Wall clock time and date at job start Tue Mar 31 2020 14:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58727 * 2 1 4 4 C 1.53198 * 109.58592 * 239.57139 * 2 1 3 5 5 C 1.53033 * 109.31131 * 185.58102 * 4 2 1 6 6 C 1.53036 * 109.53993 * 61.36886 * 5 4 2 7 7 H 1.08999 * 109.53031 * 58.59900 * 6 5 4 8 8 N 1.46500 * 109.49723 * 178.68400 * 6 5 4 9 9 C 1.34779 * 119.99936 * 204.83708 * 8 6 5 10 10 O 1.21517 * 119.99959 * 359.97438 * 9 8 6 11 11 C 1.48075 * 119.99768 * 180.02562 * 9 8 6 12 12 C 1.39859 * 120.93550 * 0.02562 * 11 9 8 13 13 C 1.38090 * 119.01984 * 179.97438 * 12 11 9 14 14 N 1.31845 * 120.93955 * 0.02562 * 13 12 11 15 15 C 1.31757 * 122.07077 * 359.95573 * 14 13 12 16 16 C 1.38353 * 120.87248 * 0.03783 * 15 14 13 17 17 Cl 1.73602 * 120.51838 * 180.25626 * 16 15 14 18 18 C 1.53191 * 109.30977 * 298.63116 * 6 5 4 19 19 N 1.46922 * 109.58556 * 120.28524 * 2 1 3 20 20 C 1.36939 * 120.63207 * 353.37086 * 19 2 1 21 21 H 1.08006 * 119.99823 * 29.04275 * 20 19 2 22 22 C 1.38809 * 120.00423 * 209.03765 * 20 19 2 23 23 N 1.31621 * 119.99786 * 15.01449 * 22 20 19 24 24 Si 1.86803 * 120.00396 * 195.01251 * 22 20 19 25 25 H 1.48503 * 109.46993 * 90.00070 * 24 22 20 26 26 H 1.48491 * 109.46855 * 210.00101 * 24 22 20 27 27 H 1.48491 * 109.46890 * 330.00393 * 24 22 20 28 28 H 1.08998 * 109.46908 * 299.71820 * 1 2 3 29 29 H 1.09002 * 109.46849 * 59.71457 * 1 2 3 30 30 H 1.08997 * 109.47437 * 179.71578 * 1 2 3 31 31 H 1.09001 * 109.49715 * 305.53583 * 4 2 1 32 32 H 1.09004 * 109.49364 * 65.62437 * 4 2 1 33 33 H 1.08994 * 109.46088 * 301.34129 * 5 4 2 34 34 H 1.09007 * 109.45796 * 181.38669 * 5 4 2 35 35 H 0.97003 * 120.00006 * 24.83356 * 8 6 5 36 36 H 1.08002 * 120.49202 * 359.96108 * 12 11 9 37 37 H 1.07995 * 119.52943 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.56254 * 180.02562 * 15 14 13 39 39 H 1.09006 * 109.58544 * 174.42427 * 18 6 5 40 40 H 1.09001 * 109.58847 * 294.84611 * 18 6 5 41 41 H 0.96996 * 120.00470 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5674 -0.8496 -1.1691 6 6 3.9568 -1.6658 0.0655 7 1 3.4986 -2.6532 0.0089 8 7 5.4141 -1.8054 0.1197 9 6 5.9676 -2.8457 0.7739 10 8 5.2578 -3.6676 1.3192 11 6 7.4406 -2.9864 0.8292 12 6 8.2760 -2.0511 0.2100 13 6 9.6443 -2.2205 0.2868 14 7 10.1652 -3.2458 0.9315 15 6 9.4162 -4.1501 1.5293 16 6 8.0359 -4.0587 1.5029 17 17 7.0580 -5.2517 2.2992 18 6 3.4650 -0.9454 1.3248 19 7 2.0225 -0.6981 1.1953 20 6 1.1537 -1.1100 2.1704 21 1 0.1359 -1.3649 1.9142 22 6 1.5811 -1.2000 3.4880 23 7 2.7044 -0.6215 3.8564 24 14 0.5619 -2.1423 4.7382 25 1 0.9958 -3.5624 4.7612 26 1 0.7530 -1.5445 6.0839 27 1 -0.8729 -2.0692 4.3631 28 1 -0.3633 0.5094 0.8925 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3634 -1.0276 -0.0051 31 1 1.6029 -1.7270 -1.2892 32 1 1.7660 -0.1695 -2.1366 33 1 4.0061 0.1458 -1.0995 34 1 3.9378 -1.3476 -2.0652 35 1 5.9807 -1.1491 -0.3153 36 1 7.8571 -1.2088 -0.3207 37 1 10.2970 -1.5035 -0.1887 38 1 9.8859 -4.9737 2.0464 39 1 3.6518 -1.5692 2.1991 40 1 3.9903 0.0036 1.4316 41 1 3.0033 -0.6846 4.7770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071844619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:16 Heat of formation + Delta-G solvation = 0.584957 kcal Electronic energy + Delta-G solvation = -25429.548521 eV Core-core repulsion = 21756.222363 eV Total energy + Delta-G solvation = -3673.326158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74990 -40.45199 -39.14327 -37.61771 -36.07555 -34.71017 -33.96453 -32.23064 -31.93515 -31.63497 -27.86393 -26.99615 -25.65907 -24.53379 -23.97642 -22.44236 -21.67229 -21.00569 -19.30457 -18.36784 -17.93804 -17.28894 -17.17201 -16.61799 -16.39375 -16.17789 -15.72168 -15.38511 -15.14761 -15.13017 -14.94255 -14.73153 -14.39726 -14.12057 -13.52586 -13.24225 -13.09598 -13.03991 -12.75229 -12.74256 -12.58069 -12.32169 -12.24633 -12.10961 -11.96622 -11.65020 -11.42461 -11.25613 -11.13181 -11.01443 -10.54754 -10.46223 -10.13853 -10.03471 -8.62724 -7.85952 -5.31582 -0.55166 -0.17821 0.99610 1.38916 1.44157 1.49213 1.78950 1.99803 2.49173 2.64273 3.29591 3.33890 3.41485 3.53246 3.68826 3.74751 3.95133 4.08872 4.10319 4.25292 4.39562 4.49004 4.55629 4.63444 4.71856 4.75237 4.81790 4.89761 5.01426 5.07986 5.19282 5.29764 5.33445 5.34973 5.44592 5.55165 5.62471 5.70258 5.80978 6.39881 6.51735 6.66347 7.14630 7.20674 7.90445 8.38399 9.18712 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.004292 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.269138 B = 6522.273974 C = 7901.162855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.154 3.846 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.052 0.948 8 N -0.697 5.697 9 C 0.540 3.460 10 O -0.549 6.549 11 C -0.096 4.096 12 C -0.117 4.117 13 C 0.107 3.893 14 N -0.468 5.468 15 C 0.110 3.890 16 C -0.065 4.065 17 Cl -0.042 7.042 18 C 0.179 3.821 19 N -0.603 5.603 20 C -0.249 4.249 21 H 0.074 0.926 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.952 3.048 25 H -0.298 1.298 26 H -0.294 1.294 27 H -0.261 1.261 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.413 0.587 36 H 0.182 0.818 37 H 0.213 0.787 38 H 0.189 0.811 39 H 0.043 0.957 40 H 0.000 1.000 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 -0.456 -13.853 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.027 3.973 7 H 0.070 0.930 8 N -0.349 5.349 9 C 0.326 3.674 10 O -0.426 6.426 11 C -0.108 4.108 12 C -0.137 4.137 13 C -0.050 4.050 14 N -0.177 5.177 15 C -0.047 4.047 16 C -0.095 4.095 17 Cl -0.013 7.013 18 C 0.051 3.949 19 N -0.327 5.327 20 C -0.379 4.379 21 H 0.092 0.908 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.781 3.219 25 H -0.226 1.226 26 H -0.221 1.221 27 H -0.185 1.185 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.199 0.801 37 H 0.229 0.771 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.700 -1.203 -13.219 19.075 hybrid contribution -1.353 -0.402 1.442 2.018 sum 12.347 -1.605 -11.777 17.138 Atomic orbital electron populations 1.21745 0.94932 1.01075 1.01043 1.20813 0.94186 0.93465 0.86688 0.95845 1.21953 0.94672 1.00822 0.98310 1.21655 0.97033 1.00121 0.95699 1.21561 0.78550 0.99307 0.97861 0.92957 1.45736 1.07956 1.26625 1.54610 1.18504 0.87713 0.82105 0.79127 1.90891 1.63666 1.43135 1.44947 1.20400 0.93705 0.96517 1.00143 1.22783 0.94707 0.98514 0.97669 1.23577 0.92994 0.94643 0.93747 1.67792 1.39863 1.02790 1.07246 1.23090 0.86775 0.98503 0.96315 1.22506 0.94136 0.93510 0.99396 1.98433 1.70786 1.54515 1.77580 1.20785 0.83707 0.95357 0.95007 1.44324 1.02581 1.65722 1.20123 1.19482 0.95183 1.36530 0.86715 0.90795 1.25732 0.98978 1.01041 0.98891 1.70140 1.24991 1.46357 1.16425 0.85477 0.79468 0.78032 0.78874 1.22593 1.22110 1.18526 0.94411 0.90241 0.93668 0.93056 0.88479 0.90451 0.89421 0.74901 0.80087 0.77092 0.79455 0.93854 0.98246 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.94 71.98 0.57 -4.04 16 2 C 0.15 5.92 3.50 44.98 0.16 6.07 16 3 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -3.49 5.37 30.67 0.16 -3.33 16 5 C -0.11 -2.92 5.35 30.62 0.16 -2.75 16 6 C 0.13 4.95 2.60 45.07 0.12 5.06 16 7 H 0.05 2.30 7.58 -2.39 -0.02 2.29 16 8 N -0.70 -21.01 5.04 -444.83 -2.24 -23.25 16 9 C 0.54 18.92 7.76 86.85 0.67 19.60 16 10 O -0.55 -24.96 13.83 -3.77 -0.05 -25.02 16 11 C -0.10 -2.59 5.91 -19.86 -0.12 -2.70 16 12 C -0.12 -1.95 9.61 22.63 0.22 -1.73 16 13 C 0.11 1.53 11.17 84.66 0.95 2.47 16 14 N -0.47 -9.07 10.33 -195.91 -2.02 -11.10 16 15 C 0.11 2.37 10.98 84.73 0.93 3.30 16 16 C -0.07 -1.79 6.38 22.71 0.14 -1.65 16 17 Cl -0.04 -1.37 26.24 -2.72 -0.07 -1.45 16 18 C 0.18 8.74 4.86 86.36 0.42 9.16 16 19 N -0.60 -30.07 2.99 -675.21 -2.02 -32.09 16 20 C -0.25 -13.88 8.60 84.03 0.72 -13.16 16 21 H 0.07 3.99 6.21 -2.91 -0.02 3.97 16 22 C -0.05 -3.00 4.96 84.86 0.42 -2.58 16 23 N -0.93 -57.88 11.14 21.65 0.24 -57.64 16 24 Si 0.95 47.89 29.58 68.60 2.03 49.92 16 25 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 26 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 27 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 28 H 0.04 1.48 7.62 -2.39 -0.02 1.47 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.65 7.45 -2.39 -0.02 1.63 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.41 8.44 6.74 -92.71 -0.63 7.82 16 36 H 0.18 1.66 6.54 -2.91 -0.02 1.64 16 37 H 0.21 1.12 8.06 -2.91 -0.02 1.09 16 38 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.04 2.59 6.06 -2.38 -0.01 2.58 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -78.88 345.08 1.83 -77.05 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.44 Total: 9.84 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.53 Total: 13.72 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.04 Total: -124.08 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.45 kcal Total: -78.88 1.83 -77.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071844619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.637 kcal (2) G-P(sol) polarization free energy of solvation -78.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds