Wall clock time and date at job start Tue Mar 31 2020 14:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47251 * 2 1 4 4 C 1.38386 * 119.84900 * 97.41705 * 3 2 1 5 5 C 1.37921 * 120.14881 * 179.70410 * 4 3 2 6 6 C 1.39643 * 119.85075 * 0.27419 * 5 4 3 7 7 C 1.47731 * 120.15284 * 179.97438 * 6 5 4 8 8 O 1.21470 * 120.00032 * 180.02562 * 7 6 5 9 9 O 1.34706 * 119.99829 * 359.97438 * 7 6 5 10 10 C 1.45201 * 117.00001 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47265 * 65.00482 * 11 10 9 13 13 C 1.42901 * 114.00015 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46862 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99875 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99903 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99931 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46972 * 90.00123 * 18 16 14 20 20 H 1.48500 * 109.47017 * 209.99734 * 18 16 14 21 21 H 1.48495 * 109.47161 * 330.00102 * 18 16 14 22 22 C 1.39616 * 119.69906 * 0.02562 * 6 5 4 23 23 C 1.37957 * 119.84546 * 359.97438 * 22 6 5 24 24 N 1.48025 * 119.92499 * 180.02562 * 23 22 6 25 25 O 1.21796 * 119.99731 * 6.08844 * 24 23 22 26 26 O 1.21801 * 119.99870 * 186.09698 * 24 23 22 27 27 H 1.09005 * 109.46871 * 60.00555 * 1 2 3 28 28 H 1.09006 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47344 * 299.99985 * 1 2 3 30 30 H 1.09004 * 109.47327 * 239.99615 * 2 1 3 31 31 H 1.09007 * 109.47049 * 120.00205 * 2 1 3 32 32 H 1.08004 * 119.92346 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.07460 * 180.30107 * 5 4 3 34 34 H 1.08999 * 109.47313 * 300.00225 * 10 9 7 35 35 H 1.09000 * 109.47013 * 60.00495 * 10 9 7 36 36 H 1.08996 * 109.47247 * 185.00201 * 11 10 9 37 37 H 1.09000 * 109.47350 * 305.00131 * 11 10 9 38 38 H 1.08994 * 109.47241 * 299.99786 * 13 12 11 39 39 H 1.09001 * 109.47272 * 59.99677 * 13 12 11 40 40 H 0.97000 * 119.99904 * 179.97438 * 17 16 14 41 41 H 1.07995 * 120.07669 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4080 2.0185 1.1902 5 6 2.8744 3.3165 1.1966 6 6 2.9617 4.0296 -0.0008 7 6 3.4598 5.4204 -0.0017 8 8 3.5341 6.0383 -1.0448 9 8 3.8305 6.0037 1.1546 10 6 4.3095 7.3723 1.0785 11 6 4.6815 7.8610 2.4798 12 8 5.7868 7.1006 2.9718 13 6 6.2156 7.4788 4.2814 14 6 7.3791 6.6162 4.6976 15 1 7.7539 5.8555 4.0288 16 6 7.9658 6.7988 5.9319 17 7 8.9815 6.0464 6.2949 18 14 7.3180 8.1150 7.0885 19 1 6.2592 7.5359 7.9539 20 1 8.4284 8.6198 7.9354 21 1 6.7514 9.2354 6.2955 22 6 2.5751 3.4225 -1.1972 23 6 2.1104 2.1236 -1.1891 24 7 1.7005 1.4780 -2.4566 25 8 1.8768 2.0512 -3.5167 26 8 1.1869 0.3738 -2.4393 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3400 1.4659 2.1157 33 1 3.1719 3.7801 2.1256 34 1 5.1877 7.4146 0.4343 35 1 3.5262 8.0090 0.6673 36 1 4.9563 8.9148 2.4360 37 1 3.8285 7.7355 3.1467 38 1 6.5221 8.5247 4.2754 39 1 5.3943 7.3450 4.9854 40 1 9.3945 6.1751 7.1631 41 1 2.6397 3.9685 -2.1267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:00 Heat of formation + Delta-G solvation = -108.016023 kcal Electronic energy + Delta-G solvation = -26285.861616 eV Core-core repulsion = 22134.824251 eV Total energy + Delta-G solvation = -4151.037365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60830 -40.88595 -39.57745 -37.41026 -37.02042 -36.33017 -34.67531 -32.80209 -32.47225 -30.96467 -30.17272 -27.74337 -26.86551 -25.57119 -23.18890 -22.96293 -22.21772 -21.96194 -21.35216 -19.54281 -18.87340 -17.89601 -17.57375 -17.20897 -16.90413 -16.69193 -16.17898 -16.04013 -15.54486 -14.98402 -14.78640 -14.53801 -14.27811 -14.18398 -13.72335 -13.44424 -13.14642 -12.82356 -12.57749 -12.46376 -12.39946 -12.02233 -11.86857 -11.76941 -11.65938 -11.32219 -11.29671 -11.02874 -10.85691 -10.79579 -10.70487 -10.65775 -10.11842 -9.96467 -9.70056 -9.30971 -9.02573 -8.61242 -6.20834 -4.20886 -0.52604 0.01683 0.95528 1.02434 2.03047 2.34493 2.95896 3.16643 3.24172 3.24733 3.78954 3.85900 4.17962 4.25542 4.26142 4.30903 4.34430 4.59436 4.74961 4.86125 4.96881 5.00745 5.08832 5.10200 5.21455 5.22458 5.43288 5.45321 5.51766 5.54556 5.65576 5.68112 5.73313 5.79710 5.80775 6.17387 6.22913 6.44424 6.85785 7.37134 7.46744 7.47311 7.83639 8.52800 8.89790 9.37480 10.92054 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002422 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.087265 B =11558.387885 C =12544.555630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.016 3.984 4 C -0.130 4.130 5 C -0.002 4.002 6 C -0.125 4.125 7 C 0.511 3.489 8 O -0.501 6.501 9 O -0.334 6.334 10 C 0.076 3.924 11 C 0.057 3.943 12 O -0.376 6.376 13 C 0.169 3.831 14 C -0.522 4.522 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.266 1.266 22 C 0.009 3.991 23 C -0.060 4.060 24 N 0.034 4.966 25 O -0.164 6.164 26 O -0.150 6.150 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.001 0.999 40 H 0.267 0.733 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.444 -7.862 -11.049 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.014 3.986 4 C -0.148 4.148 5 C -0.021 4.021 6 C -0.127 4.127 7 C 0.355 3.645 8 O -0.391 6.391 9 O -0.250 6.250 10 C 0.002 3.998 11 C -0.021 4.021 12 O -0.295 6.295 13 C 0.094 3.906 14 C -0.560 4.560 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.010 4.010 23 C -0.144 4.144 24 N 0.551 4.449 25 O -0.378 6.378 26 O -0.366 6.366 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.077 0.923 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.973 -7.502 -10.692 22.218 hybrid contribution -0.302 0.971 0.479 1.124 sum -18.276 -6.531 -10.212 21.930 Atomic orbital electron populations 1.21676 0.92911 1.03053 1.02007 1.21116 0.97825 0.90108 1.05347 1.20242 0.90671 0.97225 0.90417 1.21236 1.00716 0.95239 0.97643 1.22127 0.88050 0.93108 0.98772 1.18985 1.06968 0.93051 0.93660 1.20680 0.74897 0.86528 0.82389 1.90865 1.50842 1.64520 1.32857 1.86597 1.74273 1.30976 1.33119 1.23298 0.99589 0.78023 0.98858 1.22414 0.91698 0.95297 0.92681 1.87976 1.47362 1.59218 1.34982 1.20644 0.94947 0.95674 0.79375 1.20859 1.13479 1.19299 1.02326 0.89942 1.24771 0.94684 0.96033 0.97436 1.69869 1.22647 1.39185 1.21451 0.86848 0.79071 0.82481 0.81317 1.19876 1.20700 1.19113 1.21010 0.88713 0.91325 0.99974 1.20683 1.13844 0.95369 0.84469 1.43433 0.98476 1.00514 1.02476 1.94583 1.59304 1.65541 1.18333 1.94463 1.42672 1.05765 1.93658 0.92115 0.91110 0.92706 0.87667 0.89673 0.82405 0.81700 0.89902 0.89876 0.91482 0.92914 0.97772 0.98149 0.92254 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.40 37.16 0.35 -0.54 16 2 C -0.11 -0.72 5.32 -27.88 -0.15 -0.87 16 3 C 0.02 0.13 5.14 -104.53 -0.54 -0.40 16 4 C -0.13 -0.94 9.65 -39.64 -0.38 -1.32 16 5 C 0.00 -0.02 9.62 -39.17 -0.38 -0.40 16 6 C -0.12 -1.36 5.87 -104.98 -0.62 -1.98 16 7 C 0.51 6.86 7.90 34.61 0.27 7.13 16 8 O -0.50 -7.67 16.14 -19.24 -0.31 -7.98 16 9 O -0.33 -4.77 9.44 -43.29 -0.41 -5.18 16 10 C 0.08 1.03 5.85 37.16 0.22 1.25 16 11 C 0.06 0.88 6.33 37.16 0.24 1.11 16 12 O -0.38 -8.18 10.30 -38.80 -0.40 -8.58 16 13 C 0.17 4.05 4.76 36.01 0.17 4.22 16 14 C -0.52 -14.96 9.99 -34.44 -0.34 -15.30 16 15 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 18 Si 0.88 20.53 27.47 -169.99 -4.67 15.87 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 22 C 0.01 0.10 9.10 -39.17 -0.36 -0.26 16 23 C -0.06 -0.62 6.82 -80.01 -0.55 -1.17 16 24 N 0.03 0.39 4.45 33.93 0.15 0.54 16 25 O -0.16 -2.14 18.46 -29.46 -0.54 -2.68 16 26 O -0.15 -1.68 13.52 -29.46 -0.40 -2.08 16 27 H 0.06 0.48 6.62 -51.93 -0.34 0.14 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 0.81 5.91 -51.93 -0.31 0.50 16 31 H 0.08 0.41 8.03 -51.93 -0.42 -0.01 16 32 H 0.16 0.71 8.05 -52.48 -0.42 0.29 16 33 H 0.17 1.40 7.61 -52.49 -0.40 1.00 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 39 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.17 1.81 7.21 -52.49 -0.38 1.43 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -33.20 359.11 -7.71 -40.91 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -5.16 Total: -3.62 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -2.16 Total: -6.56 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.92 Total: -25.50 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -2.06 Total: -26.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -7.71 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.107 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds