Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35802 * 116.99865 * 2 1 4 4 C 1.38845 * 119.92464 * 0.02562 * 3 2 1 5 5 C 1.37781 * 120.15728 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.00273 * 180.02562 * 5 4 3 7 7 C 1.39769 * 119.99584 * 0.02562 * 5 4 3 8 8 C 1.47498 * 120.07580 * 180.02562 * 7 5 4 9 9 O 1.21619 * 120.00166 * 52.28059 * 8 7 5 10 10 N 1.34781 * 119.99611 * 232.27594 * 8 7 5 11 11 C 1.36909 * 119.99386 * 185.23137 * 10 8 7 12 12 H 1.07999 * 119.99858 * 16.84572 * 11 10 8 13 13 C 1.39019 * 119.99593 * 196.83558 * 11 10 8 14 14 N 1.31380 * 120.00206 * 14.36509 * 13 11 10 15 15 Si 1.86802 * 119.99459 * 194.36512 * 13 11 10 16 16 H 1.48496 * 109.47363 * 90.00375 * 15 13 11 17 17 H 1.48502 * 109.47022 * 209.99983 * 15 13 11 18 18 H 1.48501 * 109.47547 * 330.00142 * 15 13 11 19 19 C 1.46496 * 120.00542 * 5.23635 * 10 8 7 20 20 C 1.50697 * 109.46965 * 83.62656 * 19 10 8 21 21 O 1.20824 * 120.00156 * 359.97438 * 20 19 10 22 22 O 1.34232 * 120.00035 * 180.02562 * 20 19 10 23 23 C 1.39793 * 119.84465 * 0.02562 * 7 5 4 24 24 C 1.38122 * 119.84785 * 359.71783 * 23 7 5 25 25 O 1.36002 * 119.99945 * 180.27193 * 24 23 7 26 26 C 1.42897 * 117.00128 * 0.28269 * 25 24 23 27 27 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47432 * 59.99757 * 1 2 3 29 29 H 1.09002 * 109.47317 * 299.99748 * 1 2 3 30 30 H 1.07999 * 119.92263 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47382 * 86.01055 * 6 5 4 32 32 H 1.09001 * 109.47322 * 206.01488 * 6 5 4 33 33 H 1.09003 * 109.47072 * 326.01545 * 6 5 4 34 34 H 0.97005 * 119.99591 * 179.97438 * 14 13 11 35 35 H 1.08991 * 109.47208 * 203.62954 * 19 10 8 36 36 H 1.09000 * 109.46869 * 323.62564 * 19 10 8 37 37 H 0.96697 * 117.00138 * 180.02562 * 22 20 19 38 38 H 1.08005 * 120.07619 * 179.97438 * 23 7 5 39 39 H 1.09000 * 109.47236 * 179.97438 * 26 25 24 40 40 H 1.08999 * 109.47008 * 299.99547 * 26 25 24 41 41 H 1.09005 * 109.47121 * 59.99635 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2877 2.3735 0.0005 5 6 1.9082 3.6036 0.0011 6 6 1.0823 4.8641 0.0022 7 6 3.3037 3.6824 0.0005 8 6 3.9697 4.9984 0.0017 9 8 3.6698 5.8311 0.8358 10 7 4.9109 5.2781 -0.9217 11 6 5.6049 6.4564 -0.8565 12 1 5.6064 7.0323 0.0571 13 6 6.3077 6.9114 -1.9663 14 7 6.0873 6.3791 -3.1470 15 14 7.5654 8.2798 -1.7786 16 1 8.8972 7.6915 -1.4865 17 1 7.6359 9.0635 -3.0380 18 1 7.1629 9.1724 -0.6621 19 6 5.1911 4.3214 -1.9952 20 6 4.2000 4.5166 -3.1134 21 8 3.3468 5.3672 -3.0229 22 8 4.2645 3.7447 -4.2098 23 6 4.0666 2.5110 -0.0011 24 6 3.4378 1.2812 0.0037 25 8 4.1770 0.1396 0.0078 26 6 5.5984 0.2870 0.0130 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 0.5138 0.8900 30 1 0.2093 2.3140 0.0005 31 1 0.8238 5.1283 1.0277 32 1 1.6555 5.6745 -0.4482 33 1 0.1702 4.7014 -0.5719 34 1 6.5775 6.6969 -3.9214 35 1 6.2009 4.4837 -2.3721 36 1 5.1068 3.3059 -1.6080 37 1 3.6076 3.9075 -4.9005 38 1 5.1451 2.5675 -0.0019 39 1 6.0658 -0.6977 0.0163 40 1 5.9101 0.8346 -0.8764 41 1 5.9034 0.8366 0.9036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831961627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = -173.544989 kcal Electronic energy + Delta-G solvation = -29072.459077 eV Core-core repulsion = 24918.580163 eV Total energy + Delta-G solvation = -4153.878915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97618 -41.02991 -40.03622 -39.43372 -37.87638 -37.00155 -36.40305 -33.91587 -32.91048 -31.58198 -29.52727 -29.05583 -28.08399 -27.63197 -26.37968 -23.91513 -22.80412 -22.74956 -21.11082 -19.39165 -18.98743 -18.79579 -18.43380 -17.93617 -17.45847 -17.24437 -17.02168 -16.49963 -16.27623 -16.12257 -15.91957 -15.55480 -15.35085 -15.33240 -14.78719 -14.45011 -14.23609 -13.72414 -13.67612 -13.42244 -13.30671 -13.21021 -13.09624 -12.76996 -12.68159 -12.46537 -12.32336 -12.18565 -12.16281 -12.08230 -12.05028 -11.68839 -11.49105 -10.99272 -10.55880 -9.97380 -9.70032 -8.80015 -8.44752 -6.01236 -0.01196 0.24577 1.36986 1.42052 1.54256 1.67410 1.84687 2.19258 2.28240 2.32873 2.43998 2.63565 2.94449 3.11854 3.62941 3.70969 3.87618 4.07716 4.15943 4.25350 4.39070 4.44073 4.46297 4.46769 4.48895 4.65623 4.73004 4.74720 4.76909 4.79575 4.82904 4.92301 5.02197 5.15681 5.39509 5.50041 5.52599 5.90336 5.97060 6.06289 6.35187 6.54494 7.03606 7.22886 7.40410 7.85459 8.59584 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.004710 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.338771 B = 5942.847297 C = 6193.511996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.111 3.889 4 C -0.167 4.167 5 C -0.052 4.052 6 C -0.102 4.102 7 C -0.126 4.126 8 C 0.495 3.505 9 O -0.612 6.612 10 N -0.432 5.432 11 C -0.335 4.335 12 H 0.083 0.917 13 C -0.001 4.001 14 N -0.897 5.897 15 Si 0.999 3.001 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.136 3.864 20 C 0.499 3.501 21 O -0.549 6.549 22 O -0.518 6.518 23 C -0.153 4.153 24 C 0.088 3.912 25 O -0.316 6.316 26 C 0.012 3.988 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.277 0.723 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.413 0.587 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.061 0.939 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -15.098 0.377 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.053 4.053 6 C -0.159 4.159 7 C -0.130 4.130 8 C 0.286 3.714 9 O -0.499 6.499 10 N -0.150 5.150 11 C -0.462 4.462 12 H 0.101 0.899 13 C -0.202 4.202 14 N -0.537 5.537 15 Si 0.822 3.178 16 H -0.182 1.182 17 H -0.204 1.204 18 H -0.203 1.203 19 C 0.011 3.989 20 C 0.341 3.659 21 O -0.438 6.438 22 O -0.330 6.330 23 C -0.173 4.173 24 C 0.042 3.958 25 O -0.230 6.230 26 C -0.082 4.082 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.272 0.728 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.080 0.920 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.796 -14.890 0.899 15.669 hybrid contribution 0.177 1.683 -0.638 1.809 sum -4.619 -13.207 0.261 13.994 Atomic orbital electron populations 1.23440 0.76258 1.05894 1.02481 1.86101 1.23483 1.25045 1.88498 1.18421 0.89056 0.85711 1.00329 1.21014 1.01315 0.89103 1.07105 1.19760 0.91852 0.96106 0.97593 1.20667 0.98936 0.93664 1.02584 1.19669 0.94402 0.92538 1.06363 1.18405 0.80217 0.87993 0.84800 1.90574 1.65593 1.50932 1.42815 1.43475 1.31848 1.17319 1.22312 1.19759 1.25955 1.00965 0.99509 0.89872 1.26056 1.00044 1.00729 0.93361 1.69804 1.40693 1.44044 0.99139 0.84839 0.78173 0.77264 0.77475 1.18162 1.20414 1.20305 1.21122 0.99600 0.93094 0.85107 1.23773 0.82611 0.76680 0.82786 1.90582 1.38458 1.34150 1.80655 1.84446 1.59154 1.59826 1.29581 1.21181 1.00609 0.89945 1.05538 1.18066 0.88886 0.85673 1.03134 1.86125 1.20459 1.27284 1.89151 1.23415 0.76878 1.05832 1.02058 0.85811 0.91592 0.91457 0.81121 0.90463 0.94875 0.89209 0.91280 0.85099 0.87368 0.72811 0.83276 0.85250 0.92022 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.26 10.27 -77.32 -0.79 -9.06 16 3 C 0.11 3.36 6.71 22.70 0.15 3.51 16 4 C -0.17 -4.92 8.68 22.31 0.19 -4.73 16 5 C -0.05 -1.95 5.91 -19.60 -0.12 -2.07 16 6 C -0.10 -3.84 9.19 71.23 0.65 -3.19 16 7 C -0.13 -5.36 5.02 -20.09 -0.10 -5.46 16 8 C 0.49 25.84 5.84 86.68 0.51 26.34 16 9 O -0.61 -36.24 15.50 -4.09 -0.06 -36.30 16 10 N -0.43 -22.63 2.18 -643.26 -1.40 -24.03 16 11 C -0.33 -18.85 9.36 84.09 0.79 -18.06 16 12 H 0.08 4.99 7.37 -2.91 -0.02 4.97 16 13 C 0.00 -0.05 5.06 84.95 0.43 0.38 16 14 N -0.90 -46.21 9.03 21.68 0.20 -46.01 16 15 Si 1.00 41.72 29.58 68.60 2.03 43.75 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.14 6.10 4.93 85.63 0.42 6.53 16 20 C 0.50 22.82 6.51 71.24 0.46 23.29 16 21 O -0.55 -29.50 16.93 21.97 0.37 -29.13 16 22 O -0.52 -18.68 13.42 -51.44 -0.69 -19.37 16 23 C -0.15 -5.45 6.60 22.62 0.15 -5.30 16 24 C 0.09 2.84 6.69 22.53 0.15 2.99 16 25 O -0.32 -9.06 10.28 -79.55 -0.82 -9.88 16 26 C 0.01 0.26 9.81 113.37 1.11 1.37 16 27 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 29 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 30 H 0.17 3.66 6.27 -2.91 -0.02 3.64 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.03 1.56 6.57 -2.39 -0.02 1.55 16 33 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 34 H 0.28 13.45 8.31 -92.70 -0.77 12.68 16 35 H 0.13 6.01 6.11 -2.39 -0.01 5.99 16 36 H 0.11 4.14 4.27 -2.39 -0.01 4.13 16 37 H 0.41 11.21 9.10 -74.06 -0.67 10.54 16 38 H 0.15 4.87 5.31 -2.91 -0.02 4.85 16 39 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.23 7.65 -2.39 -0.02 1.21 16 41 H 0.06 1.18 7.67 -2.38 -0.02 1.16 16 Total: -1.00 -78.47 345.08 5.18 -73.30 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.43 Total: 29.82 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 5.92 Total: 26.92 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.21 Total: -70.04 kcal Atomic # 8 Polarization: -101.75 SS G_CDS: -1.99 Total: -103.74 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -78.47 5.18 -73.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831961627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.249 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds