Wall clock time and date at job start Tue Mar 31 2020 15:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47399 * 2 1 4 4 C 1.50699 * 109.46791 * 240.00017 * 2 1 3 5 5 C 1.38268 * 119.94413 * 299.72371 * 4 2 1 6 6 C 1.38142 * 120.05495 * 179.72547 * 5 4 2 7 7 C 1.38732 * 119.94430 * 0.53657 * 6 5 4 8 8 O 1.35901 * 120.05843 * 179.72483 * 7 6 5 9 9 C 1.42899 * 116.99762 * 0.02562 * 8 7 6 10 10 F 1.39899 * 109.46835 * 299.99838 * 9 8 7 11 11 F 1.39900 * 109.47717 * 60.00042 * 9 8 7 12 12 C 1.38733 * 119.88754 * 359.73728 * 7 6 5 13 13 C 1.38141 * 119.94604 * 0.02562 * 12 7 6 14 14 N 1.46498 * 109.47126 * 119.99897 * 2 1 3 15 15 C 1.35315 * 125.86442 * 35.00160 * 14 2 1 16 16 C 1.35357 * 106.17188 * 180.02562 * 15 14 2 17 17 C 1.50697 * 126.74925 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47285 * 124.99625 * 17 16 15 19 19 H 1.07998 * 119.99908 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99635 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00780 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99604 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47329 * 90.00158 * 22 20 18 24 24 H 1.48504 * 109.47247 * 209.99670 * 22 20 18 25 25 H 1.48505 * 109.47271 * 329.99907 * 22 20 18 26 26 N 1.33771 * 106.49776 * 359.97438 * 16 15 14 27 27 N 1.28636 * 108.88559 * 0.02562 * 26 16 15 28 28 H 1.08993 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47302 * 300.00328 * 1 2 3 30 30 H 1.09004 * 109.46738 * 59.99559 * 1 2 3 31 31 H 1.08003 * 119.97056 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.03174 * 180.24937 * 6 5 4 33 33 H 1.09002 * 109.47316 * 180.02562 * 9 8 7 34 34 H 1.08004 * 120.02821 * 179.97438 * 12 7 6 35 35 H 1.08002 * 119.97276 * 179.97438 * 13 12 7 36 36 H 1.07996 * 126.91369 * 359.74840 * 15 14 2 37 37 H 1.09005 * 109.46960 * 244.99633 * 17 16 15 38 38 H 1.09002 * 109.47190 * 4.98987 * 17 16 15 39 39 H 0.96999 * 120.00654 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.7022 -2.0358 -1.4452 6 6 2.1566 -2.6877 -2.5753 7 6 2.9540 -2.0145 -3.4894 8 8 3.4070 -2.6551 -4.5991 9 6 3.0228 -4.0219 -4.7613 10 9 3.4930 -4.7703 -3.6769 11 9 1.6278 -4.1106 -4.8192 12 6 3.2885 -0.6863 -3.2688 13 6 2.8275 -0.0375 -2.1397 14 7 2.0183 -0.6906 1.1962 15 6 1.4357 -1.7587 1.7883 16 6 2.2124 -2.0703 2.8521 17 6 1.9878 -3.1900 3.8354 18 6 3.2174 -4.0592 3.8963 19 1 4.0754 -3.8246 3.2839 20 6 3.2467 -5.1540 4.7339 21 7 2.2021 -5.4395 5.4800 22 14 4.7711 -6.2311 4.8099 23 1 5.6891 -5.7166 5.8577 24 1 4.3767 -7.6246 5.1383 25 1 5.4594 -6.2084 3.4942 26 7 3.2192 -1.1895 2.8583 27 7 3.0751 -0.3855 1.8646 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.0852 -2.5608 -0.7309 32 1 1.8953 -3.7217 -2.7446 33 1 3.4507 -4.4125 -5.6846 34 1 3.9095 -0.1602 -3.9787 35 1 3.0879 0.9964 -1.9673 36 1 0.5304 -2.2589 1.4775 37 1 1.7889 -2.7723 4.8224 38 1 1.1350 -3.7887 3.5157 39 1 2.2226 -6.2099 6.0690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:36 Heat of formation + Delta-G solvation = -23.798978 kcal Electronic energy + Delta-G solvation = -26729.818638 eV Core-core repulsion = 22503.638433 eV Total energy + Delta-G solvation = -4226.180205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.69222 -47.67971 -42.55600 -40.35320 -38.28912 -35.39348 -33.37190 -31.44962 -31.31700 -30.73392 -29.23552 -27.53793 -26.46311 -24.51747 -23.40706 -23.14821 -22.28144 -20.53986 -20.04798 -19.36990 -18.55416 -18.25381 -17.12447 -16.61597 -16.18420 -16.03534 -15.26414 -14.98372 -14.92942 -14.52666 -14.44721 -14.28661 -13.99841 -13.94280 -13.75351 -13.64024 -13.11618 -13.03320 -12.85018 -12.53569 -12.21659 -12.14389 -11.83448 -11.76283 -11.42611 -11.17325 -10.94287 -10.70157 -10.61618 -10.05176 -9.66579 -9.42981 -9.30165 -9.24167 -8.67865 -8.40542 -8.08459 -5.96143 -3.96307 0.88685 1.05473 2.16349 2.27357 2.79118 3.11520 3.39184 3.43913 3.44940 3.47839 3.56444 3.90715 4.23533 4.26437 4.39984 4.52789 4.54338 4.59478 4.79079 4.97573 5.02058 5.15354 5.23563 5.37785 5.42485 5.44186 5.68700 5.73059 5.80981 5.86029 5.98633 6.13369 6.19424 6.23206 6.39725 6.72927 7.17052 7.23768 7.55944 7.65635 8.01951 8.40846 9.07274 9.36360 9.66458 11.15009 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.003801 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.656862 B = 7364.303643 C = 9128.496579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.193 3.807 3 H 0.115 0.885 4 C -0.130 4.130 5 C -0.055 4.055 6 C -0.187 4.187 7 C 0.111 3.889 8 O -0.322 6.322 9 C 0.411 3.589 10 F -0.194 7.194 11 F -0.199 7.199 12 C -0.136 4.136 13 C -0.063 4.063 14 N -0.297 5.297 15 C -0.083 4.083 16 C 0.036 3.964 17 C 0.092 3.908 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.899 5.899 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.275 1.275 26 N -0.262 5.262 27 N -0.107 5.107 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.182 0.818 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.177 0.823 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 8.535 -24.354 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 H 0.133 0.867 4 C -0.132 4.132 5 C -0.074 4.074 6 C -0.205 4.205 7 C 0.068 3.932 8 O -0.239 6.239 9 C 0.321 3.679 10 F -0.176 7.176 11 F -0.180 7.180 12 C -0.155 4.155 13 C -0.081 4.081 14 N -0.093 5.093 15 C -0.231 4.231 16 C -0.101 4.101 17 C 0.054 3.946 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.539 5.539 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.200 1.200 26 N -0.129 5.129 27 N -0.085 5.085 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.198 0.802 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.194 0.806 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.307 9.428 -24.229 26.208 hybrid contribution -0.304 -1.708 -0.004 1.735 sum -3.611 7.720 -24.233 25.688 Atomic orbital electron populations 1.22192 0.91574 1.04148 1.03885 1.20220 0.95486 0.96208 0.79043 0.86709 1.19860 1.01508 0.95176 0.96621 1.20883 0.97304 0.93488 0.95697 1.21527 1.01613 1.01249 0.96140 1.18919 0.95477 0.92678 0.86147 1.86606 1.70975 1.24414 1.41933 1.23367 0.75996 0.78390 0.90169 1.93145 1.88029 1.76816 1.59618 1.93102 1.32546 1.95617 1.96775 1.20375 1.03778 0.91682 0.99642 1.20849 0.94699 1.00083 0.92493 1.47308 1.18617 1.22435 1.20899 1.23200 1.04550 0.95588 0.99748 1.22999 0.90946 0.98432 0.97746 1.17719 0.97980 0.87664 0.91273 1.21044 0.99939 1.09382 1.23659 0.92333 1.24954 0.96305 0.97607 0.95470 1.69942 1.29267 1.28253 1.26402 0.86534 0.83248 0.79434 0.78475 1.20536 1.21297 1.19961 1.75068 1.21505 1.03954 1.12339 1.78193 1.04293 1.22483 1.03521 0.90945 0.90752 0.89721 0.85005 0.84578 0.80165 0.84507 0.84475 0.80558 0.94346 0.94641 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.65 37.16 0.32 -1.06 16 2 C 0.19 2.22 3.47 -69.08 -0.24 1.98 16 3 H 0.11 1.14 7.87 -51.93 -0.41 0.73 16 4 C -0.13 -1.52 4.98 -104.60 -0.52 -2.04 16 5 C -0.06 -0.70 8.82 -39.61 -0.35 -1.05 16 6 C -0.19 -2.33 8.26 -39.43 -0.33 -2.66 16 7 C 0.11 1.29 6.48 -39.22 -0.25 1.03 16 8 O -0.32 -3.18 10.43 -19.43 -0.20 -3.38 16 9 C 0.41 3.15 5.98 101.05 0.60 3.75 16 10 F -0.19 -2.08 15.58 2.25 0.04 -2.05 16 11 F -0.20 -1.80 15.58 2.25 0.04 -1.76 16 12 C -0.14 -1.40 9.99 -39.43 -0.39 -1.79 16 13 C -0.06 -0.63 9.66 -39.61 -0.38 -1.02 16 14 N -0.30 -4.99 3.18 -55.89 -0.18 -5.17 16 15 C -0.08 -1.52 9.48 -17.04 -0.16 -1.68 16 16 C 0.04 0.84 6.44 -82.78 -0.53 0.30 16 17 C 0.09 2.45 5.55 -29.04 -0.16 2.29 16 18 C -0.50 -14.73 9.09 -34.44 -0.31 -15.04 16 19 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 N -0.26 -6.38 12.40 33.29 0.41 -5.96 16 27 N -0.11 -2.23 13.17 60.35 0.79 -1.44 16 28 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.13 1.63 6.53 -52.48 -0.34 1.29 16 32 H 0.14 1.67 5.10 -52.49 -0.27 1.40 16 33 H 0.18 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.14 1.03 7.94 -52.49 -0.42 0.61 16 36 H 0.18 2.61 7.09 -52.49 -0.37 2.24 16 37 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -35.98 342.55 -5.25 -41.23 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.22 Total: -2.52 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.81 Total: -15.41 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 1.77 Total: -38.76 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -0.20 Total: -3.38 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.98 -5.25 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds