Wall clock time and date at job start Tue Mar 31 2020 13:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 119.53586 * 2 1 4 4 C 1.38568 * 119.26043 * 179.97438 * 3 2 1 5 5 C 1.39191 * 118.37915 * 359.97438 * 4 3 2 6 6 N 1.40026 * 120.48879 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00553 * 16.63638 * 6 5 4 8 8 O 1.21590 * 119.99546 * 5.75779 * 7 6 5 9 9 N 1.34775 * 120.00350 * 185.75413 * 7 6 5 10 10 C 1.46916 * 120.63190 * 185.19869 * 9 7 6 11 11 C 1.52762 * 109.00971 * 233.58479 * 10 9 7 12 12 C 1.53035 * 109.38191 * 305.58861 * 11 10 9 13 13 C 1.50698 * 109.45103 * 181.25655 * 12 11 10 14 14 H 1.08001 * 119.99758 * 245.35352 * 13 12 11 15 15 C 1.37880 * 120.00345 * 65.34994 * 13 12 11 16 16 N 1.31516 * 119.99612 * 9.49954 * 15 13 12 17 17 Si 1.86795 * 120.00112 * 189.49848 * 15 13 12 18 18 H 1.48501 * 109.46853 * 94.99269 * 17 15 13 19 19 H 1.48493 * 109.47153 * 214.99103 * 17 15 13 20 20 H 1.48494 * 109.47470 * 334.99656 * 17 15 13 21 21 C 1.53039 * 109.54179 * 61.23623 * 12 11 10 22 22 C 1.46928 * 120.62959 * 5.47608 * 9 7 6 23 23 C 1.38993 * 119.01518 * 0.24777 * 5 4 3 24 24 Cl 1.73601 * 119.67931 * 179.74632 * 23 5 4 25 25 N 1.31896 * 120.64038 * 359.50506 * 23 5 4 26 26 H 1.09004 * 109.46760 * 90.00234 * 1 2 3 27 27 H 1.09002 * 109.47182 * 210.00240 * 1 2 3 28 28 H 1.09001 * 109.47129 * 330.00369 * 1 2 3 29 29 H 1.08003 * 120.36944 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.81001 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00018 * 196.36605 * 6 5 4 32 32 H 1.09001 * 109.58849 * 353.41960 * 10 9 7 33 33 H 1.09005 * 109.59118 * 113.84235 * 10 9 7 34 34 H 1.09001 * 109.56301 * 185.55065 * 11 10 9 35 35 H 1.08998 * 109.38710 * 65.51462 * 11 10 9 36 36 H 1.09006 * 109.46066 * 301.21960 * 12 11 10 37 37 H 0.96996 * 119.99861 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50008 * 178.68484 * 21 12 11 39 39 H 1.09000 * 109.51916 * 58.60143 * 21 12 11 40 40 H 1.08998 * 109.58683 * 246.15764 * 22 9 7 41 41 H 1.09002 * 109.58246 * 6.44105 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2026 0.0000 4 6 3.5740 1.1959 0.0005 5 6 4.2297 -0.0319 0.0016 6 7 5.6288 -0.0902 0.0017 7 6 6.3487 0.9994 0.3348 8 8 5.7866 2.0002 0.7359 9 7 7.6917 0.9797 0.2236 10 6 8.4982 2.1162 0.6888 11 6 9.4055 2.5812 -0.4488 12 6 10.2263 1.3954 -0.9609 13 6 11.1443 1.8589 -2.0624 14 1 11.0078 1.4924 -3.0691 15 6 12.1585 2.7509 -1.7852 16 7 12.4451 3.0536 -0.5378 17 14 13.1254 3.5292 -3.1811 18 1 12.5351 4.8501 -3.5158 19 1 14.5389 3.7103 -2.7635 20 1 13.0708 2.6462 -4.3737 21 6 9.2850 0.3167 -1.5016 22 6 8.3767 -0.1763 -0.3708 23 6 3.4751 -1.1992 -0.0032 24 17 4.2751 -2.7398 -0.0086 25 7 2.1572 -1.1476 0.0012 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6468 2.1370 0.0004 30 1 4.1317 2.1208 0.0001 31 1 6.0798 -0.9159 -0.2343 32 1 7.8409 2.9329 0.9871 33 1 9.1093 1.8078 1.5371 34 1 10.0773 3.3588 -0.0853 35 1 8.7947 2.9781 -1.2597 36 1 10.8187 0.9839 -0.1436 37 1 13.1588 3.6808 -0.3427 38 1 9.8710 -0.5174 -1.8874 39 1 8.6748 0.7340 -2.3026 40 1 8.9776 -0.6755 0.3893 41 1 7.6391 -0.8729 -0.7692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123429466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:03 Heat of formation + Delta-G solvation = 2.586973 kcal Electronic energy + Delta-G solvation = -24845.429547 eV Core-core repulsion = 21172.190203 eV Total energy + Delta-G solvation = -3673.239344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18712 -39.83766 -37.34537 -36.91864 -35.32139 -33.75979 -32.35184 -31.99511 -31.04329 -30.25856 -27.44143 -26.09164 -23.89615 -23.42256 -22.84552 -22.04985 -20.46561 -19.28977 -18.48051 -17.25455 -16.98217 -16.53541 -16.12870 -15.55415 -15.20674 -14.86935 -14.58510 -14.33198 -13.95855 -13.47706 -13.41455 -13.22560 -12.89516 -12.82197 -12.70002 -12.53101 -12.34637 -11.87997 -11.74437 -11.52936 -11.37052 -11.09261 -10.95532 -10.74605 -10.55813 -10.27576 -10.24214 -9.78856 -9.70159 -9.48261 -9.22480 -9.08102 -8.44357 -8.40635 -8.02309 -6.11222 -4.13199 0.71559 1.04405 1.59001 2.49077 3.04631 3.25271 3.33392 3.35675 3.54265 3.77396 4.19203 4.37217 4.49827 4.69225 4.83064 5.10610 5.14459 5.21170 5.35045 5.40205 5.58727 5.61033 5.63690 5.75950 5.86233 5.99074 6.05279 6.08665 6.26285 6.31998 6.44595 6.54409 6.60568 6.80597 6.84505 7.04174 7.24290 7.54698 7.59256 7.79413 7.85872 7.90924 8.31889 8.47589 8.90098 9.51062 10.97549 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.002818 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.388713 B = 9935.414288 C =10432.622283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.107 3.893 3 C -0.140 4.140 4 C -0.089 4.089 5 C 0.150 3.850 6 N -0.677 5.677 7 C 0.706 3.294 8 O -0.579 6.579 9 N -0.606 5.606 10 C 0.125 3.875 11 C -0.118 4.118 12 C 0.048 3.952 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.123 4.123 22 C 0.106 3.894 23 C 0.133 3.867 24 Cl -0.034 7.034 25 N -0.455 5.455 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.411 0.589 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.684 -7.083 2.182 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.032 4.032 3 C -0.161 4.161 4 C -0.117 4.117 5 C 0.048 3.952 6 N -0.325 5.325 7 C 0.408 3.592 8 O -0.458 6.458 9 N -0.341 5.341 10 C 0.003 3.997 11 C -0.157 4.157 12 C 0.029 3.971 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.161 4.161 22 C -0.017 4.017 23 C -0.035 4.035 24 Cl -0.006 7.006 25 N -0.166 5.166 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.200 0.800 31 H 0.251 0.749 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.181 -7.150 2.580 20.632 hybrid contribution 1.487 0.494 -0.909 1.812 sum -17.694 -6.656 1.670 18.978 Atomic orbital electron populations 1.20661 0.88185 1.03532 1.03125 1.21076 0.96917 0.87143 0.98099 1.22049 0.94258 0.99358 1.00398 1.22420 0.94321 0.98710 0.96269 1.18169 0.83271 0.93363 1.00395 1.42926 1.03597 1.15321 1.70640 1.15813 0.82090 0.82650 0.78646 1.90741 1.69235 1.32427 1.53406 1.47529 1.03100 1.21023 1.62432 1.21776 0.92971 0.86823 0.98109 1.21896 0.96706 1.01741 0.95355 1.18646 0.91672 0.90225 0.96559 1.21124 1.13341 1.26245 0.94813 0.92690 1.24951 0.96650 0.96788 0.95330 1.69943 1.30682 1.34440 1.17481 0.86659 0.79232 0.79904 0.82708 1.20690 1.21288 1.19930 1.22010 0.97570 1.00612 0.95883 1.21875 0.95690 0.86857 0.97230 1.21095 0.89839 0.85871 1.06735 1.98391 1.76904 1.28508 1.96822 1.66709 1.06801 1.30315 1.12776 0.90410 0.90514 0.90492 0.83791 0.80017 0.74895 0.90144 0.91874 0.89398 0.93910 0.94601 0.92915 0.91651 0.92801 0.91142 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.01 0.37 -0.33 16 2 C 0.11 1.16 6.78 -82.57 -0.56 0.60 16 3 C -0.14 -1.49 9.73 -39.47 -0.38 -1.87 16 4 C -0.09 -1.18 8.93 -39.11 -0.35 -1.53 16 5 C 0.15 2.06 6.55 -83.48 -0.55 1.52 16 6 N -0.68 -9.42 5.15 -14.09 -0.07 -9.49 16 7 C 0.71 11.66 8.17 -86.92 -0.71 10.95 16 8 O -0.58 -10.71 12.59 5.29 0.07 -10.64 16 9 N -0.61 -10.10 2.98 -178.76 -0.53 -10.63 16 10 C 0.12 2.29 6.41 -3.94 -0.03 2.26 16 11 C -0.12 -2.54 5.19 -26.84 -0.14 -2.68 16 12 C 0.05 1.07 1.93 -91.73 -0.18 0.89 16 13 C -0.52 -13.33 8.48 -34.44 -0.29 -13.62 16 14 H 0.05 1.42 7.77 -52.49 -0.41 1.01 16 15 C 0.06 1.71 5.19 -17.82 -0.09 1.62 16 16 N -0.89 -24.21 12.15 55.43 0.67 -23.53 16 17 Si 0.89 20.54 29.55 -169.99 -5.02 15.51 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.12 -2.23 5.30 -26.61 -0.14 -2.37 16 22 C 0.11 1.59 6.34 -3.71 -0.02 1.57 16 23 C 0.13 1.75 7.29 -17.24 -0.13 1.63 16 24 Cl -0.03 -0.40 27.84 -51.86 -1.44 -1.84 16 25 N -0.45 -5.89 10.25 -6.47 -0.07 -5.96 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.18 2.69 5.34 -52.49 -0.28 2.41 16 31 H 0.41 5.00 5.18 -40.82 -0.21 4.79 16 32 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 2.11 6.87 -51.93 -0.36 1.75 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.72 5.76 -51.93 -0.30 0.42 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -28.92 345.72 -9.66 -38.58 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.27 Total: 4.17 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.20 Total: -1.37 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.00 Total: -49.62 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.44 Total: -1.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.92 -9.66 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123429466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.172 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds