Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58727 * 2 1 4 4 C 1.53198 * 109.58592 * 239.57139 * 2 1 3 5 5 C 1.53033 * 109.31131 * 185.58102 * 4 2 1 6 6 C 1.53036 * 109.53993 * 61.36886 * 5 4 2 7 7 H 1.08999 * 109.53031 * 58.59900 * 6 5 4 8 8 N 1.46500 * 109.49723 * 178.68400 * 6 5 4 9 9 C 1.34779 * 119.99936 * 204.83708 * 8 6 5 10 10 O 1.21517 * 119.99959 * 359.97438 * 9 8 6 11 11 C 1.48075 * 119.99768 * 180.02562 * 9 8 6 12 12 C 1.39859 * 120.93550 * 0.02562 * 11 9 8 13 13 C 1.38090 * 119.01984 * 179.97438 * 12 11 9 14 14 N 1.31845 * 120.93955 * 0.02562 * 13 12 11 15 15 C 1.31757 * 122.07077 * 359.95573 * 14 13 12 16 16 C 1.38353 * 120.87248 * 0.03783 * 15 14 13 17 17 Cl 1.73602 * 120.51838 * 180.25626 * 16 15 14 18 18 C 1.53191 * 109.30977 * 298.63116 * 6 5 4 19 19 N 1.46922 * 109.58556 * 120.28524 * 2 1 3 20 20 C 1.36939 * 120.63207 * 353.37086 * 19 2 1 21 21 H 1.08006 * 119.99823 * 29.04275 * 20 19 2 22 22 C 1.38809 * 120.00423 * 209.03765 * 20 19 2 23 23 N 1.31621 * 119.99786 * 15.01449 * 22 20 19 24 24 Si 1.86803 * 120.00396 * 195.01251 * 22 20 19 25 25 H 1.48503 * 109.46993 * 90.00070 * 24 22 20 26 26 H 1.48491 * 109.46855 * 210.00101 * 24 22 20 27 27 H 1.48491 * 109.46890 * 330.00393 * 24 22 20 28 28 H 1.08998 * 109.46908 * 299.71820 * 1 2 3 29 29 H 1.09002 * 109.46849 * 59.71457 * 1 2 3 30 30 H 1.08997 * 109.47437 * 179.71578 * 1 2 3 31 31 H 1.09001 * 109.49715 * 305.53583 * 4 2 1 32 32 H 1.09004 * 109.49364 * 65.62437 * 4 2 1 33 33 H 1.08994 * 109.46088 * 301.34129 * 5 4 2 34 34 H 1.09007 * 109.45796 * 181.38669 * 5 4 2 35 35 H 0.97003 * 120.00006 * 24.83356 * 8 6 5 36 36 H 1.08002 * 120.49202 * 359.96108 * 12 11 9 37 37 H 1.07995 * 119.52943 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.56254 * 180.02562 * 15 14 13 39 39 H 1.09006 * 109.58544 * 174.42427 * 18 6 5 40 40 H 1.09001 * 109.58847 * 294.84611 * 18 6 5 41 41 H 0.96996 * 120.00470 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5674 -0.8496 -1.1691 6 6 3.9568 -1.6658 0.0655 7 1 3.4986 -2.6532 0.0089 8 7 5.4141 -1.8054 0.1197 9 6 5.9676 -2.8457 0.7739 10 8 5.2578 -3.6676 1.3192 11 6 7.4406 -2.9864 0.8292 12 6 8.2760 -2.0511 0.2100 13 6 9.6443 -2.2205 0.2868 14 7 10.1652 -3.2458 0.9315 15 6 9.4162 -4.1501 1.5293 16 6 8.0359 -4.0587 1.5029 17 17 7.0580 -5.2517 2.2992 18 6 3.4650 -0.9454 1.3248 19 7 2.0225 -0.6981 1.1953 20 6 1.1537 -1.1100 2.1704 21 1 0.1359 -1.3649 1.9142 22 6 1.5811 -1.2000 3.4880 23 7 2.7044 -0.6215 3.8564 24 14 0.5619 -2.1423 4.7382 25 1 0.9958 -3.5624 4.7612 26 1 0.7530 -1.5445 6.0839 27 1 -0.8729 -2.0692 4.3631 28 1 -0.3633 0.5094 0.8925 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3634 -1.0276 -0.0051 31 1 1.6029 -1.7270 -1.2892 32 1 1.7660 -0.1695 -2.1366 33 1 4.0061 0.1458 -1.0995 34 1 3.9378 -1.3476 -2.0652 35 1 5.9807 -1.1491 -0.3153 36 1 7.8571 -1.2088 -0.3207 37 1 10.2970 -1.5035 -0.1887 38 1 9.8859 -4.9737 2.0464 39 1 3.6518 -1.5692 2.1991 40 1 3.9903 0.0036 1.4316 41 1 3.0033 -0.6846 4.7770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071844619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 23.075904 kcal Electronic energy + Delta-G solvation = -25428.573241 eV Core-core repulsion = 21756.222363 eV Total energy + Delta-G solvation = -3672.350877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.70889 -39.16749 -37.59871 -36.53882 -34.53189 -33.06046 -32.71928 -31.29372 -30.53222 -29.83163 -26.30686 -25.25907 -24.46168 -23.61536 -22.30048 -21.08816 -20.23710 -19.40219 -18.14791 -16.97392 -16.38852 -16.31630 -15.59058 -15.40743 -15.06610 -14.76729 -14.31119 -14.00533 -13.84716 -13.78726 -13.44688 -13.38927 -12.77063 -12.50475 -12.31550 -11.99216 -11.89469 -11.49309 -11.15016 -11.13430 -10.89270 -10.72201 -10.58055 -10.41648 -10.29084 -10.23186 -10.03646 -9.96058 -9.70040 -9.49059 -9.24499 -9.15234 -8.60917 -8.42223 -6.62908 -5.74286 -3.19058 0.44993 0.65988 2.01899 2.95912 3.23440 3.43409 3.49473 3.50825 3.63960 4.09844 4.36678 4.47677 4.53933 4.62586 4.89654 5.22904 5.30900 5.34364 5.40822 5.49599 5.53523 5.58709 5.65591 5.93414 6.06130 6.12621 6.23988 6.27148 6.36571 6.42412 6.45480 6.59803 6.69426 6.84430 7.02572 7.10751 7.28532 7.49725 7.72468 7.75933 7.86770 8.44243 8.50556 9.24130 9.88311 10.42949 11.33723 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004292 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.269138 B = 6522.273974 C = 7901.162855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.084 0.916 8 N -0.710 5.710 9 C 0.545 3.455 10 O -0.496 6.496 11 C -0.073 4.073 12 C -0.131 4.131 13 C 0.094 3.906 14 N -0.460 5.460 15 C 0.107 3.893 16 C -0.046 4.046 17 Cl -0.013 7.013 18 C 0.167 3.833 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.391 0.609 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.017 0.983 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -1.930 -10.616 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.103 0.897 8 N -0.362 5.362 9 C 0.329 3.671 10 O -0.370 6.370 11 C -0.085 4.085 12 C -0.152 4.152 13 C -0.062 4.062 14 N -0.169 5.169 15 C -0.052 4.052 16 C -0.076 4.076 17 Cl 0.017 6.983 18 C 0.040 3.960 19 N -0.306 5.306 20 C -0.383 4.383 21 H 0.089 0.911 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.225 0.775 36 H 0.165 0.835 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.115 0.885 40 H 0.035 0.965 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.410 -2.705 -9.928 16.121 hybrid contribution -1.023 -0.034 0.526 1.151 sum 11.387 -2.739 -9.402 15.018 Atomic orbital electron populations 1.21805 0.95976 1.01401 1.00240 1.20491 0.93106 0.93542 0.87025 0.95738 1.22045 0.94173 1.01384 0.98963 1.21682 0.97551 0.99612 0.96607 1.22074 0.77012 1.01162 0.98509 0.89748 1.45985 1.08934 1.26362 1.54909 1.17910 0.86210 0.82700 0.80298 1.90917 1.62022 1.41204 1.42872 1.20521 0.95573 0.94644 0.97765 1.22406 0.94679 0.99018 0.99088 1.22821 0.92840 0.95069 0.95472 1.67667 1.39913 1.02308 1.07035 1.22833 0.87876 0.97879 0.96581 1.22313 0.93458 0.93533 0.98288 1.98449 1.69811 1.53261 1.76814 1.21100 0.83604 0.96899 0.94350 1.44023 1.02609 1.64799 1.19206 1.19153 0.94715 1.38340 0.86095 0.91145 1.25062 0.97706 0.99377 0.97021 1.69985 1.23296 1.44267 1.16909 0.86329 0.79746 0.80084 0.80858 1.21308 1.21810 1.20422 0.91965 0.94341 0.92799 0.92020 0.92619 0.92240 0.93040 0.77542 0.83503 0.81526 0.81318 0.88533 0.96532 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.30 3.50 -67.60 -0.24 3.06 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 5 C -0.12 -1.78 5.35 -26.70 -0.14 -1.93 16 6 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16 7 H 0.08 1.81 7.58 -51.93 -0.39 1.41 16 8 N -0.71 -11.03 5.04 -54.56 -0.27 -11.31 16 9 C 0.55 9.39 7.76 -12.22 -0.09 9.29 16 10 O -0.50 -10.63 13.83 5.35 0.07 -10.56 16 11 C -0.07 -1.01 5.91 -104.62 -0.62 -1.63 16 12 C -0.13 -1.31 9.61 -39.03 -0.38 -1.69 16 13 C 0.09 0.87 11.17 -17.60 -0.20 0.67 16 14 N -0.46 -5.12 10.33 -13.27 -0.14 -5.26 16 15 C 0.11 1.21 10.98 -17.54 -0.19 1.01 16 16 C -0.05 -0.62 6.38 -38.91 -0.25 -0.87 16 17 Cl -0.01 -0.20 26.24 -51.86 -1.36 -1.56 16 18 C 0.17 3.96 4.86 -3.71 -0.02 3.95 16 19 N -0.58 -14.28 2.99 -164.77 -0.49 -14.77 16 20 C -0.25 -6.88 8.60 -15.06 -0.13 -7.01 16 21 H 0.07 1.87 6.21 -52.48 -0.33 1.54 16 22 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 23 N -0.90 -26.57 11.14 55.49 0.62 -25.95 16 24 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.39 4.56 6.74 -40.82 -0.28 4.29 16 36 H 0.15 1.03 6.54 -52.49 -0.34 0.69 16 37 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -32.93 345.08 -9.14 -42.07 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.37 Total: 2.19 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.36 Total: 2.55 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.29 Total: -57.28 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.36 Total: -1.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.93 -9.14 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071844619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds