 7 2.0517 -2.4161 -0.0007 8 6 3.0398 -3.2852 -0.0007 9 6 4.3651 -2.8793 -0.0011 10 6 4.6632 -1.5167 -0.0009 11 6 6.0627 -1.0410 -0.0007 12 8 6.2993 0.1514 -0.0010 13 7 7.0763 -1.9292 -0.0002 14 6 8.3900 -1.4843 -0.0881 15 6 8.7656 -0.2901 0.5088 16 6 10.0735 0.1469 0.4185 17 6 11.0230 -0.5993 -0.2674 18 6 10.6810 -1.7774 -0.8650 19 6 9.3574 -2.2488 -0.7824 20 6 8.9971 -3.4688 -1.3915 21 1 8.0176 -3.5842 -1.8313 22 6 9.9093 -4.5300 -1.4259 23 7 11.1242 -4.3635 -0.9696 24 14 9.3921 -6.1839 -2.1234 25 1 8.9822 -6.0170 -3.5410 26 1 10.5324 -7.1320 -2.0467 27 1 8.2505 -6.7174 -1.3377 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 2.8125 -4.3410 -0.0004 32 1 5.1593 -3.6112 0.0030 33 1 6.8890 -2.8789 0.0616 34 1 8.0357 0.2982 1.0451 35 1 10.3600 1.0775 0.8857 36 1 12.0409 -0.2436 -0.3291 37 1 11.4267 -2.3506 -1.3957 38 1 11.7561 -5.0990 -0.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344394739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:37 Heat of formation + Delta-G solvation = 130.748191 kcal Electronic energy + Delta-G solvation = -25948.866366 eV Core-core repulsion = 22180.077015 eV Total energy + Delta-G solvation = -3768.789350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.43951 -39.96394 -38.78935 -37.17594 -35.12641 -33.98046 -33.66720 -32.39397 -30.90500 -29.62846 -28.51817 -28.11748 -25.75251 -25.11832 -23.78605 -22.84553 -21.35985 -20.58958 -19.73508 -18.74322 -17.98079 -17.44278 -17.17632 -17.10363 -16.22100 -15.31004 -15.17957 -14.82842 -14.63192 -14.30554 -13.97745 -13.83357 -13.43793 -13.16680 -13.09872 -12.84731 -12.63048 -12.36222 -12.31461 -11.80553 -11.59073 -11.28353 -11.22037 -11.19516 -10.95304 -10.52458 -10.24510 -9.91446 -9.80403 -9.37012 -9.34659 -9.24251 -9.03676 -8.90027 -7.33858 -7.00530 -6.66739 -4.49481 -0.00682 0.76663 1.75362 2.13884 2.61605 2.85622 3.01070 3.01667 3.15061 3.16287 3.39382 3.61202 3.82865 3.86449 4.11782 4.25283 4.44502 4.57307 4.63746 4.69372 4.85402 4.98079 5.19580 5.44361 5.46532 5.57909 5.72078 6.01846 6.22001 6.31532 6.49044 6.55633 6.89455 7.01770 7.15365 7.23431 7.33830 7.62010 7.68163 7.93254 8.06392 8.07017 8.14659 8.33294 8.51657 8.74568 8.79373 8.94689 10.18269 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003788 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.092921 B = 7389.380556 C = 9063.204682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.314 5.314 3 N -0.012 5.012 4 N -0.210 5.210 5 C 0.002 3.998 6 C 0.208 3.792 7 N -0.464 5.464 8 C 0.161 3.839 9 C -0.148 4.148 10 C 0.004 3.996 11 C 0.530 3.470 12 O -0.500 6.500 13 N -0.623 5.623 14 C 0.019 3.981 15 C -0.090 4.090 16 C -0.214 4.214 17 C -0.117 4.117 18 C -0.139 4.139 19 C 0.099 3.901 20 C -0.471 4.471 21 H 0.075 0.925 22 C 0.074 3.926 23 N -0.806 5.806 24 Si 0.913 3.087 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.265 1.265 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.403 0.597 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.835 -2.413 1.820 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.116 5.116 3 N 0.007 4.993 4 N -0.084 5.084 5 C -0.127 4.127 6 C -0.034 4.034 7 N -0.178 5.178 8 C -0.012 4.012 9 C -0.172 4.172 10 C -0.013 4.013 11 C 0.315 3.685 12 O -0.375 6.375 13 N -0.266 5.266 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.234 4.234 17 C -0.136 4.136 18 C -0.159 4.159 19 C 0.096 3.904 20 C -0.502 4.502 21 H 0.093 0.907 22 C -0.142 4.142 23 N -0.432 5.432 24 Si 0.738 3.262 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.190 1.190 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.198 0.802 32 H 0.178 0.822 33 H 0.239 0.761 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.415 -0.320 1.839 17.514 hybrid contribution 0.341 -2.146 -0.260 2.188 sum -17.074 -2.466 1.578 17.323 Atomic orbital electron populations 1.22238 0.71614 1.05949 1.04966 1.46985 1.08989 1.02063 1.53549 1.78266 0.97206 1.11054 1.12823 1.75563 1.06239 1.10879 1.15700 1.20113 0.93182 0.92321 1.07093 1.19785 0.88493 0.89469 1.05627 1.66266 1.37773 0.98999 1.14785 1.22802 0.86916 0.98853 0.92585 1.22499 0.99295 0.94883 1.00477 1.19870 0.93133 0.91775 0.96516 1.17898 0.83765 0.86813 0.79981 1.90830 1.83783 1.15215 1.47676 1.42700 1.04721 1.09616 1.69593 1.17783 0.83194 0.99913 1.06582 1.20690 0.95590 0.95781 0.98964 1.20389 0.93548 1.01090 1.08391 1.20571 0.97306 0.96156 0.99577 1.21189 0.97347 0.94892 1.02501 1.17447 0.91208 0.92110 0.89648 1.19268 1.00622 0.96303 1.34035 0.90714 1.25861 0.94212 1.00940 0.93198 1.69748 1.04347 1.33306 1.35808 0.86293 0.79054 0.80720 0.80177 1.19056 1.20371 1.18984 0.89245 0.87905 0.88063 0.80167 0.82163 0.76079 0.87080 0.89010 0.89211 0.85098 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.41 59.85 0.68 1.29 16 2 N -0.31 -3.95 3.79 -67.23 -0.26 -4.21 16 3 N -0.01 -0.18 13.07 60.35 0.79 0.60 16 4 N -0.21 -3.92 11.92 32.24 0.38 -3.54 16 5 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 6 C 0.21 2.95 8.08 -156.21 -1.26 1.69 16 7 N -0.46 -5.57 10.35 -12.39 -0.13 -5.70 16 8 C 0.16 1.57 11.14 -17.52 -0.20 1.37 16 9 C -0.15 -1.71 9.61 -38.98 -0.37 -2.09 16 10 C 0.00 0.06 5.92 -104.51 -0.62 -0.56 16 11 C 0.53 10.60 7.63 -12.35 -0.09 10.50 16 12 O -0.50 -11.84 13.68 5.31 0.07 -11.77 16 13 N -0.62 -12.43 4.91 -10.34 -0.05 -12.48 16 14 C 0.02 0.45 6.33 -83.21 -0.53 -0.08 16 15 C -0.09 -2.17 8.68 -39.43 -0.34 -2.51 16 16 C -0.21 -4.97 10.04 -39.36 -0.39 -5.37 16 17 C -0.12 -2.75 9.97 -39.99 -0.40 -3.15 16 18 C -0.14 -3.52 8.62 -39.28 -0.34 -3.86 16 19 C 0.10 2.50 5.56 -106.64 -0.59 1.91 16 20 C -0.47 -11.33 8.22 -37.87 -0.31 -11.64 16 21 H 0.07 1.68 7.63 -52.49 -0.40 1.28 16 22 C 0.07 1.72 5.42 -17.32 -0.09 1.62 16 23 N -0.81 -19.58 10.62 55.55 0.59 -18.99 16 24 Si 0.91 17.18 29.56 -169.99 -5.03 12.15 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.16 1.46 6.54 -52.48 -0.34 1.12 16 33 H 0.40 6.84 6.25 -40.82 -0.26 6.58 16 34 H 0.11 2.67 6.19 -52.49 -0.33 2.35 16 35 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.13 3.40 6.15 -52.49 -0.32 3.07 16 38 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -32.81 332.49 -7.38 -40.19 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.32 Total: 10.15 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -5.45 Total: -11.41 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.33 Total: -44.32 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.81 -7.38 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344394739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.939 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds