Wall clock time and date at job start Tue Mar 31 2020 15:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28780 * 125.86860 * 2 1 4 4 N 1.28697 * 111.75000 * 180.02562 * 3 2 1 5 5 C 1.34377 * 109.15685 * 0.02562 * 4 3 2 6 6 C 1.37209 * 125.86731 * 180.02562 * 2 1 3 7 7 N 1.32212 * 134.67611 * 359.97438 * 6 2 1 8 8 C 1.31597 * 121.87745 * 180.02562 * 7 6 2 9 9 C 1.38603 * 121.63972 * 359.97438 * 8 7 6 10 10 C 1.39492 * 119.36742 * 0.02562 * 9 8 7 11 11 C 1.47812 * 121.11254 * 179.97438 * 10 9 8 12 12 O 1.21561 * 119.99449 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00214 * 359.97438 * 11 10 9 14 14 C 1.38976 * 119.99693 * 175.80461 * 13 11 10 15 15 C 1.38689 * 120.29104 * 34.56217 * 14 13 11 16 16 C 1.38191 * 120.02982 * 179.97438 * 15 14 13 17 17 C 1.38885 * 120.62670 * 0.02562 * 16 15 14 18 18 C 1.36455 * 120.58416 * 0.02562 * 17 16 15 19 19 C 1.40750 * 119.94191 * 359.65217 * 18 17 16 20 20 C 1.41041 * 120.30343 * 180.32235 * 19 18 17 21 21 H 1.07995 * 120.00047 * 214.98320 * 20 19 18 22 22 C 1.39978 * 119.99700 * 34.97984 * 20 19 18 23 23 N 1.30844 * 120.00257 * 355.66239 * 22 20 19 24 24 Si 1.86804 * 119.99947 * 175.66896 * 22 20 19 25 25 H 1.48503 * 109.46956 * 59.99758 * 24 22 20 26 26 H 1.48496 * 109.47200 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46912 * 300.00108 * 24 22 20 28 28 H 1.09007 * 109.46817 * 269.97318 * 1 2 3 29 29 H 1.08998 * 109.47311 * 29.96876 * 1 2 3 30 30 H 1.08999 * 109.47241 * 149.97345 * 1 2 3 31 31 H 1.08002 * 119.18501 * 179.97438 * 8 7 6 32 32 H 1.08004 * 120.31366 * 179.75078 * 9 8 7 33 33 H 0.96995 * 120.00068 * 355.80062 * 13 11 10 34 34 H 1.08000 * 119.98344 * 0.02562 * 15 14 13 35 35 H 1.08005 * 119.68984 * 180.02562 * 16 15 14 36 36 H 1.07996 * 119.71267 * 179.97438 * 17 16 15 37 37 H 1.07991 * 120.02890 * 180.02562 * 18 17 16 38 38 H 0.96999 * 119.99904 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2195 1.0436 0.0000 4 7 3.4676 0.7297 -0.0005 5 6 3.5856 -0.6089 -0.0015 6 6 2.2689 -1.1119 -0.0005 7 7 2.0517 -2.4161 -0.0007 8 6 3.0398 -3.2852 -0.0007 9 6 4.3651 -2.8793 -0.0011 10 6 4.6632 -1.5167 -0.0009 11 6 6.0627 -1.0410 -0.0007 12 8 6.2993 0.1514 -0.0010 13 7 7.0763 -1.9292 -0.0002 14 6 8.3900 -1.4843 -0.0881 15 6 8.7656 -0.2901 0.5088 16 6 10.0735 0.1469 0.4185 17 6 11.0230 -0.5993 -0.2674 18 6 10.6810 -1.7774 -0.8650 19 6 9.3574 -2.2488 -0.7824 20 6 8.9971 -3.4688 -1.3915 21 1 8.0176 -3.5842 -1.8313 22 6 9.9093 -4.5300 -1.4259 23 7 11.1242 -4.3635 -0.9696 24 14 9.3921 -6.1839 -2.1234 25 1 8.9822 -6.0170 -3.5410 26 1 10.5324 -7.1320 -2.0467 27 1 8.2505 -6.7174 -1.3377 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 2.8125 -4.3410 -0.0004 32 1 5.1593 -3.6112 0.0030 33 1 6.8890 -2.8789 0.0616 34 1 8.0357 0.2982 1.0451 35 1 10.3600 1.0775 0.8857 36 1 12.0409 -0.2436 -0.3291 37 1 11.4267 -2.3506 -1.3957 38 1 11.7561 -5.0990 -0.9931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344394739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:36 Heat of formation + Delta-G solvation = 108.881480 kcal Electronic energy + Delta-G solvation = -25949.814577 eV Core-core repulsion = 22180.077015 eV Total energy + Delta-G solvation = -3769.737562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.112 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.49339 -41.43689 -39.97516 -38.88554 -36.12353 -35.64016 -35.45196 -33.51874 -31.92682 -31.46357 -30.22300 -28.90830 -27.26220 -26.55757 -24.82538 -24.18490 -23.06242 -22.15579 -21.11552 -19.91382 -19.35899 -18.91380 -18.49250 -18.10700 -17.78348 -16.91487 -16.43554 -16.14166 -15.99956 -15.70670 -15.38053 -14.93009 -14.59796 -14.42293 -14.18445 -14.10516 -14.06189 -13.73624 -13.55583 -13.41920 -12.99290 -12.79489 -12.70368 -12.60152 -12.14860 -12.09512 -12.00910 -11.60670 -11.21563 -11.01118 -10.87555 -10.50295 -10.34116 -10.10689 -9.23055 -8.80402 -8.42138 -6.33923 -1.09344 -0.20341 0.81986 0.90332 1.03422 1.12169 1.49453 1.59758 1.61076 1.81455 2.08396 2.29394 2.55494 2.60801 2.84998 3.14265 3.22765 3.45022 3.63450 3.70495 4.01422 4.23706 4.26284 4.36792 4.50703 4.56112 4.59419 4.63108 4.73059 4.80819 5.08826 5.12606 5.20787 5.35381 5.38290 5.42911 5.79728 5.85976 6.14363 6.18797 6.26991 6.39148 6.63072 6.71619 6.97415 7.01038 7.05165 7.28758 8.45927 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003788 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.092921 B = 7389.380556 C = 9063.204682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.297 5.297 3 N -0.023 5.023 4 N -0.271 5.271 5 C -0.026 4.026 6 C 0.199 3.801 7 N -0.453 5.453 8 C 0.178 3.822 9 C -0.115 4.115 10 C -0.036 4.036 11 C 0.532 3.468 12 O -0.548 6.548 13 N -0.618 5.618 14 C 0.015 3.985 15 C -0.106 4.106 16 C -0.222 4.222 17 C -0.121 4.121 18 C -0.164 4.164 19 C 0.074 3.926 20 C -0.489 4.489 21 H 0.086 0.914 22 C 0.033 3.967 23 N -0.837 5.837 24 Si 0.987 3.013 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.242 1.242 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.241 0.759 32 H 0.190 0.810 33 H 0.416 0.584 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.584 -5.753 1.614 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.100 5.100 3 N -0.005 5.005 4 N -0.144 5.144 5 C -0.156 4.156 6 C -0.042 4.042 7 N -0.167 5.167 8 C 0.004 3.996 9 C -0.138 4.138 10 C -0.052 4.052 11 C 0.320 3.680 12 O -0.426 6.426 13 N -0.262 5.262 14 C -0.080 4.080 15 C -0.127 4.127 16 C -0.242 4.242 17 C -0.140 4.140 18 C -0.184 4.184 19 C 0.071 3.929 20 C -0.519 4.519 21 H 0.104 0.896 22 C -0.181 4.181 23 N -0.464 5.464 24 Si 0.807 3.193 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.165 1.165 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.257 0.743 32 H 0.207 0.793 33 H 0.255 0.745 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.211 -3.633 1.646 20.601 hybrid contribution 1.081 -1.162 -0.179 1.598 sum -19.130 -4.795 1.468 19.776 Atomic orbital electron populations 1.22801 0.68239 1.07923 1.07012 1.47482 1.10619 1.01074 1.50783 1.78134 0.96894 1.12113 1.13344 1.75477 1.07774 1.12589 1.18554 1.20426 0.94943 0.92117 1.08152 1.19931 0.87556 0.90449 1.06297 1.66486 1.38252 0.97824 1.14131 1.23811 0.85371 1.00835 0.89553 1.22969 1.01339 0.93045 0.96464 1.19628 0.90442 0.93814 1.01302 1.18477 0.85248 0.86125 0.78152 1.90789 1.84837 1.17292 1.49641 1.42586 1.03496 1.10404 1.69718 1.17888 0.84710 0.99591 1.05802 1.20825 0.95941 0.96285 0.99602 1.20655 0.93284 1.01884 1.08366 1.20785 0.98488 0.95639 0.99039 1.21230 0.97636 0.95779 1.03797 1.17785 0.91540 0.93115 0.90506 1.19535 1.01557 0.96353 1.34469 0.89551 1.26801 0.93811 1.04577 0.92873 1.69847 1.05527 1.34677 1.36358 0.85166 0.79183 0.75540 0.79368 1.19021 1.20491 1.16542 0.87070 0.85983 0.86125 0.74342 0.79333 0.74451 0.87822 0.86949 0.86959 0.86383 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 11.41 127.77 1.46 2.27 16 2 N -0.30 -7.11 3.79 -366.61 -1.39 -8.51 16 3 N -0.02 -0.74 13.07 37.02 0.48 -0.26 16 4 N -0.27 -10.64 11.92 -51.93 -0.62 -11.26 16 5 C -0.03 -0.89 6.97 40.07 0.28 -0.61 16 6 C 0.20 5.33 8.08 134.17 1.08 6.42 16 7 N -0.45 -9.14 10.35 -193.10 -2.00 -11.14 16 8 C 0.18 2.55 11.14 84.82 0.94 3.50 16 9 C -0.11 -2.27 9.61 22.66 0.22 -2.06 16 10 C -0.04 -1.15 5.92 -19.79 -0.12 -1.27 16 11 C 0.53 21.91 7.63 86.78 0.66 22.58 16 12 O -0.55 -27.48 13.68 -3.91 -0.05 -27.54 16 13 N -0.62 -24.89 4.91 -304.92 -1.50 -26.39 16 14 C 0.01 0.71 6.33 38.92 0.25 0.96 16 15 C -0.11 -5.31 8.68 22.37 0.19 -5.12 16 16 C -0.22 -10.57 10.04 22.41 0.22 -10.35 16 17 C -0.12 -5.79 9.97 22.01 0.22 -5.57 16 18 C -0.16 -8.56 8.62 22.47 0.19 -8.37 16 19 C 0.07 3.82 5.56 -21.17 -0.12 3.70 16 20 C -0.49 -23.42 8.22 23.38 0.19 -23.23 16 21 H 0.09 3.80 7.63 -2.91 -0.02 3.77 16 22 C 0.03 1.49 5.42 85.26 0.46 1.96 16 23 N -0.84 -40.97 10.62 21.83 0.23 -40.74 16 24 Si 0.99 33.62 29.56 68.60 2.03 35.65 16 25 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.28 -9.51 7.11 99.48 0.71 -8.80 16 27 H -0.24 -7.33 7.11 99.48 0.71 -6.62 16 28 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.24 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.19 2.58 6.54 -2.91 -0.02 2.56 16 33 H 0.42 13.73 6.25 -92.71 -0.58 13.15 16 34 H 0.10 5.28 6.19 -2.91 -0.02 5.26 16 35 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 37 H 0.12 6.36 6.15 -2.92 -0.02 6.35 16 38 H 0.28 12.78 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -77.50 332.49 3.89 -73.60 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.57 Total: 31.77 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 6.14 Total: -15.19 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.79 Total: -98.29 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Total: -77.50 3.89 -73.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344394739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.483 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds