Wall clock time and date at job start Tue Mar 31 2020 14:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47251 * 2 1 4 4 C 1.38386 * 119.84900 * 97.41705 * 3 2 1 5 5 C 1.37921 * 120.14881 * 179.70410 * 4 3 2 6 6 C 1.39643 * 119.85075 * 0.27419 * 5 4 3 7 7 C 1.47731 * 120.15284 * 179.97438 * 6 5 4 8 8 O 1.21470 * 120.00032 * 180.02562 * 7 6 5 9 9 O 1.34706 * 119.99829 * 359.97438 * 7 6 5 10 10 C 1.45201 * 117.00001 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47265 * 65.00482 * 11 10 9 13 13 C 1.42901 * 114.00015 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46862 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99875 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99903 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99931 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46972 * 90.00123 * 18 16 14 20 20 H 1.48500 * 109.47017 * 209.99734 * 18 16 14 21 21 H 1.48495 * 109.47161 * 330.00102 * 18 16 14 22 22 C 1.39616 * 119.69906 * 0.02562 * 6 5 4 23 23 C 1.37957 * 119.84546 * 359.97438 * 22 6 5 24 24 N 1.48025 * 119.92499 * 180.02562 * 23 22 6 25 25 O 1.21796 * 119.99731 * 6.08844 * 24 23 22 26 26 O 1.21801 * 119.99870 * 186.09698 * 24 23 22 27 27 H 1.09005 * 109.46871 * 60.00555 * 1 2 3 28 28 H 1.09006 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47344 * 299.99985 * 1 2 3 30 30 H 1.09004 * 109.47327 * 239.99615 * 2 1 3 31 31 H 1.09007 * 109.47049 * 120.00205 * 2 1 3 32 32 H 1.08004 * 119.92346 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.07460 * 180.30107 * 5 4 3 34 34 H 1.08999 * 109.47313 * 300.00225 * 10 9 7 35 35 H 1.09000 * 109.47013 * 60.00495 * 10 9 7 36 36 H 1.08996 * 109.47247 * 185.00201 * 11 10 9 37 37 H 1.09000 * 109.47350 * 305.00131 * 11 10 9 38 38 H 1.08994 * 109.47241 * 299.99786 * 13 12 11 39 39 H 1.09001 * 109.47272 * 59.99677 * 13 12 11 40 40 H 0.97000 * 119.99904 * 179.97438 * 17 16 14 41 41 H 1.07995 * 120.07669 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4080 2.0185 1.1902 5 6 2.8744 3.3165 1.1966 6 6 2.9617 4.0296 -0.0008 7 6 3.4598 5.4204 -0.0017 8 8 3.5341 6.0383 -1.0448 9 8 3.8305 6.0037 1.1546 10 6 4.3095 7.3723 1.0785 11 6 4.6815 7.8610 2.4798 12 8 5.7868 7.1006 2.9718 13 6 6.2156 7.4788 4.2814 14 6 7.3791 6.6162 4.6976 15 1 7.7539 5.8555 4.0288 16 6 7.9658 6.7988 5.9319 17 7 8.9815 6.0464 6.2949 18 14 7.3180 8.1150 7.0885 19 1 6.2592 7.5359 7.9539 20 1 8.4284 8.6198 7.9354 21 1 6.7514 9.2354 6.2955 22 6 2.5751 3.4225 -1.1972 23 6 2.1104 2.1236 -1.1891 24 7 1.7005 1.4780 -2.4566 25 8 1.8768 2.0512 -3.5167 26 8 1.1869 0.3738 -2.4393 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3400 1.4659 2.1157 33 1 3.1719 3.7801 2.1256 34 1 5.1877 7.4146 0.4343 35 1 3.5262 8.0090 0.6673 36 1 4.9563 8.9148 2.4360 37 1 3.8285 7.7355 3.1467 38 1 6.5221 8.5247 4.2754 39 1 5.3943 7.3450 4.9854 40 1 9.3945 6.1751 7.1631 41 1 2.6397 3.9685 -2.1267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815215927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:59 Heat of formation + Delta-G solvation = -127.306471 kcal Electronic energy + Delta-G solvation = -26286.698113 eV Core-core repulsion = 22134.824251 eV Total energy + Delta-G solvation = -4151.873862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.49174 -41.88586 -40.43128 -38.83518 -37.95223 -37.56939 -35.37401 -34.88539 -33.26035 -32.04231 -31.18074 -29.58337 -27.72626 -26.38646 -24.14809 -23.94678 -23.77866 -23.05931 -22.27028 -20.46608 -19.78877 -19.11632 -18.79243 -18.55827 -17.99058 -17.94826 -17.11220 -16.91729 -16.87055 -16.42382 -16.26592 -15.43294 -15.13302 -14.95216 -14.83539 -14.59476 -14.38739 -14.15230 -13.87336 -13.43438 -13.21717 -13.09485 -13.00362 -12.75187 -12.65680 -12.59012 -12.41993 -12.33358 -12.14299 -11.91103 -11.85902 -11.77971 -11.46891 -11.35401 -10.92925 -10.87677 -10.43448 -10.40835 -8.36550 -6.45018 -1.35603 -0.80913 0.13125 0.18131 1.09848 1.35346 1.35522 1.38610 1.49132 2.14050 2.30365 2.93142 2.96646 3.05440 3.14601 3.36002 3.50211 3.56147 3.83627 3.88326 4.09891 4.13084 4.31383 4.35288 4.36472 4.40106 4.50311 4.58829 4.65890 4.69173 4.75677 4.81501 4.95695 5.00772 5.08505 5.14838 5.16320 5.27618 5.43473 5.44259 5.91116 6.40696 6.44165 6.59082 6.70808 7.19420 8.80540 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.002422 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.087265 B =11558.387885 C =12544.555630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.023 3.977 4 C -0.114 4.114 5 C 0.002 3.998 6 C -0.138 4.138 7 C 0.513 3.487 8 O -0.528 6.528 9 O -0.343 6.343 10 C 0.074 3.926 11 C 0.050 3.950 12 O -0.406 6.406 13 C 0.179 3.821 14 C -0.547 4.547 15 H 0.028 0.972 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.956 3.044 19 H -0.257 1.257 20 H -0.278 1.278 21 H -0.242 1.242 22 C 0.004 3.996 23 C -0.071 4.071 24 N 0.034 4.966 25 O -0.217 6.217 26 O -0.123 6.123 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.197 0.803 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.273 0.727 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.523 -7.497 -8.754 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.022 3.978 4 C -0.131 4.131 5 C -0.016 4.016 6 C -0.140 4.140 7 C 0.358 3.642 8 O -0.419 6.419 9 O -0.259 6.259 10 C 0.001 3.999 11 C -0.026 4.026 12 O -0.326 6.326 13 C 0.103 3.897 14 C -0.584 4.584 15 H 0.047 0.953 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.777 3.223 19 H -0.182 1.182 20 H -0.203 1.203 21 H -0.165 1.165 22 C -0.016 4.016 23 C -0.155 4.155 24 N 0.548 4.452 25 O -0.418 6.418 26 O -0.348 6.348 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.214 0.786 33 H 0.190 0.810 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.039 -7.057 -8.495 22.881 hybrid contribution 0.328 0.673 -0.245 0.788 sum -19.711 -6.384 -8.740 22.487 Atomic orbital electron populations 1.21684 0.92449 1.03863 1.01574 1.21220 0.98056 0.88820 1.06328 1.20601 0.89466 0.97976 0.89764 1.21622 0.98648 0.94380 0.98499 1.22284 0.87517 0.93743 0.98042 1.18878 1.08403 0.92131 0.94577 1.21056 0.74140 0.87230 0.81759 1.90846 1.52157 1.65367 1.33562 1.86585 1.74340 1.31419 1.33553 1.23368 1.00247 0.78471 0.97814 1.22764 0.90346 0.96012 0.93507 1.87919 1.49844 1.60911 1.33961 1.20362 0.93619 0.94837 0.80878 1.21168 1.15709 1.19338 1.02217 0.95344 1.25865 0.94592 0.98784 0.99364 1.70037 1.24366 1.41463 1.22421 0.85599 0.78790 0.79310 0.78579 1.18174 1.20316 1.16482 1.20907 0.89283 0.91733 0.99660 1.20794 1.14821 0.95452 0.84388 1.43630 0.98258 1.00472 1.02827 1.94594 1.61732 1.66192 1.19258 1.94429 1.41082 1.05555 1.93765 0.94117 0.89726 0.91557 0.88698 0.86700 0.78601 0.81003 0.91133 0.86734 0.89041 0.91007 0.96564 0.96406 0.91829 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.40 71.98 0.68 -0.72 16 2 C -0.11 -1.14 5.32 29.85 0.16 -0.98 16 3 C 0.02 0.34 5.14 -19.80 -0.10 0.24 16 4 C -0.11 -1.29 9.65 22.23 0.21 -1.08 16 5 C 0.00 0.04 9.62 22.53 0.22 0.25 16 6 C -0.14 -3.01 5.87 -20.10 -0.12 -3.13 16 7 C 0.51 13.90 7.90 70.33 0.56 14.45 16 8 O -0.53 -16.63 16.14 19.93 0.32 -16.31 16 9 O -0.34 -9.60 9.44 -53.49 -0.51 -10.11 16 10 C 0.07 1.93 5.85 71.98 0.42 2.35 16 11 C 0.05 1.44 6.33 71.98 0.46 1.90 16 12 O -0.41 -17.40 10.30 -145.57 -1.50 -18.90 16 13 C 0.18 8.30 4.76 71.24 0.34 8.64 16 14 C -0.55 -31.95 9.99 25.60 0.26 -31.69 16 15 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 18 Si 0.96 41.06 27.47 68.60 1.88 42.95 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 22 C 0.00 0.08 9.10 22.54 0.21 0.28 16 23 C -0.07 -1.45 6.82 36.33 0.25 -1.20 16 24 N 0.03 0.80 4.45 -46.55 -0.21 0.60 16 25 O -0.22 -6.08 18.46 18.89 0.35 -5.73 16 26 O -0.12 -2.71 13.52 18.89 0.26 -2.46 16 27 H 0.04 0.58 6.62 -2.38 -0.02 0.56 16 28 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.26 5.91 -2.38 -0.01 1.25 16 31 H 0.11 0.59 8.03 -2.38 -0.02 0.58 16 32 H 0.20 0.78 8.05 -2.91 -0.02 0.76 16 33 H 0.17 2.58 7.61 -2.91 -0.02 2.56 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 39 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.16 3.73 7.21 -2.91 -0.02 3.71 16 Total: -1.00 -75.63 359.11 5.89 -69.74 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.00 Total: 7.29 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.99 Total: -9.54 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.09 Total: -56.93 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -1.08 Total: -53.50 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.95 kcal Total: -75.63 5.89 -69.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.568 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds