Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38522 * 120.86249 * 2 1 4 4 Cl 1.73602 * 120.35711 * 359.97438 * 3 2 1 5 5 C 1.38424 * 119.27877 * 180.02562 * 3 2 1 6 6 N 1.31954 * 121.05900 * 359.97438 * 5 3 2 7 7 C 1.31661 * 121.89756 * 359.70219 * 6 5 3 8 8 C 1.39564 * 120.59209 * 0.58401 * 7 6 5 9 9 C 1.47845 * 120.55229 * 179.70422 * 8 7 6 10 10 O 1.21553 * 120.00098 * 142.79405 * 9 8 7 11 11 N 1.34773 * 119.99554 * 322.79249 * 9 8 7 12 12 C 1.47421 * 125.65434 * 354.86661 * 11 9 8 13 13 C 1.54912 * 104.83352 * 204.09385 * 12 11 9 14 14 C 1.55160 * 101.58214 * 322.99123 * 13 12 11 15 15 H 1.09000 * 110.71637 * 277.14145 * 14 13 12 16 16 N 1.46495 * 110.72061 * 153.86782 * 14 13 12 17 17 C 1.36938 * 120.00270 * 91.47482 * 16 14 13 18 18 H 1.07994 * 119.99893 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00035 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00010 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47391 * 90.00156 * 21 19 17 23 23 H 1.48504 * 109.46966 * 210.00006 * 21 19 17 24 24 H 1.48502 * 109.46798 * 329.99680 * 21 19 17 25 25 C 1.47033 * 125.64434 * 174.82578 * 11 9 8 26 26 H 1.08997 * 109.88253 * 298.54986 * 25 11 9 27 27 C 1.53004 * 109.87704 * 59.56023 * 25 11 9 28 28 H 1.08997 * 109.47774 * 264.67600 * 1 2 3 29 29 H 1.09007 * 109.46750 * 24.67641 * 1 2 3 30 30 H 1.08998 * 109.47162 * 144.66645 * 1 2 3 31 31 H 1.07997 * 119.46927 * 179.97438 * 5 3 2 32 32 H 1.07995 * 119.70831 * 180.31596 * 7 6 5 33 33 H 1.08998 * 110.36697 * 322.93316 * 12 11 9 34 34 H 1.09004 * 110.36509 * 85.25604 * 12 11 9 35 35 H 1.08994 * 111.00540 * 81.06532 * 13 12 11 36 36 H 1.08996 * 111.00228 * 204.87833 * 13 12 11 37 37 H 0.97000 * 119.99939 * 271.48297 * 16 14 13 38 38 H 0.97003 * 119.99810 * 180.02562 * 20 19 17 39 39 H 1.08995 * 109.47504 * 58.54966 * 27 25 11 40 40 H 1.09003 * 109.46408 * 178.54581 * 27 25 11 41 41 H 1.08998 * 109.47235 * 298.54273 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2176 1.1891 0.0000 4 17 1.3818 2.7106 -0.0007 5 6 3.6013 1.1508 -0.0005 6 7 4.2506 0.0021 -0.0005 7 6 3.6198 -1.1536 0.0058 8 6 2.2250 -1.2015 0.0005 9 6 1.5176 -2.4997 0.0010 10 8 0.4881 -2.6307 0.6339 11 7 2.0142 -3.5379 -0.7003 12 6 3.1872 -3.4900 -1.5920 13 6 2.9792 -4.6612 -2.5843 14 6 2.3476 -5.7399 -1.6651 15 1 3.1199 -6.2796 -1.1171 16 7 1.5204 -6.6647 -2.4438 17 6 2.0694 -7.8106 -2.9543 18 1 3.1121 -8.0328 -2.7825 19 6 1.2856 -8.6866 -3.6927 20 7 0.0148 -8.4155 -3.9025 21 14 2.0343 -10.2502 -4.3884 22 1 1.8930 -11.3492 -3.3999 23 1 1.3314 -10.6198 -5.6433 24 1 3.4738 -10.0245 -4.6754 25 6 1.4763 -4.9063 -0.7021 26 1 1.5255 -5.3253 0.3029 27 6 0.0263 -4.8946 -1.1904 28 1 -0.3634 -0.0953 1.0232 29 1 -0.3633 0.9339 -0.4291 30 1 -0.3633 -0.8384 -0.5943 31 1 4.1584 2.0760 -0.0010 32 1 4.1867 -2.0727 0.0107 33 1 3.2186 -2.5407 -2.1267 34 1 4.1042 -3.6351 -1.0207 35 1 2.2938 -4.3790 -3.3835 36 1 3.9311 -5.0023 -2.9911 37 1 0.5837 -6.4652 -2.5980 38 1 -0.5330 -9.0279 -4.4182 39 1 -0.0164 -4.4675 -2.1922 40 1 -0.3574 -5.9147 -1.2136 41 1 -0.5804 -4.2936 -0.5130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986381000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = 17.506592 kcal Electronic energy + Delta-G solvation = -25165.471167 eV Core-core repulsion = 21492.878786 eV Total energy + Delta-G solvation = -3672.592381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14693 -39.62545 -37.60254 -37.05575 -34.37775 -34.07538 -32.32564 -31.13970 -30.74110 -29.06915 -28.08056 -25.36407 -24.95743 -23.58837 -22.63891 -22.53334 -20.10048 -18.94597 -17.88825 -17.44962 -17.08320 -16.74507 -15.97967 -15.58788 -15.11191 -14.98470 -14.56226 -14.18614 -13.73002 -13.61188 -13.27508 -13.20919 -13.13867 -12.84679 -12.52025 -12.37447 -12.24415 -12.12971 -11.82990 -11.64195 -11.53066 -11.27513 -11.02561 -10.85313 -10.53799 -10.41705 -10.20547 -10.05937 -9.86181 -9.76141 -9.52978 -9.34514 -9.00294 -8.54572 -7.08516 -5.86491 -3.16741 0.27882 0.63016 1.58802 2.61303 2.91913 3.33592 3.38311 3.43810 3.45400 3.94741 4.17238 4.21145 4.30525 4.50936 4.74476 4.82828 4.93321 5.12929 5.18697 5.27610 5.33677 5.43618 5.45731 5.50766 5.56609 5.70013 5.74099 5.86789 5.95570 6.03848 6.05444 6.15665 6.24063 6.48401 6.49028 6.62796 6.76053 6.91281 7.35752 7.56190 7.61778 8.10547 8.31729 9.43608 9.97646 10.32450 11.35773 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.028665 B = 0.002765 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.573220 B =10123.077511 C =10595.720965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.021 3.979 3 C -0.103 4.103 4 Cl -0.047 7.047 5 C 0.133 3.867 6 N -0.475 5.475 7 C 0.138 3.862 8 C -0.167 4.167 9 C 0.576 3.424 10 O -0.526 6.526 11 N -0.600 5.600 12 C 0.092 3.908 13 C -0.154 4.154 14 C 0.174 3.826 15 H 0.068 0.932 16 N -0.716 5.716 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.075 0.925 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.257 0.743 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.794 20.287 7.654 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.012 3.988 3 C -0.132 4.132 4 Cl -0.018 7.018 5 C -0.024 4.024 6 N -0.183 5.183 7 C -0.019 4.019 8 C -0.173 4.173 9 C 0.363 3.637 10 O -0.403 6.403 11 N -0.333 5.333 12 C -0.031 4.031 13 C -0.195 4.195 14 C 0.062 3.938 15 H 0.086 0.914 16 N -0.358 5.358 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.024 3.976 26 H 0.093 0.907 27 C -0.218 4.218 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.189 0.811 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.111 20.221 7.954 22.572 hybrid contribution -0.731 -0.602 -0.562 1.101 sum 5.380 19.619 7.392 21.645 Atomic orbital electron populations 1.20983 0.88296 1.03862 1.04589 1.20295 0.98040 0.89832 0.90594 1.21885 0.93983 0.87918 1.09375 1.98377 1.78135 1.28452 1.96884 1.22969 0.89326 0.97396 0.92728 1.67894 1.39424 0.97758 1.13261 1.23349 0.90552 0.96898 0.91126 1.20924 0.95128 0.94091 1.07142 1.17465 0.84224 0.82277 0.79736 1.90783 1.22950 1.83011 1.43579 1.48509 1.30512 1.09949 1.44373 1.22579 0.87918 1.00544 0.92080 1.23585 1.02429 0.95267 0.98224 1.21180 0.92412 0.89501 0.90693 0.91435 1.42650 1.10470 1.21771 1.60944 1.19242 0.94788 0.97168 1.26563 0.91001 1.24762 0.95771 0.99113 1.00952 1.69659 1.05519 1.37932 1.44664 0.86175 0.78119 0.83422 0.78338 1.21629 1.21758 1.20691 1.21975 0.95366 0.79984 1.00241 0.90735 1.22025 0.95220 1.03404 1.01117 0.88889 0.90624 0.89646 0.81407 0.81138 0.91284 0.91252 0.90618 0.90301 0.77089 0.93328 0.92589 0.90067 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 8.51 36.00 0.31 -1.01 16 2 C 0.02 0.24 5.95 -103.87 -0.62 -0.37 16 3 C -0.10 -1.01 6.33 -39.41 -0.25 -1.26 16 4 Cl -0.05 -0.40 27.37 -51.86 -1.42 -1.82 16 5 C 0.13 1.23 10.97 -17.43 -0.19 1.04 16 6 N -0.47 -5.07 10.34 -12.88 -0.13 -5.20 16 7 C 0.14 1.49 9.38 -17.13 -0.16 1.33 16 8 C -0.17 -2.05 5.40 -104.82 -0.57 -2.62 16 9 C 0.58 8.42 6.80 -12.33 -0.08 8.33 16 10 O -0.53 -9.02 13.79 5.32 0.07 -8.94 16 11 N -0.60 -8.60 3.08 -164.11 -0.51 -9.10 16 12 C 0.09 1.12 5.23 -2.53 -0.01 1.10 16 13 C -0.15 -2.35 6.77 -24.58 -0.17 -2.52 16 14 C 0.17 3.15 3.48 -66.10 -0.23 2.92 16 15 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 16 N -0.72 -16.63 4.94 -51.66 -0.26 -16.88 16 17 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 21 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.13 2.12 3.51 -66.95 -0.23 1.88 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 C -0.16 -2.86 7.92 37.16 0.29 -2.57 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.70 6.81 -51.93 -0.35 0.34 16 30 H 0.08 1.06 6.87 -51.93 -0.36 0.70 16 31 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.17 1.58 5.85 -52.49 -0.31 1.27 16 33 H 0.07 0.77 7.29 -51.93 -0.38 0.39 16 34 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.39 9.67 5.06 -40.82 -0.21 9.46 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 40 H 0.08 1.60 6.82 -51.93 -0.35 1.25 16 41 H 0.06 1.11 6.60 -51.93 -0.34 0.77 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -29.77 344.29 -8.67 -38.44 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.16 Total: 8.76 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.16 Total: -0.66 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.17 Total: -57.47 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.42 Total: -1.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.77 -8.67 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986381000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.947 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds