Wall clock time and date at job start Tue Mar 31 2020 13:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 119.53586 * 2 1 4 4 C 1.38568 * 119.26043 * 179.97438 * 3 2 1 5 5 C 1.39191 * 118.37915 * 359.97438 * 4 3 2 6 6 N 1.40026 * 120.48879 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00553 * 16.63638 * 6 5 4 8 8 O 1.21590 * 119.99546 * 5.75779 * 7 6 5 9 9 N 1.34775 * 120.00350 * 185.75413 * 7 6 5 10 10 C 1.46916 * 120.63190 * 185.19869 * 9 7 6 11 11 C 1.52762 * 109.00971 * 233.58479 * 10 9 7 12 12 C 1.53035 * 109.38191 * 305.58861 * 11 10 9 13 13 C 1.50698 * 109.45103 * 181.25655 * 12 11 10 14 14 H 1.08001 * 119.99758 * 245.35352 * 13 12 11 15 15 C 1.37880 * 120.00345 * 65.34994 * 13 12 11 16 16 N 1.31516 * 119.99612 * 9.49954 * 15 13 12 17 17 Si 1.86795 * 120.00112 * 189.49848 * 15 13 12 18 18 H 1.48501 * 109.46853 * 94.99269 * 17 15 13 19 19 H 1.48493 * 109.47153 * 214.99103 * 17 15 13 20 20 H 1.48494 * 109.47470 * 334.99656 * 17 15 13 21 21 C 1.53039 * 109.54179 * 61.23623 * 12 11 10 22 22 C 1.46928 * 120.62959 * 5.47608 * 9 7 6 23 23 C 1.38993 * 119.01518 * 0.24777 * 5 4 3 24 24 Cl 1.73601 * 119.67931 * 179.74632 * 23 5 4 25 25 N 1.31896 * 120.64038 * 359.50506 * 23 5 4 26 26 H 1.09004 * 109.46760 * 90.00234 * 1 2 3 27 27 H 1.09002 * 109.47182 * 210.00240 * 1 2 3 28 28 H 1.09001 * 109.47129 * 330.00369 * 1 2 3 29 29 H 1.08003 * 120.36944 * 0.02562 * 3 2 1 30 30 H 1.07999 * 120.81001 * 179.97438 * 4 3 2 31 31 H 0.97001 * 120.00018 * 196.36605 * 6 5 4 32 32 H 1.09001 * 109.58849 * 353.41960 * 10 9 7 33 33 H 1.09005 * 109.59118 * 113.84235 * 10 9 7 34 34 H 1.09001 * 109.56301 * 185.55065 * 11 10 9 35 35 H 1.08998 * 109.38710 * 65.51462 * 11 10 9 36 36 H 1.09006 * 109.46066 * 301.21960 * 12 11 10 37 37 H 0.96996 * 119.99861 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50008 * 178.68484 * 21 12 11 39 39 H 1.09000 * 109.51916 * 58.60143 * 21 12 11 40 40 H 1.08998 * 109.58683 * 246.15764 * 22 9 7 41 41 H 1.09002 * 109.58246 * 6.44105 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2026 0.0000 4 6 3.5740 1.1959 0.0005 5 6 4.2297 -0.0319 0.0016 6 7 5.6288 -0.0902 0.0017 7 6 6.3487 0.9994 0.3348 8 8 5.7866 2.0002 0.7359 9 7 7.6917 0.9797 0.2236 10 6 8.4982 2.1162 0.6888 11 6 9.4055 2.5812 -0.4488 12 6 10.2263 1.3954 -0.9609 13 6 11.1443 1.8589 -2.0624 14 1 11.0078 1.4924 -3.0691 15 6 12.1585 2.7509 -1.7852 16 7 12.4451 3.0536 -0.5378 17 14 13.1254 3.5292 -3.1811 18 1 12.5351 4.8501 -3.5158 19 1 14.5389 3.7103 -2.7635 20 1 13.0708 2.6462 -4.3737 21 6 9.2850 0.3167 -1.5016 22 6 8.3767 -0.1763 -0.3708 23 6 3.4751 -1.1992 -0.0032 24 17 4.2751 -2.7398 -0.0086 25 7 2.1572 -1.1476 0.0012 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6468 2.1370 0.0004 30 1 4.1317 2.1208 0.0001 31 1 6.0798 -0.9159 -0.2343 32 1 7.8409 2.9329 0.9871 33 1 9.1093 1.8078 1.5371 34 1 10.0773 3.3588 -0.0853 35 1 8.7947 2.9781 -1.2597 36 1 10.8187 0.9839 -0.1436 37 1 13.1588 3.6808 -0.3427 38 1 9.8710 -0.5174 -1.8874 39 1 8.6748 0.7340 -2.3026 40 1 8.9776 -0.6755 0.3893 41 1 7.6391 -0.8729 -0.7692 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123429466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:02 Heat of formation + Delta-G solvation = -13.360774 kcal Electronic energy + Delta-G solvation = -24846.121093 eV Core-core repulsion = 21172.190203 eV Total energy + Delta-G solvation = -3673.930890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30284 -40.94722 -38.78318 -37.84455 -36.47673 -35.45950 -33.39934 -33.19133 -32.46555 -31.66797 -28.53913 -27.61565 -24.95929 -24.83382 -24.18447 -23.28495 -21.86412 -20.61406 -19.79269 -18.41896 -18.39063 -17.93303 -17.30412 -16.79195 -16.50719 -16.34783 -15.84737 -15.33449 -15.22708 -14.93171 -14.72033 -14.38059 -14.28906 -14.18015 -13.81633 -13.54679 -13.32596 -13.14866 -12.97120 -12.81111 -12.67756 -12.52367 -12.42372 -12.21598 -12.08138 -12.00939 -11.48969 -11.46270 -10.94649 -10.88649 -10.74417 -10.47982 -10.41657 -9.75256 -9.13237 -8.12770 -6.20165 -0.21007 0.08608 0.65743 1.28665 1.39876 1.43232 1.51158 1.82990 2.43527 2.56742 2.58805 3.17974 3.36338 3.57355 3.82598 3.89653 3.97128 4.20908 4.26093 4.30602 4.43847 4.52688 4.63943 4.70388 4.82618 4.86286 4.87372 4.91473 4.95283 5.09317 5.16823 5.19210 5.28218 5.34458 5.40404 5.60825 5.63991 5.77812 5.97218 6.00445 6.37058 6.62777 6.65133 6.91231 7.20183 7.46665 8.94915 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.002818 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.388713 B = 9935.414288 C =10432.622283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.108 3.892 3 C -0.131 4.131 4 C -0.103 4.103 5 C 0.128 3.872 6 N -0.666 5.666 7 C 0.706 3.294 8 O -0.601 6.601 9 N -0.610 5.610 10 C 0.138 3.862 11 C -0.106 4.106 12 C 0.044 3.956 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.914 5.914 17 Si 0.943 3.057 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.115 4.115 22 C 0.111 3.889 23 C 0.126 3.874 24 Cl -0.026 7.026 25 N -0.472 5.472 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.177 0.823 30 H 0.166 0.834 31 H 0.419 0.581 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.757 -7.942 1.728 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.031 4.031 3 C -0.152 4.152 4 C -0.131 4.131 5 C 0.028 3.972 6 N -0.315 5.315 7 C 0.409 3.591 8 O -0.482 6.482 9 N -0.344 5.344 10 C 0.015 3.985 11 C -0.145 4.145 12 C 0.025 3.975 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.769 3.231 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.153 4.153 22 C -0.011 4.011 23 C -0.041 4.041 24 Cl 0.002 6.998 25 N -0.184 5.184 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.260 0.740 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.276 -8.050 2.108 22.846 hybrid contribution 2.026 0.756 -0.783 2.300 sum -19.250 -7.294 1.325 20.628 Atomic orbital electron populations 1.20799 0.85350 1.04769 1.04387 1.21763 0.98709 0.86577 0.96073 1.22381 0.93227 1.00827 0.98719 1.22392 0.95599 0.97950 0.97195 1.18282 0.82986 0.93948 1.02017 1.42689 1.03766 1.14744 1.70301 1.15844 0.81866 0.82945 0.78465 1.90738 1.69621 1.33514 1.54340 1.47442 1.03283 1.20911 1.62798 1.21449 0.92581 0.87654 0.96772 1.21652 0.96347 1.00592 0.95934 1.18611 0.92083 0.91716 0.95045 1.21528 1.13872 1.26176 0.95481 0.93094 1.25636 0.97838 0.97405 0.97229 1.70046 1.31268 1.35035 1.18983 0.85773 0.77925 0.78995 0.80357 1.20608 1.21124 1.19322 1.21855 0.97247 0.99463 0.96744 1.21925 0.96134 0.86637 0.96443 1.21176 0.90088 0.86117 1.06700 1.98387 1.76794 1.27794 1.96777 1.66826 1.06639 1.31416 1.13505 0.88964 0.90555 0.88015 0.80590 0.81682 0.74015 0.90293 0.91458 0.92452 0.95099 0.97065 0.93036 0.90719 0.93406 0.89803 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.24 0.72 -0.32 16 2 C 0.11 2.07 6.78 42.54 0.29 2.36 16 3 C -0.13 -2.48 9.73 22.34 0.22 -2.27 16 4 C -0.10 -2.64 8.93 22.58 0.20 -2.44 16 5 C 0.13 3.40 6.55 38.24 0.25 3.65 16 6 N -0.67 -17.71 5.15 -316.76 -1.63 -19.34 16 7 C 0.71 22.80 8.17 179.05 1.46 24.26 16 8 O -0.60 -22.16 12.59 -4.00 -0.05 -22.21 16 9 N -0.61 -19.85 2.98 -837.75 -2.49 -22.34 16 10 C 0.14 5.11 6.41 86.22 0.55 5.66 16 11 C -0.11 -4.70 5.19 30.53 0.16 -4.54 16 12 C 0.04 2.02 1.93 -11.52 -0.02 2.00 16 13 C -0.53 -27.83 8.48 25.60 0.22 -27.62 16 14 H 0.05 2.64 7.77 -2.91 -0.02 2.62 16 15 C 0.02 0.97 5.19 84.66 0.44 1.41 16 16 N -0.91 -51.05 12.15 21.45 0.26 -50.79 16 17 Si 0.94 42.52 29.55 68.60 2.03 44.55 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.11 -4.10 5.30 30.67 0.16 -3.93 16 22 C 0.11 3.13 6.34 86.36 0.55 3.67 16 23 C 0.13 3.16 7.29 84.86 0.62 3.78 16 24 Cl -0.03 -0.56 27.84 -2.72 -0.08 -0.64 16 25 N -0.47 -11.36 10.25 -174.38 -1.79 -13.15 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.17 4.85 5.34 -2.96 -0.02 4.83 16 31 H 0.42 9.40 5.18 -92.71 -0.48 8.92 16 32 H 0.08 2.95 7.00 -2.39 -0.02 2.93 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.06 2.87 6.87 -2.39 -0.02 2.85 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.01 0.57 8.09 -2.38 -0.02 0.55 16 37 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.09 2.02 5.76 -2.39 -0.01 2.00 16 Total: -1.00 -63.40 345.72 2.66 -60.75 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.59 Total: 17.50 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.82 Total: 5.68 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.65 Total: -105.63 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -63.40 2.66 -60.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123429466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.387 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds