Wall clock time and date at job start Tue Mar 31 2020 13:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38514 * 120.86005 * 2 1 4 4 Cl 1.73598 * 120.36212 * 359.97438 * 3 2 1 5 5 C 1.38422 * 119.27424 * 179.97438 * 3 2 1 6 6 N 1.31946 * 121.06720 * 0.02562 * 5 3 2 7 7 C 1.31663 * 121.88947 * 359.68166 * 6 5 3 8 8 C 1.39554 * 120.59547 * 0.58478 * 7 6 5 9 9 C 1.47847 * 120.55386 * 179.72649 * 8 7 6 10 10 O 1.21558 * 119.99693 * 126.02733 * 9 8 7 11 11 N 1.34768 * 120.00374 * 306.03085 * 9 8 7 12 12 C 1.46930 * 120.63065 * 354.22525 * 11 9 8 13 13 C 1.53190 * 108.77942 * 233.63021 * 12 11 9 14 14 C 1.53037 * 109.31088 * 305.36570 * 13 12 11 15 15 C 1.53039 * 109.53904 * 61.36404 * 14 13 12 16 16 H 1.09004 * 109.49754 * 58.58446 * 15 14 13 17 17 N 1.46501 * 109.52444 * 178.66549 * 15 14 13 18 18 C 1.36936 * 120.00414 * 204.91702 * 17 15 14 19 19 H 1.08005 * 119.99460 * 0.02562 * 18 17 15 20 20 C 1.38803 * 120.00337 * 179.97438 * 18 17 15 21 21 N 1.31625 * 120.00476 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99957 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47189 * 89.99973 * 22 20 18 24 24 H 1.48505 * 109.46947 * 209.99557 * 22 20 18 25 25 H 1.48498 * 109.46909 * 329.99783 * 22 20 18 26 26 C 1.46923 * 120.63563 * 174.24760 * 11 9 8 27 27 H 1.09003 * 109.47153 * 274.97767 * 1 2 3 28 28 H 1.08998 * 109.47025 * 34.97856 * 1 2 3 29 29 H 1.08999 * 109.47077 * 154.98072 * 1 2 3 30 30 H 1.08002 * 119.46666 * 179.97438 * 5 3 2 31 31 H 1.07993 * 119.69886 * 180.28977 * 7 6 5 32 32 H 1.09004 * 109.58681 * 353.42075 * 12 11 9 33 33 H 1.09004 * 109.58632 * 113.84036 * 12 11 9 34 34 H 1.08998 * 109.49123 * 65.31297 * 13 12 11 35 35 H 1.09002 * 109.49834 * 185.37738 * 13 12 11 36 36 H 1.08997 * 109.46104 * 301.33932 * 14 13 12 37 37 H 1.09004 * 109.45788 * 181.38071 * 14 13 12 38 38 H 0.97004 * 119.99878 * 24.92143 * 17 15 14 39 39 H 0.96996 * 120.00209 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.58478 * 6.58322 * 26 11 9 41 41 H 1.08995 * 109.70877 * 246.23150 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3818 2.7106 -0.0007 5 6 3.6012 1.1507 0.0005 6 7 4.2506 0.0021 0.0005 7 6 3.6197 -1.1535 0.0063 8 6 2.2250 -1.2015 0.0003 9 6 1.5176 -2.4997 0.0007 10 8 0.6794 -2.7349 0.8490 11 7 1.8021 -3.4224 -0.9395 12 6 2.7184 -3.1078 -2.0441 13 6 2.0180 -3.4205 -3.3702 14 6 1.5275 -4.8701 -3.3539 15 6 0.5180 -5.0561 -2.2188 16 1 -0.3177 -4.3705 -2.3591 17 7 0.0248 -6.4356 -2.2234 18 6 -1.2004 -6.7266 -1.6856 19 1 -1.8033 -5.9389 -1.2583 20 6 -1.6679 -8.0335 -1.6904 21 7 -2.8459 -8.3131 -1.1739 22 14 -0.6254 -9.3957 -2.4301 23 1 0.2495 -9.9754 -1.3795 24 1 -1.5107 -10.4551 -2.9771 25 1 0.2138 -8.8394 -3.5217 26 6 1.2015 -4.7620 -0.8797 27 1 -0.3633 0.0892 1.0238 28 1 -0.3633 0.8420 -0.5891 29 1 -0.3633 -0.9312 -0.4346 30 1 4.1583 2.0760 0.0001 31 1 4.1868 -2.0726 0.0108 32 1 2.9820 -2.0506 -2.0105 33 1 3.6199 -3.7142 -1.9551 34 1 1.1682 -2.7503 -3.4995 35 1 2.7190 -3.2823 -4.1934 36 1 2.3746 -5.5384 -3.1997 37 1 1.0503 -5.1026 -4.3060 38 1 0.5662 -7.1430 -2.6075 39 1 -3.1724 -9.2264 -1.1770 40 1 0.4641 -4.7963 -0.0778 41 1 1.9774 -5.5047 -0.6946 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999413932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:19 Heat of formation + Delta-G solvation = -13.079022 kcal Electronic energy + Delta-G solvation = -25210.949265 eV Core-core repulsion = 21537.030592 eV Total energy + Delta-G solvation = -3673.918672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14108 -40.58518 -38.79081 -37.77227 -36.37734 -35.04028 -34.12919 -32.97448 -32.50543 -30.43027 -29.18519 -26.97193 -25.70587 -24.99541 -23.58542 -23.13723 -22.00393 -20.53276 -19.56199 -18.78496 -18.15429 -17.54742 -17.31147 -16.77905 -16.29920 -16.20421 -15.67978 -15.63792 -15.32457 -15.12048 -14.83640 -14.32134 -14.19770 -14.09255 -14.03702 -13.91333 -13.78736 -13.38112 -13.07942 -13.01259 -12.95631 -12.59298 -12.29022 -12.10188 -11.95602 -11.90263 -11.81977 -11.49225 -11.40155 -11.11557 -10.76918 -10.57239 -10.08982 -9.89080 -9.28772 -8.04439 -5.40944 -0.49827 -0.21017 0.83556 1.37276 1.42401 1.46611 1.50016 1.82237 2.41048 2.47490 3.11600 3.26431 3.33994 3.36651 3.43993 3.50564 3.88765 3.91919 4.01648 4.03749 4.10467 4.25383 4.34434 4.36551 4.47286 4.50947 4.55321 4.65762 4.82819 4.86389 4.88275 4.96274 4.98737 5.10590 5.22180 5.34319 5.40394 5.43197 5.74101 6.18911 6.27760 6.56439 6.95648 7.04975 7.77145 7.99310 9.17300 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.003070 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.520122 B = 9119.674089 C = 9653.022552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.005 3.995 3 C -0.098 4.098 4 Cl -0.034 7.034 5 C 0.142 3.858 6 N -0.478 5.478 7 C 0.149 3.851 8 C -0.176 4.176 9 C 0.559 3.441 10 O -0.574 6.574 11 N -0.593 5.593 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.170 3.830 16 H 0.028 0.972 17 N -0.743 5.743 18 C -0.238 4.238 19 H 0.044 0.956 20 C -0.065 4.065 21 N -0.986 5.986 22 Si 0.963 3.037 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.242 1.242 26 C 0.105 3.895 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.200 0.800 31 H 0.188 0.812 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.371 0.629 39 H 0.259 0.741 40 H 0.048 0.952 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.621 21.681 -3.759 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.004 4.004 3 C -0.127 4.127 4 Cl -0.006 7.006 5 C -0.015 4.015 6 N -0.186 5.186 7 C -0.009 4.009 8 C -0.182 4.182 9 C 0.347 3.653 10 O -0.454 6.454 11 N -0.325 5.325 12 C -0.022 4.022 13 C -0.160 4.160 14 C -0.159 4.159 15 C 0.060 3.940 16 H 0.046 0.954 17 N -0.386 5.386 18 C -0.368 4.368 19 H 0.062 0.938 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.789 3.211 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.166 1.166 26 C -0.020 4.020 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.217 0.783 31 H 0.205 0.795 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.205 0.795 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.808 21.718 -3.253 29.574 hybrid contribution -1.614 -1.176 0.191 2.006 sum 18.194 20.542 -3.062 27.611 Atomic orbital electron populations 1.20910 0.89105 1.03583 1.04086 1.20323 0.97694 0.90583 0.91753 1.21883 0.94365 0.87768 1.08725 1.98392 1.78059 1.27382 1.96727 1.23456 0.89044 0.98133 0.90908 1.67998 1.39193 0.97906 1.13510 1.23328 0.89171 0.97768 0.90630 1.20706 0.96027 0.92571 1.08882 1.18435 0.81690 0.83915 0.81300 1.90826 1.34706 1.79856 1.39998 1.48200 1.46070 1.12458 1.25798 1.22220 0.92470 1.02823 0.84709 1.21865 1.01218 0.95176 0.97781 1.21796 0.98422 0.98147 0.97526 1.20626 0.94787 0.85018 0.93541 0.95370 1.42630 1.18573 1.05357 1.72043 1.18947 0.94004 0.93499 1.30399 0.93755 1.25619 0.98177 0.99977 1.01811 1.69918 1.21224 1.19795 1.52602 0.85310 0.78169 0.78523 0.79128 1.20314 1.22404 1.16608 1.22278 0.97449 0.82077 1.00234 0.89494 0.88458 0.92598 0.78314 0.79536 0.88533 0.87930 0.92561 0.86749 0.89940 0.91366 0.79454 0.93258 0.93360 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.90 71.24 0.63 -2.15 16 2 C 0.01 0.12 5.95 -19.38 -0.12 0.00 16 3 C -0.10 -1.65 6.33 22.38 0.14 -1.51 16 4 Cl -0.03 -0.50 27.57 -2.72 -0.07 -0.58 16 5 C 0.14 2.00 10.97 84.72 0.93 2.92 16 6 N -0.48 -7.91 10.34 -194.68 -2.01 -9.93 16 7 C 0.15 2.61 8.97 85.04 0.76 3.37 16 8 C -0.18 -4.03 4.61 -20.00 -0.09 -4.13 16 9 C 0.56 17.06 6.18 86.79 0.54 17.60 16 10 O -0.57 -23.41 15.46 -3.90 -0.06 -23.47 16 11 N -0.59 -16.18 2.97 -822.32 -2.44 -18.63 16 12 C 0.10 1.69 5.59 86.36 0.48 2.17 16 13 C -0.12 -2.17 6.08 30.67 0.19 -1.98 16 14 C -0.12 -3.01 5.36 30.62 0.16 -2.84 16 15 C 0.17 6.23 2.92 45.07 0.13 6.36 16 16 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 17 N -0.74 -33.80 4.93 -322.57 -1.59 -35.39 16 18 C -0.24 -13.77 10.41 84.03 0.87 -12.89 16 19 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 20 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 21 N -0.99 -64.39 13.97 21.65 0.30 -64.08 16 22 Si 0.96 44.75 27.74 68.60 1.90 46.65 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.24 -9.77 6.52 99.48 0.65 -9.12 16 26 C 0.10 3.69 6.03 86.36 0.52 4.21 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.10 1.81 7.24 -2.39 -0.02 1.79 16 29 H 0.05 1.58 6.69 -2.39 -0.02 1.57 16 30 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.19 2.46 7.76 -2.91 -0.02 2.44 16 32 H 0.10 1.36 5.39 -2.38 -0.01 1.35 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.37 15.61 5.66 -92.71 -0.52 15.08 16 39 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 40 H 0.05 2.18 7.00 -2.39 -0.02 2.16 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -77.30 346.76 2.13 -75.17 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.48 Total: 22.49 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.62 Total: 7.76 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -5.75 Total: -128.03 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.07 Total: -0.58 kcal Total: -77.30 2.13 -75.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999413932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.092 kcal (2) G-P(sol) polarization free energy of solvation -77.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds